Wall clock time and date at job start Tue Mar 31 2020 16:54:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47315 * 2 1 4 4 H 1.09010 * 109.46782 * 304.99955 * 3 2 1 5 5 C 1.50695 * 109.47586 * 185.00264 * 3 2 1 6 6 H 1.07999 * 119.99932 * 240.00547 * 5 3 2 7 7 C 1.37878 * 120.00194 * 59.99146 * 5 3 2 8 8 N 1.31507 * 120.00090 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99878 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47372 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46766 * 120.00446 * 9 7 5 12 12 H 1.48498 * 109.47009 * 240.00168 * 9 7 5 13 13 O 1.42899 * 109.47108 * 64.99504 * 3 2 1 14 14 C 1.34930 * 117.00490 * 270.00340 * 13 3 2 15 15 O 1.21656 * 119.99886 * 359.97438 * 14 13 3 16 16 C 1.41779 * 120.00307 * 179.97438 * 14 13 3 17 17 C 1.35096 * 119.99864 * 179.97438 * 16 14 13 18 18 C 1.46963 * 119.99843 * 180.02562 * 17 16 14 19 19 C 1.39995 * 120.08254 * 0.02562 * 18 17 16 20 20 C 1.37788 * 120.08614 * 179.97438 * 19 18 17 21 21 C 1.38737 * 120.10496 * 359.97438 * 20 19 18 22 22 C 1.39739 * 120.14271 * 0.02562 * 21 20 19 23 23 C 1.38033 * 120.14678 * 359.96101 * 22 21 20 24 24 N 1.40263 * 119.24032 * 179.97438 * 22 21 20 25 25 C 1.35084 * 118.97183 * 15.55261 * 24 22 21 26 26 O 1.21293 * 120.14006 * 181.61225 * 25 24 22 27 27 C 1.50752 * 119.72202 * 1.63848 * 25 24 22 28 28 O 1.35878 * 120.49182 * 180.08237 * 21 20 19 29 29 H 1.09000 * 109.47286 * 60.00450 * 1 2 3 30 30 H 1.09008 * 109.47489 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47660 * 299.99958 * 1 2 3 32 32 H 1.08995 * 109.47183 * 239.99687 * 2 1 3 33 33 H 1.09005 * 109.46940 * 119.99869 * 2 1 3 34 34 H 0.97003 * 120.00754 * 179.97438 * 8 7 5 35 35 H 1.07994 * 120.00042 * 0.02562 * 16 14 13 36 36 H 1.07994 * 120.00094 * 0.02562 * 17 16 14 37 37 H 1.08001 * 119.96176 * 359.68630 * 19 18 17 38 38 H 1.07995 * 119.94608 * 179.97438 * 20 19 18 39 39 H 1.08001 * 120.15485 * 180.02562 * 23 22 21 40 40 H 0.96998 * 120.51635 * 195.53793 * 24 22 21 41 41 H 1.09002 * 109.44227 * 208.53925 * 27 25 24 42 42 H 1.08999 * 109.41522 * 88.62784 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 -0.8419 5 6 3.5418 1.4443 -0.1239 6 1 4.1471 1.8888 0.6523 7 6 4.1432 0.8783 -1.2280 8 7 3.4062 0.3373 -2.1732 9 14 6.0049 0.8801 -1.3811 10 1 6.5988 1.5444 -0.1931 11 1 6.4961 -0.5190 -1.4626 12 1 6.3999 1.6156 -2.6092 13 8 1.6619 2.0814 1.2210 14 6 0.4725 2.7185 1.2363 15 8 -0.2238 2.7309 0.2388 16 6 0.0343 3.3735 2.4149 17 6 -1.1563 4.0117 2.4300 18 6 -1.6103 4.6912 3.6516 19 6 -0.8102 4.6785 4.8003 20 6 -1.2356 5.3159 5.9454 21 6 -2.4576 5.9725 5.9633 22 6 -3.2618 5.9896 4.8206 23 6 -2.8436 5.3539 3.6690 24 7 -4.4940 6.6586 4.8600 25 6 -4.7359 7.5256 5.8673 26 8 -5.8053 8.0936 5.9383 27 6 -3.6711 7.7845 6.9025 28 8 -2.8840 6.6051 7.0877 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5138 0.8900 34 1 3.8292 -0.0606 -2.9502 35 1 0.6526 3.3628 3.3003 36 1 -1.7744 4.0227 1.5445 37 1 0.1396 4.1645 4.7904 38 1 -0.6167 5.3043 6.8304 39 1 -3.4648 5.3674 2.7857 40 1 -5.1619 6.5015 4.1744 41 1 -4.1420 8.0581 7.8467 42 1 -3.0302 8.5998 6.5670 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344580567.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:08 Heat of formation + Delta-G solvation = -134.878013 kcal Electronic energy + Delta-G solvation = -26781.195695 eV Core-core repulsion = 22691.223418 eV Total energy + Delta-G solvation = -4089.972278 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.50583 -41.46380 -40.08275 -38.89042 -37.82516 -36.50429 -35.44227 -34.54260 -33.29396 -31.54735 -30.66530 -29.41053 -28.67919 -26.21747 -25.08563 -24.14217 -23.65362 -22.03101 -21.09467 -20.18241 -19.98874 -19.03805 -18.71969 -18.49641 -17.89695 -17.39138 -17.16664 -16.99896 -16.41943 -16.26627 -15.97117 -15.63957 -15.25199 -15.03187 -14.83242 -14.69546 -14.38862 -14.17489 -13.98128 -13.46906 -13.37031 -13.30654 -13.10181 -13.05174 -12.81048 -12.59087 -12.51637 -12.19639 -12.11641 -12.11202 -11.73580 -11.43653 -11.36885 -11.27177 -10.80841 -10.75327 -10.48221 -9.61442 -8.89398 -8.24699 -6.41192 -0.73190 0.04665 0.65481 1.19818 1.43368 1.43698 1.57660 1.63874 2.11680 2.18892 2.25935 2.51632 2.71977 2.88085 3.04886 3.48638 3.63792 3.96628 3.98497 4.07676 4.12504 4.24745 4.30614 4.40650 4.43130 4.45767 4.60558 4.61831 4.81426 4.87466 4.97256 5.03815 5.09814 5.25075 5.25325 5.37716 5.44844 5.49767 5.53681 5.55365 5.67837 5.71490 6.03223 6.15620 6.19158 6.63195 6.64737 7.07081 7.31728 8.82250 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.028012 B = 0.001991 C = 0.001921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.342845 B =14056.496163 C =14574.569330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.131 4.131 3 C 0.222 3.778 4 H 0.004 0.996 5 C -0.547 4.547 6 H 0.066 0.934 7 C 0.015 3.985 8 N -0.915 5.915 9 Si 0.980 3.020 10 H -0.263 1.263 11 H -0.273 1.273 12 H -0.277 1.277 13 O -0.356 6.356 14 C 0.479 3.521 15 O -0.552 6.552 16 C -0.205 4.205 17 C 0.016 3.984 18 C -0.077 4.077 19 C -0.079 4.079 20 C -0.107 4.107 21 C 0.086 3.914 22 C 0.078 3.922 23 C -0.089 4.089 24 N -0.656 5.656 25 C 0.488 3.512 26 O -0.550 6.550 27 C 0.051 3.949 28 O -0.305 6.305 29 H 0.035 0.965 30 H 0.059 0.941 31 H 0.038 0.962 32 H 0.084 0.916 33 H 0.045 0.955 34 H 0.269 0.731 35 H 0.164 0.836 36 H 0.135 0.865 37 H 0.159 0.841 38 H 0.166 0.834 39 H 0.156 0.844 40 H 0.422 0.578 41 H 0.168 0.832 42 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.928 12.556 19.010 25.716 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.169 4.169 3 C 0.167 3.833 4 H 0.022 0.978 5 C -0.585 4.585 6 H 0.084 0.916 7 C -0.185 4.185 8 N -0.553 5.553 9 Si 0.804 3.196 10 H -0.187 1.187 11 H -0.198 1.198 12 H -0.203 1.203 13 O -0.272 6.272 14 C 0.329 3.671 15 O -0.447 6.447 16 C -0.224 4.224 17 C -0.003 4.003 18 C -0.078 4.078 19 C -0.097 4.097 20 C -0.125 4.125 21 C 0.039 3.961 22 C -0.017 4.017 23 C -0.109 4.109 24 N -0.303 5.303 25 C 0.277 3.723 26 O -0.428 6.428 27 C -0.026 4.026 28 O -0.219 6.219 29 H 0.054 0.946 30 H 0.078 0.922 31 H 0.057 0.943 32 H 0.102 0.898 33 H 0.064 0.936 34 H 0.079 0.921 35 H 0.181 0.819 36 H 0.153 0.847 37 H 0.176 0.824 38 H 0.184 0.816 39 H 0.174 0.826 40 H 0.263 0.737 41 H 0.185 0.815 42 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -12.555 12.776 18.934 26.065 hybrid contribution 0.198 -0.227 -1.393 1.425 sum -12.358 12.549 17.542 24.857 Atomic orbital electron populations 1.21707 0.96267 1.00483 1.00146 1.21888 0.94501 0.98353 1.02197 1.19924 0.94526 0.89377 0.79431 0.97801 1.21393 0.90640 1.39684 1.06790 0.91589 1.25814 1.04191 0.93988 0.94460 1.70023 1.37313 1.38101 1.09860 0.85174 0.77848 0.78255 0.78367 1.18681 1.19787 1.20260 1.86163 1.35966 1.63171 1.41911 1.20703 0.79885 0.76889 0.89632 1.90807 1.55835 1.60374 1.37714 1.21439 0.99930 1.03728 0.97275 1.22433 0.93188 0.88197 0.96438 1.18668 0.95143 1.00534 0.93489 1.21616 1.00300 0.97066 0.90731 1.20710 0.92659 0.99025 1.00155 1.19081 0.94124 0.98217 0.84685 1.17915 0.87445 1.00898 0.95419 1.20953 0.96058 0.97108 0.96769 1.43755 1.16412 1.41382 1.28759 1.22051 0.89605 0.77953 0.82729 1.90816 1.26711 1.49618 1.75624 1.23468 0.90585 0.87697 1.00897 1.86236 1.67721 1.39856 1.28129 0.94592 0.92165 0.94262 0.89816 0.93641 0.92140 0.81858 0.84693 0.82394 0.81603 0.82645 0.73745 0.81456 0.85720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 8.55 71.98 0.62 -5.03 16 2 C -0.13 -6.64 5.48 30.59 0.17 -6.47 16 3 C 0.22 12.08 2.22 29.85 0.07 12.15 16 4 H 0.00 0.26 7.11 -2.38 -0.02 0.24 16 5 C -0.55 -31.08 8.89 25.60 0.23 -30.85 16 6 H 0.07 3.67 7.81 -2.91 -0.02 3.65 16 7 C 0.02 0.83 5.29 84.66 0.45 1.28 16 8 N -0.91 -52.51 11.29 21.45 0.24 -52.26 16 9 Si 0.98 42.79 29.54 68.60 2.03 44.82 16 10 H -0.26 -11.06 7.11 99.48 0.71 -10.35 16 11 H -0.27 -11.45 7.11 99.48 0.71 -10.74 16 12 H -0.28 -11.81 7.11 99.48 0.71 -11.10 16 13 O -0.36 -16.94 9.68 -58.46 -0.57 -17.51 16 14 C 0.48 19.47 6.11 68.70 0.42 19.89 16 15 O -0.55 -25.32 13.23 19.33 0.26 -25.06 16 16 C -0.21 -5.65 9.33 22.42 0.21 -5.44 16 17 C 0.02 0.35 9.41 23.83 0.22 0.58 16 18 C -0.08 -1.26 5.87 -20.13 -0.12 -1.37 16 19 C -0.08 -1.06 9.40 22.59 0.21 -0.84 16 20 C -0.11 -1.26 9.98 22.28 0.22 -1.04 16 21 C 0.09 1.18 6.45 22.75 0.15 1.33 16 22 C 0.08 1.09 6.54 38.11 0.25 1.34 16 23 C -0.09 -1.22 9.69 22.65 0.22 -1.00 16 24 N -0.66 -8.88 5.47 -302.76 -1.66 -10.54 16 25 C 0.49 7.54 7.94 87.63 0.70 8.23 16 26 O -0.55 -12.35 17.95 -3.07 -0.06 -12.41 16 27 C 0.05 0.46 7.16 71.25 0.51 0.97 16 28 O -0.31 -3.88 10.44 -92.17 -0.96 -4.85 16 29 H 0.03 1.67 7.75 -2.39 -0.02 1.65 16 30 H 0.06 2.27 8.14 -2.38 -0.02 2.25 16 31 H 0.04 1.63 6.05 -2.38 -0.01 1.62 16 32 H 0.08 4.64 5.95 -2.39 -0.01 4.62 16 33 H 0.04 2.20 8.14 -2.38 -0.02 2.18 16 34 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.16 3.49 6.06 -2.91 -0.02 3.47 16 36 H 0.14 3.10 7.45 -2.91 -0.02 3.08 16 37 H 0.16 1.71 6.15 -2.91 -0.02 1.70 16 38 H 0.17 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.16 1.58 8.06 -2.91 -0.02 1.56 16 40 H 0.42 4.63 8.88 -92.71 -0.82 3.81 16 41 H 0.17 0.81 8.14 -2.39 -0.02 0.79 16 42 H 0.13 0.60 8.14 -2.39 -0.02 0.58 16 Total: -1.00 -74.28 357.46 4.06 -70.23 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: 0.26 Total: 13.86 kcal Atomic # 6 Polarization: -10.79 SS G_CDS: 4.52 Total: -6.28 kcal Atomic # 7 Polarization: -61.38 SS G_CDS: -1.41 Total: -62.80 kcal Atomic # 8 Polarization: -58.50 SS G_CDS: -1.33 Total: -59.83 kcal Atomic # 14 Polarization: 42.79 SS G_CDS: 2.03 Total: 44.82 kcal Total: -74.28 4.06 -70.23 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344580567.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.652 kcal (2) G-P(sol) polarization free energy of solvation -74.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds