Wall clock time and date at job start Tue Mar 31 2020 16:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47007 * 2 1 4 4 H 1.09006 * 109.47066 * 55.00211 * 3 2 1 5 5 C 1.50703 * 109.46930 * 175.00086 * 3 2 1 6 6 H 1.08004 * 120.00000 * 120.00098 * 5 3 2 7 7 C 1.37874 * 120.00287 * 300.00107 * 5 3 2 8 8 N 1.31517 * 119.99882 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00560 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47237 * 89.99640 * 9 7 5 11 11 H 1.48494 * 109.47475 * 210.00036 * 9 7 5 12 12 H 1.48507 * 109.46918 * 330.00217 * 9 7 5 13 13 O 1.42899 * 109.47390 * 295.00334 * 3 2 1 14 14 C 1.34923 * 117.00191 * 90.00201 * 13 3 2 15 15 O 1.21652 * 120.00101 * 359.97438 * 14 13 3 16 16 C 1.41780 * 120.00037 * 180.02562 * 14 13 3 17 17 C 1.35099 * 119.99893 * 187.20926 * 16 14 13 18 18 C 1.46960 * 120.00225 * 10.77549 * 17 16 14 19 19 C 1.39990 * 120.08050 * 223.92422 * 18 17 16 20 20 C 1.37784 * 120.08031 * 179.97438 * 19 18 17 21 21 C 1.38738 * 120.11057 * 359.97412 * 20 19 18 22 22 C 1.39729 * 120.14053 * 0.04863 * 21 20 19 23 23 C 1.38038 * 120.15006 * 359.95191 * 22 21 20 24 24 N 1.40258 * 119.17513 * 179.67631 * 22 21 20 25 25 C 1.35083 * 118.97495 * 16.08421 * 24 22 21 26 26 O 1.21303 * 120.13389 * 181.36317 * 25 24 22 27 27 C 1.50747 * 119.72814 * 1.08159 * 25 24 22 28 28 O 1.35870 * 120.49258 * 180.02562 * 21 20 19 29 29 H 1.09001 * 109.47419 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46968 * 299.99983 * 1 2 3 31 31 H 1.08995 * 109.46927 * 59.99430 * 1 2 3 32 32 H 1.08997 * 109.46622 * 240.00281 * 2 1 3 33 33 H 1.09001 * 109.47187 * 119.99903 * 2 1 3 34 34 H 0.96998 * 120.00115 * 179.97438 * 8 7 5 35 35 H 1.08004 * 119.99934 * 7.21641 * 16 14 13 36 36 H 1.08002 * 119.99798 * 190.76627 * 17 16 14 37 37 H 1.07997 * 119.96431 * 359.97438 * 19 18 17 38 38 H 1.08008 * 119.94787 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.16021 * 179.97438 * 23 22 21 40 40 H 0.96993 * 120.50811 * 195.84517 * 24 22 21 41 41 H 1.09004 * 109.43862 * 88.94216 * 27 25 24 42 42 H 1.09004 * 109.44150 * 208.86789 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3374 2.1733 9 14 6.0049 0.8811 1.3818 10 1 6.4417 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6136 0.8416 0.0277 13 8 1.6619 2.0814 -1.2210 14 6 0.4727 2.7185 -1.2363 15 8 -0.2240 2.7301 -0.2391 16 6 0.0344 3.3735 -2.4148 17 6 -1.0830 4.1325 -2.3901 18 6 -1.7109 4.4743 -1.1062 19 6 -3.1009 4.3927 -0.9611 20 6 -3.6895 4.7127 0.2429 21 6 -2.9067 5.1160 1.3149 22 6 -1.5187 5.2004 1.1777 23 6 -0.9203 4.8818 -0.0247 24 7 -0.7475 5.6170 2.2726 25 6 -1.3022 5.6103 3.5042 26 8 -0.6624 5.9897 4.4624 27 6 -2.7218 5.1352 3.6821 28 8 -3.4790 5.4329 2.5058 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8294 -0.0611 2.9498 35 1 0.5938 3.2657 -3.3324 36 1 -1.5147 4.4882 -3.3140 37 1 -3.7126 4.0786 -1.7939 38 1 -4.7621 4.6486 0.3525 39 1 0.1524 4.9473 -0.1311 40 1 0.1711 5.9023 2.1477 41 1 -2.7253 4.0588 3.8538 42 1 -3.1689 5.6406 4.5381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001344580568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:12 Heat of formation + Delta-G solvation = -99.606381 kcal Electronic energy + Delta-G solvation = -28842.613165 eV Core-core repulsion = 24754.170380 eV Total energy + Delta-G solvation = -4088.442785 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.41639 -40.08140 -38.78794 -37.75082 -36.10860 -35.17430 -33.52953 -33.33151 -31.36341 -30.05746 -29.79326 -27.89031 -27.24386 -24.76251 -23.34787 -23.04858 -22.43711 -20.40465 -19.75647 -19.03562 -18.63609 -18.03593 -17.20664 -16.77634 -16.65832 -16.17005 -15.61150 -15.30068 -15.14732 -14.75228 -14.57663 -14.45960 -14.01239 -13.86282 -13.72518 -13.05442 -12.96395 -12.87293 -12.79349 -12.20949 -11.93111 -11.64969 -11.49132 -11.31806 -11.26065 -11.17445 -10.97429 -10.81328 -10.68689 -10.30219 -10.16352 -9.83848 -9.71126 -9.59604 -9.37564 -8.81237 -8.47460 -8.11675 -7.81199 -6.20542 -4.27966 0.56742 1.19182 1.68857 2.29407 2.78080 3.20541 3.22366 3.28485 3.31870 3.57504 3.75628 3.86680 3.94560 4.33941 4.56251 4.67393 4.81931 4.97820 5.11055 5.12850 5.18601 5.32111 5.39752 5.63167 5.73667 5.86985 6.03608 6.07035 6.21140 6.26332 6.33251 6.42499 6.45374 6.54714 6.57250 6.82057 6.85279 6.94444 7.15242 7.23614 7.24776 7.59745 7.71825 7.76906 7.92817 8.14445 8.61889 8.88639 9.38092 10.86020 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011434 B = 0.004256 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.255586 B = 6576.645871 C = 8033.342735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C 0.220 3.780 4 H 0.043 0.957 5 C -0.522 4.522 6 H 0.067 0.933 7 C 0.064 3.936 8 N -0.887 5.887 9 Si 0.908 3.092 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.346 6.346 14 C 0.474 3.526 15 O -0.503 6.503 16 C -0.180 4.180 17 C -0.025 4.025 18 C -0.061 4.061 19 C -0.088 4.088 20 C -0.122 4.122 21 C 0.085 3.915 22 C 0.084 3.916 23 C -0.036 4.036 24 N -0.654 5.654 25 C 0.492 3.508 26 O -0.518 6.518 27 C 0.051 3.949 28 O -0.305 6.305 29 H 0.031 0.969 30 H 0.051 0.949 31 H 0.032 0.968 32 H 0.040 0.960 33 H 0.106 0.894 34 H 0.266 0.734 35 H 0.142 0.858 36 H 0.143 0.857 37 H 0.133 0.867 38 H 0.136 0.864 39 H 0.127 0.873 40 H 0.417 0.583 41 H 0.101 0.899 42 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.297 8.769 -6.599 18.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.175 4.175 3 C 0.166 3.834 4 H 0.061 0.939 5 C -0.560 4.560 6 H 0.085 0.915 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.735 3.265 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.262 6.262 14 C 0.320 3.680 15 O -0.396 6.396 16 C -0.199 4.199 17 C -0.043 4.043 18 C -0.062 4.062 19 C -0.107 4.107 20 C -0.141 4.141 21 C 0.039 3.961 22 C -0.011 4.011 23 C -0.056 4.056 24 N -0.301 5.301 25 C 0.279 3.721 26 O -0.393 6.393 27 C -0.027 4.027 28 O -0.219 6.219 29 H 0.050 0.950 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.059 0.941 33 H 0.124 0.876 34 H 0.076 0.924 35 H 0.159 0.841 36 H 0.161 0.839 37 H 0.151 0.849 38 H 0.154 0.846 39 H 0.145 0.855 40 H 0.256 0.744 41 H 0.119 0.881 42 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -14.419 8.889 -5.429 17.788 hybrid contribution 1.728 -0.322 0.211 1.771 sum -12.691 8.567 -5.218 16.177 Atomic orbital electron populations 1.21834 0.98340 0.98846 1.00662 1.22034 0.92614 0.99594 1.03216 1.20206 0.94945 0.88847 0.79357 0.93880 1.21049 0.89743 1.39034 1.06187 0.91457 1.24877 0.99131 0.94740 0.95107 1.69888 1.35368 1.37775 1.09429 0.86325 0.84056 0.77736 0.78354 1.20432 1.20928 1.19576 1.86206 1.33971 1.62394 1.43613 1.20021 0.81274 0.78279 0.88400 1.90900 1.54582 1.58279 1.35809 1.21703 0.98355 1.00989 0.98866 1.22370 0.92414 0.93201 0.96361 1.18623 0.93012 1.01126 0.93410 1.20939 0.93188 0.99506 0.97096 1.20243 0.99958 1.02126 0.91726 1.18715 0.89031 1.01356 0.87005 1.17777 0.89751 1.04482 0.89139 1.20586 0.99331 0.95443 0.90270 1.43678 1.16523 1.64220 1.05716 1.21464 0.90165 0.77935 0.82536 1.90808 1.64090 1.45840 1.38552 1.23179 0.87571 1.03680 0.88275 1.86171 1.44019 1.79901 1.11857 0.95032 0.92987 0.94868 0.94114 0.87573 0.92421 0.84066 0.83899 0.84927 0.84575 0.85514 0.74410 0.88140 0.83905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 8.55 37.16 0.32 -2.69 16 2 C -0.14 -3.35 5.48 -26.73 -0.15 -3.50 16 3 C 0.22 5.66 2.22 -27.88 -0.06 5.60 16 4 H 0.04 1.23 7.11 -51.93 -0.37 0.86 16 5 C -0.52 -14.39 8.89 -34.44 -0.31 -14.69 16 6 H 0.07 1.83 7.81 -52.48 -0.41 1.42 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.64 16 8 N -0.89 -25.00 11.29 55.43 0.63 -24.38 16 9 Si 0.91 21.00 29.54 -169.99 -5.02 15.98 16 10 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 O -0.35 -7.83 9.68 -41.10 -0.40 -8.23 16 14 C 0.47 8.94 5.17 32.08 0.17 9.10 16 15 O -0.50 -10.16 9.13 -19.38 -0.18 -10.34 16 16 C -0.18 -2.43 9.86 -39.35 -0.39 -2.82 16 17 C -0.02 -0.27 9.80 -37.17 -0.36 -0.63 16 18 C -0.06 -0.77 4.49 -105.04 -0.47 -1.24 16 19 C -0.09 -0.95 9.78 -39.09 -0.38 -1.34 16 20 C -0.12 -1.38 9.98 -39.56 -0.39 -1.77 16 21 C 0.09 1.14 6.45 -38.84 -0.25 0.89 16 22 C 0.08 1.22 6.53 -83.52 -0.55 0.67 16 23 C -0.04 -0.52 6.51 -38.99 -0.25 -0.77 16 24 N -0.65 -9.69 5.47 -9.69 -0.05 -9.75 16 25 C 0.49 7.40 7.94 -10.82 -0.09 7.31 16 26 O -0.52 -9.27 17.95 5.54 0.10 -9.17 16 27 C 0.05 0.59 7.16 36.03 0.26 0.85 16 28 O -0.31 -3.84 10.44 -19.33 -0.20 -4.04 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.05 1.18 7.75 -51.93 -0.40 0.78 16 31 H 0.03 0.68 6.05 -51.93 -0.31 0.36 16 32 H 0.04 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.11 2.85 5.95 -51.93 -0.31 2.55 16 34 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 35 H 0.14 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.14 0.94 8.06 -52.49 -0.42 0.52 16 37 H 0.13 1.03 8.06 -52.49 -0.42 0.60 16 38 H 0.14 1.21 8.06 -52.48 -0.42 0.79 16 39 H 0.13 1.96 7.03 -52.49 -0.37 1.59 16 40 H 0.42 5.86 8.89 -40.82 -0.36 5.50 16 41 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.14 1.25 8.14 -51.93 -0.42 0.82 16 LS Contribution 352.63 15.07 5.31 5.31 Total: -1.00 -32.82 352.63 -7.87 -40.69 By element: Atomic # 1 Polarization: 12.34 SS G_CDS: -5.05 Total: 7.29 kcal Atomic # 6 Polarization: -0.36 SS G_CDS: -3.00 Total: -3.37 kcal Atomic # 7 Polarization: -34.70 SS G_CDS: 0.57 Total: -34.12 kcal Atomic # 8 Polarization: -31.11 SS G_CDS: -0.68 Total: -31.79 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -5.02 Total: 15.98 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -32.82 -7.87 -40.69 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344580568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.913 kcal (2) G-P(sol) polarization free energy of solvation -32.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.869 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds