Wall clock time and date at job start Tue Mar 31 2020 16:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52996 * 109.47007 * 2 1 4 4 H 1.09006 * 109.47066 * 55.00211 * 3 2 1 5 5 C 1.50703 * 109.46930 * 175.00086 * 3 2 1 6 6 H 1.08004 * 120.00000 * 120.00098 * 5 3 2 7 7 C 1.37874 * 120.00287 * 300.00107 * 5 3 2 8 8 N 1.31517 * 119.99882 * 359.97438 * 7 5 3 9 9 Si 1.86794 * 120.00560 * 180.02562 * 7 5 3 10 10 H 1.48499 * 109.47237 * 89.99640 * 9 7 5 11 11 H 1.48494 * 109.47475 * 210.00036 * 9 7 5 12 12 H 1.48507 * 109.46918 * 330.00217 * 9 7 5 13 13 O 1.42899 * 109.47390 * 295.00334 * 3 2 1 14 14 C 1.34923 * 117.00191 * 90.00201 * 13 3 2 15 15 O 1.21652 * 120.00101 * 359.97438 * 14 13 3 16 16 C 1.41780 * 120.00037 * 180.02562 * 14 13 3 17 17 C 1.35099 * 119.99893 * 187.20926 * 16 14 13 18 18 C 1.46960 * 120.00225 * 10.77549 * 17 16 14 19 19 C 1.39990 * 120.08050 * 223.92422 * 18 17 16 20 20 C 1.37784 * 120.08031 * 179.97438 * 19 18 17 21 21 C 1.38738 * 120.11057 * 359.97412 * 20 19 18 22 22 C 1.39729 * 120.14053 * 0.04863 * 21 20 19 23 23 C 1.38038 * 120.15006 * 359.95191 * 22 21 20 24 24 N 1.40258 * 119.17513 * 179.67631 * 22 21 20 25 25 C 1.35083 * 118.97495 * 16.08421 * 24 22 21 26 26 O 1.21303 * 120.13389 * 181.36317 * 25 24 22 27 27 C 1.50747 * 119.72814 * 1.08159 * 25 24 22 28 28 O 1.35870 * 120.49258 * 180.02562 * 21 20 19 29 29 H 1.09001 * 109.47419 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46968 * 299.99983 * 1 2 3 31 31 H 1.08995 * 109.46927 * 59.99430 * 1 2 3 32 32 H 1.08997 * 109.46622 * 240.00281 * 2 1 3 33 33 H 1.09001 * 109.47187 * 119.99903 * 2 1 3 34 34 H 0.96998 * 120.00115 * 179.97438 * 8 7 5 35 35 H 1.08004 * 119.99934 * 7.21641 * 16 14 13 36 36 H 1.08002 * 119.99798 * 190.76627 * 17 16 14 37 37 H 1.07997 * 119.96431 * 359.97438 * 19 18 17 38 38 H 1.08008 * 119.94787 * 180.02562 * 20 19 18 39 39 H 1.07999 * 120.16021 * 179.97438 * 23 22 21 40 40 H 0.96993 * 120.50811 * 195.84517 * 24 22 21 41 41 H 1.09004 * 109.43862 * 88.94216 * 27 25 24 42 42 H 1.09004 * 109.44150 * 208.86789 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8419 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1434 0.8783 1.2279 8 7 3.4063 0.3374 2.1733 9 14 6.0049 0.8811 1.3818 10 1 6.4417 2.1141 2.0849 11 1 6.4396 -0.3099 2.1548 12 1 6.6136 0.8416 0.0277 13 8 1.6619 2.0814 -1.2210 14 6 0.4727 2.7185 -1.2363 15 8 -0.2240 2.7301 -0.2391 16 6 0.0344 3.3735 -2.4148 17 6 -1.0830 4.1325 -2.3901 18 6 -1.7109 4.4743 -1.1062 19 6 -3.1009 4.3927 -0.9611 20 6 -3.6895 4.7127 0.2429 21 6 -2.9067 5.1160 1.3149 22 6 -1.5187 5.2004 1.1777 23 6 -0.9203 4.8818 -0.0247 24 7 -0.7475 5.6170 2.2726 25 6 -1.3022 5.6103 3.5042 26 8 -0.6624 5.9897 4.4624 27 6 -2.7218 5.1352 3.6821 28 8 -3.4790 5.4329 2.5058 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8933 -0.5138 -0.8900 33 1 1.8934 -0.5138 0.8900 34 1 3.8294 -0.0611 2.9498 35 1 0.5938 3.2657 -3.3324 36 1 -1.5147 4.4882 -3.3140 37 1 -3.7126 4.0786 -1.7939 38 1 -4.7621 4.6486 0.3525 39 1 0.1524 4.9473 -0.1311 40 1 0.1711 5.9023 2.1477 41 1 -2.7253 4.0588 3.8538 42 1 -3.1689 5.6406 4.5381 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001344580568.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:11 Heat of formation + Delta-G solvation = -120.817063 kcal Electronic energy + Delta-G solvation = -28843.532929 eV Core-core repulsion = 24754.170380 eV Total energy + Delta-G solvation = -4089.362549 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.48585 -41.54797 -39.98664 -38.90114 -37.60293 -36.33967 -35.45266 -34.45978 -33.30619 -31.10273 -30.82939 -29.41248 -28.70693 -26.09175 -25.00336 -24.16161 -23.72563 -21.97232 -21.19693 -20.18555 -19.86411 -19.17865 -18.64557 -18.51250 -17.92007 -17.31700 -17.16980 -16.78209 -16.44757 -16.19378 -15.75240 -15.60670 -15.22065 -15.10064 -14.88111 -14.65811 -14.37898 -13.98750 -13.91225 -13.84686 -13.37948 -13.32600 -13.11879 -12.85219 -12.80735 -12.59874 -12.50538 -12.29650 -12.16082 -11.91859 -11.74374 -11.38781 -11.32052 -11.09198 -10.77289 -10.63758 -10.48464 -9.24852 -8.83625 -8.29725 -6.46076 -0.46477 0.13663 0.69009 1.17247 1.37482 1.38401 1.50309 1.68907 2.18428 2.23264 2.28552 2.57483 2.77884 2.90249 3.00290 3.54932 3.72950 3.94470 4.09793 4.15252 4.22403 4.30419 4.37924 4.41355 4.45473 4.55451 4.61688 4.79701 4.83980 4.87360 5.02298 5.06069 5.10235 5.23291 5.31936 5.38439 5.42992 5.49866 5.56525 5.62653 5.68717 5.75809 6.01737 6.21716 6.22694 6.58857 6.60825 7.11264 7.30521 8.76448 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011434 B = 0.004256 C = 0.003485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2448.255586 B = 6576.645871 C = 8033.342735 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.131 4.131 3 C 0.230 3.770 4 H 0.002 0.998 5 C -0.549 4.549 6 H 0.063 0.937 7 C 0.018 3.982 8 N -0.915 5.915 9 Si 0.974 3.026 10 H -0.275 1.275 11 H -0.276 1.276 12 H -0.261 1.261 13 O -0.363 6.363 14 C 0.466 3.534 15 O -0.524 6.524 16 C -0.215 4.215 17 C 0.024 3.976 18 C -0.082 4.082 19 C -0.072 4.072 20 C -0.118 4.118 21 C 0.072 3.928 22 C 0.059 3.941 23 C -0.054 4.054 24 N -0.661 5.661 25 C 0.483 3.517 26 O -0.558 6.558 27 C 0.056 3.944 28 O -0.303 6.303 29 H 0.056 0.944 30 H 0.032 0.968 31 H 0.042 0.958 32 H 0.042 0.958 33 H 0.079 0.921 34 H 0.268 0.732 35 H 0.166 0.834 36 H 0.202 0.798 37 H 0.177 0.823 38 H 0.168 0.832 39 H 0.103 0.897 40 H 0.412 0.588 41 H 0.111 0.889 42 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.508 8.861 -8.933 20.756 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.169 4.169 3 C 0.175 3.825 4 H 0.019 0.981 5 C -0.586 4.586 6 H 0.081 0.919 7 C -0.182 4.182 8 N -0.553 5.553 9 Si 0.798 3.202 10 H -0.201 1.201 11 H -0.201 1.201 12 H -0.185 1.185 13 O -0.280 6.280 14 C 0.315 3.685 15 O -0.418 6.418 16 C -0.234 4.234 17 C 0.006 3.994 18 C -0.083 4.083 19 C -0.090 4.090 20 C -0.136 4.136 21 C 0.026 3.974 22 C -0.036 4.036 23 C -0.074 4.074 24 N -0.306 5.306 25 C 0.272 3.728 26 O -0.436 6.436 27 C -0.021 4.021 28 O -0.217 6.217 29 H 0.075 0.925 30 H 0.051 0.949 31 H 0.061 0.939 32 H 0.061 0.939 33 H 0.098 0.902 34 H 0.077 0.923 35 H 0.184 0.816 36 H 0.219 0.781 37 H 0.194 0.806 38 H 0.185 0.815 39 H 0.121 0.879 40 H 0.250 0.750 41 H 0.129 0.871 42 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -16.665 8.984 -7.805 20.478 hybrid contribution 2.267 -0.248 0.915 2.457 sum -14.399 8.736 -6.890 18.196 Atomic orbital electron populations 1.21643 0.95984 1.00228 1.00101 1.21874 0.94682 0.98519 1.01848 1.19752 0.94047 0.89187 0.79474 0.98072 1.21379 0.91013 1.39609 1.06616 0.91891 1.25757 1.03919 0.94005 0.94502 1.70019 1.37287 1.38139 1.09826 0.85305 0.78239 0.77915 0.78742 1.20089 1.20061 1.18535 1.86178 1.36560 1.63481 1.41775 1.21013 0.79765 0.77715 0.90025 1.90897 1.54760 1.59014 1.37082 1.21730 1.00574 1.03728 0.97361 1.22956 0.89773 0.89203 0.97464 1.19009 0.94142 1.01414 0.93695 1.21433 0.92426 0.97085 0.98046 1.20716 1.01353 1.00520 0.91035 1.19071 0.88665 1.01689 0.87983 1.18032 0.90623 1.05942 0.88991 1.20576 0.98545 0.96914 0.91400 1.43824 1.16573 1.63927 1.06314 1.22189 0.91465 0.77218 0.81953 1.90773 1.65375 1.47870 1.39583 1.23356 0.85369 1.04507 0.88912 1.86172 1.43665 1.80017 1.11827 0.92536 0.94907 0.93916 0.93937 0.90228 0.92259 0.81620 0.78138 0.80555 0.81501 0.87934 0.74986 0.87146 0.80832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.30 8.55 71.98 0.62 -4.69 16 2 C -0.13 -6.64 5.48 30.59 0.17 -6.47 16 3 C 0.23 12.43 2.22 29.85 0.07 12.49 16 4 H 0.00 0.09 7.11 -2.38 -0.02 0.08 16 5 C -0.55 -31.42 8.89 25.60 0.23 -31.19 16 6 H 0.06 3.55 7.81 -2.91 -0.02 3.53 16 7 C 0.02 1.00 5.29 84.65 0.45 1.45 16 8 N -0.91 -53.42 11.29 21.45 0.24 -53.18 16 9 Si 0.97 43.77 29.54 68.60 2.03 45.80 16 10 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 11 H -0.28 -11.94 7.11 99.48 0.71 -11.23 16 12 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 13 O -0.36 -17.04 9.68 -58.39 -0.57 -17.60 16 14 C 0.47 17.84 5.17 68.70 0.36 18.20 16 15 O -0.52 -21.80 9.13 19.34 0.18 -21.62 16 16 C -0.22 -5.40 9.86 22.42 0.22 -5.18 16 17 C 0.02 0.42 9.80 23.83 0.23 0.65 16 18 C -0.08 -1.85 4.49 -20.14 -0.09 -1.94 16 19 C -0.07 -1.23 9.78 22.59 0.22 -1.01 16 20 C -0.12 -2.25 9.98 22.28 0.22 -2.03 16 21 C 0.07 1.84 6.45 22.75 0.15 1.99 16 22 C 0.06 1.75 6.53 38.11 0.25 2.00 16 23 C -0.05 -1.59 6.51 22.65 0.15 -1.44 16 24 N -0.66 -21.01 5.47 -302.76 -1.66 -22.67 16 25 C 0.48 15.23 7.94 87.62 0.70 15.93 16 26 O -0.56 -21.11 17.95 -3.10 -0.06 -21.16 16 27 C 0.06 1.27 7.16 71.25 0.51 1.78 16 28 O -0.30 -7.20 10.44 -92.09 -0.96 -8.16 16 29 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.03 1.51 7.75 -2.39 -0.02 1.49 16 31 H 0.04 1.74 6.05 -2.39 -0.01 1.73 16 32 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 33 H 0.08 4.46 5.95 -2.39 -0.01 4.44 16 34 H 0.27 14.76 8.31 -92.71 -0.77 13.98 16 35 H 0.17 3.27 8.06 -2.91 -0.02 3.25 16 36 H 0.20 1.25 8.06 -2.91 -0.02 1.22 16 37 H 0.18 1.51 8.06 -2.91 -0.02 1.49 16 38 H 0.17 2.16 8.06 -2.91 -0.02 2.14 16 39 H 0.10 3.44 7.03 -2.91 -0.02 3.42 16 40 H 0.41 13.01 8.89 -92.71 -0.82 12.19 16 41 H 0.11 2.32 8.14 -2.39 -0.02 2.30 16 42 H 0.17 2.80 8.14 -2.38 -0.02 2.78 16 Total: -1.00 -76.95 352.63 3.89 -73.06 By element: Atomic # 1 Polarization: 24.75 SS G_CDS: 0.25 Total: 24.99 kcal Atomic # 6 Polarization: -3.90 SS G_CDS: 4.44 Total: 0.54 kcal Atomic # 7 Polarization: -74.43 SS G_CDS: -1.42 Total: -75.85 kcal Atomic # 8 Polarization: -67.14 SS G_CDS: -1.41 Total: -68.54 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -76.95 3.89 -73.06 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001344580568.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.754 kcal (2) G-P(sol) polarization free energy of solvation -76.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.706 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds