Wall clock time and date at job start Tue Mar 31 2020 16:21:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.44469 * 2 1 4 4 O 1.20828 * 119.99927 * 264.93124 * 3 2 1 5 5 O 1.34225 * 120.00148 * 84.92746 * 3 2 1 6 6 C 1.45204 * 116.99941 * 180.02562 * 5 3 2 7 7 H 1.08995 * 109.47194 * 329.99801 * 6 5 3 8 8 C 1.50707 * 109.47048 * 209.99963 * 6 5 3 9 9 H 1.07996 * 119.99905 * 359.97438 * 8 6 5 10 10 C 1.37874 * 119.99814 * 179.97438 * 8 6 5 11 11 N 1.31516 * 120.00032 * 0.02562 * 10 8 6 12 12 Si 1.86796 * 119.99925 * 179.97438 * 10 8 6 13 13 H 1.48503 * 109.46993 * 0.02562 * 12 10 8 14 14 H 1.48504 * 109.47186 * 120.00094 * 12 10 8 15 15 H 1.48501 * 109.47457 * 240.00379 * 12 10 8 16 16 C 1.53002 * 109.47171 * 90.00105 * 6 5 3 17 17 C 1.53002 * 117.49511 * 8.74529 * 16 6 5 18 18 C 1.53004 * 117.49792 * 300.08717 * 16 6 5 19 19 O 1.42995 * 109.44050 * 119.92896 * 2 1 3 20 20 C 1.35982 * 116.71935 * 166.42989 * 19 2 1 21 21 C 1.38396 * 120.66909 * 147.21085 * 20 19 2 22 22 C 1.38315 * 119.87423 * 180.02562 * 21 20 19 23 23 C 1.38280 * 120.26134 * 0.03502 * 22 21 20 24 24 C 1.38285 * 120.19583 * 0.23290 * 23 22 21 25 25 C 1.38507 * 119.81594 * 359.44659 * 24 23 22 26 26 N 1.40206 * 120.73806 * 180.35218 * 25 24 23 27 27 C 1.35084 * 118.98925 * 195.71130 * 26 25 24 28 28 O 1.21288 * 120.13618 * 181.68680 * 27 26 25 29 29 H 1.09000 * 109.47248 * 300.07387 * 1 2 3 30 30 H 1.09004 * 109.46714 * 60.07026 * 1 2 3 31 31 H 1.08993 * 109.47725 * 180.02562 * 1 2 3 32 32 H 0.97004 * 119.99733 * 179.97438 * 11 10 8 33 33 H 1.08994 * 115.54968 * 154.41614 * 16 6 5 34 34 H 1.08994 * 117.50382 * 0.02562 * 17 16 6 35 35 H 1.09005 * 117.49593 * 145.01953 * 17 16 6 36 36 H 1.08996 * 117.49698 * 214.97955 * 18 16 6 37 37 H 1.09002 * 117.49563 * 0.02562 * 18 16 6 38 38 H 1.07997 * 120.06633 * 0.05744 * 21 20 19 39 39 H 1.08002 * 119.87090 * 180.02562 * 22 21 20 40 40 H 1.08002 * 119.89945 * 179.97438 * 23 22 21 41 41 H 1.08000 * 120.08948 * 179.71633 * 24 23 22 42 42 H 0.97010 * 120.50387 * 15.68986 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0316 1.4211 0.0000 4 8 2.3199 1.9600 -1.0423 5 8 2.1581 2.0882 1.1579 6 6 2.6467 3.4535 1.0821 7 1 3.3100 3.5548 0.2232 8 6 3.4023 3.7873 2.3425 9 1 3.5047 3.0476 3.1227 10 6 3.9628 5.0371 2.4997 11 7 3.8376 5.9381 1.5498 12 14 4.8988 5.4512 4.0623 13 1 4.8951 4.2744 4.9680 14 1 6.2992 5.8080 3.7206 15 1 4.2466 6.6002 4.7403 16 6 1.4631 4.4108 0.9282 17 6 0.0576 3.8280 1.0891 18 6 0.5648 4.2324 -0.2974 19 8 2.0059 -0.6728 1.1686 20 6 3.3228 -1.0113 1.1855 21 6 4.0341 -1.0206 2.3726 22 6 5.3731 -1.3671 2.3708 23 6 6.0042 -1.7037 1.1873 24 6 5.3014 -1.6914 -0.0036 25 6 3.9586 -1.3517 -0.0074 26 7 3.2257 -1.3401 -1.2026 27 6 2.0319 -0.7086 -1.2324 28 8 1.3665 -0.7118 -2.2464 29 1 -0.3634 0.5150 0.8893 30 1 -0.3633 0.5128 -0.8907 31 1 -0.3634 -1.0276 0.0005 32 1 4.2316 6.8176 1.6606 33 1 1.6307 5.4267 1.2858 34 1 -0.0239 2.7628 1.3049 35 1 -0.6996 4.4607 1.5522 36 1 0.1412 5.1309 -0.7459 37 1 0.8168 3.4327 -0.9939 38 1 3.5445 -0.7582 3.2988 39 1 5.9281 -1.3747 3.2973 40 1 7.0501 -1.9729 1.1925 41 1 5.7971 -1.9501 -0.9276 42 1 3.5708 -1.7786 -1.9961 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001346705880.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:21:16 Heat of formation + Delta-G solvation = -88.392092 kcal Electronic energy + Delta-G solvation = -29956.993829 eV Core-core repulsion = 25869.037332 eV Total energy + Delta-G solvation = -4087.956497 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.92289 -39.79643 -38.92984 -37.63429 -36.58011 -35.24935 -34.86184 -32.89347 -32.43596 -30.31875 -29.02419 -28.02068 -25.61446 -23.90769 -23.29872 -22.88453 -22.04084 -21.48465 -19.61527 -19.23974 -18.87537 -17.98160 -17.48817 -16.74286 -16.34207 -16.24548 -15.90660 -15.44499 -15.01242 -14.83766 -14.52265 -14.37614 -14.00377 -13.87583 -13.65834 -13.23857 -12.86874 -12.54297 -12.45325 -12.37197 -12.19428 -11.85386 -11.64786 -11.41600 -11.27390 -11.16960 -11.02613 -10.87065 -10.61907 -10.38226 -10.29137 -10.12395 -9.84967 -9.57030 -9.22751 -8.72755 -8.59774 -8.51517 -8.03300 -6.24575 -4.31981 0.99091 1.20323 2.02512 2.41980 2.59259 3.08238 3.19892 3.25258 3.29249 3.36980 3.70803 3.86067 4.26073 4.49747 4.57427 4.85155 4.88680 5.08219 5.14548 5.15249 5.25998 5.33370 5.50963 5.58832 5.72062 5.78462 5.90046 5.97741 6.01606 6.06540 6.07618 6.36990 6.41833 6.43562 6.55650 6.59030 6.66019 6.72933 6.95236 7.08778 7.18620 7.41950 7.50201 7.64695 7.72038 8.01352 8.35375 8.77079 9.32340 10.82757 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011032 B = 0.005725 C = 0.004239 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2537.484060 B = 4889.809576 C = 6604.059036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.116 3.884 3 C 0.442 3.558 4 O -0.492 6.492 5 O -0.327 6.327 6 C 0.247 3.753 7 H 0.051 0.949 8 C -0.516 4.516 9 H 0.073 0.927 10 C 0.065 3.935 11 N -0.885 5.885 12 Si 0.910 3.090 13 H -0.269 1.269 14 H -0.282 1.282 15 H -0.281 1.281 16 C -0.117 4.117 17 C -0.194 4.194 18 C -0.211 4.211 19 O -0.277 6.277 20 C 0.076 3.924 21 C -0.090 4.090 22 C -0.109 4.109 23 C -0.110 4.110 24 C -0.125 4.125 25 C 0.089 3.911 26 N -0.655 5.655 27 C 0.519 3.481 28 O -0.488 6.488 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.266 0.734 33 H 0.132 0.868 34 H 0.084 0.916 35 H 0.080 0.920 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.144 0.856 39 H 0.135 0.865 40 H 0.132 0.868 41 H 0.132 0.868 42 H 0.418 0.582 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.098 -15.154 0.244 15.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.072 3.928 3 C 0.282 3.718 4 O -0.381 6.381 5 O -0.242 6.242 6 C 0.194 3.806 7 H 0.069 0.931 8 C -0.554 4.554 9 H 0.091 0.909 10 C -0.138 4.138 11 N -0.522 5.522 12 Si 0.737 3.263 13 H -0.193 1.193 14 H -0.207 1.207 15 H -0.207 1.207 16 C -0.136 4.136 17 C -0.231 4.231 18 C -0.248 4.248 19 O -0.191 6.191 20 C 0.030 3.970 21 C -0.108 4.108 22 C -0.128 4.128 23 C -0.128 4.128 24 C -0.145 4.145 25 C -0.006 4.006 26 N -0.302 5.302 27 C 0.304 3.696 28 O -0.360 6.360 29 H 0.112 0.888 30 H 0.117 0.883 31 H 0.104 0.896 32 H 0.076 0.924 33 H 0.150 0.850 34 H 0.102 0.898 35 H 0.098 0.902 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.162 0.838 39 H 0.153 0.847 40 H 0.149 0.851 41 H 0.150 0.850 42 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -0.401 -14.677 -0.410 14.688 hybrid contribution 0.795 0.434 0.012 0.906 sum 0.394 -14.243 -0.398 14.254 Atomic orbital electron populations 1.21802 0.86187 1.05232 1.05589 1.21989 0.99389 0.87804 0.83568 1.23141 0.76078 0.88244 0.84343 1.90681 1.45177 1.68903 1.33375 1.86564 1.74972 1.31629 1.31012 1.20295 0.90501 0.70192 0.99566 0.93125 1.20941 1.33264 0.99054 1.02110 0.90917 1.24905 0.96024 0.95561 0.97341 1.69991 1.44174 1.05418 1.32604 0.86245 0.79266 0.78591 0.82243 1.19310 1.20745 1.20664 1.23028 0.89711 1.02807 0.98045 1.22833 0.99333 1.00769 1.00126 1.23159 1.07059 1.02890 0.91677 1.86350 1.21699 1.72630 1.38460 1.18656 0.83750 1.01491 0.93092 1.20622 0.93460 0.99948 0.96820 1.21035 0.93612 0.99340 0.98776 1.20971 1.00016 1.00171 0.91671 1.20587 0.90839 1.03530 0.99569 1.18117 0.92958 1.04523 0.85044 1.43601 1.19494 1.54364 1.12775 1.20511 0.80945 0.78617 0.89519 1.90767 1.55317 1.57953 1.31987 0.88806 0.88329 0.89589 0.92377 0.85040 0.89773 0.90153 0.90265 0.89083 0.83820 0.84690 0.85050 0.85011 0.74259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.88 8.41 37.15 0.31 -1.57 16 2 C 0.12 2.03 1.06 -92.90 -0.10 1.94 16 3 C 0.44 9.50 5.37 36.01 0.19 9.69 16 4 O -0.49 -11.82 13.31 -18.75 -0.25 -12.07 16 5 O -0.33 -7.62 8.14 -44.42 -0.36 -7.98 16 6 C 0.25 6.43 2.41 -27.88 -0.07 6.37 16 7 H 0.05 1.49 7.16 -51.93 -0.37 1.12 16 8 C -0.52 -13.96 8.90 -34.44 -0.31 -14.27 16 9 H 0.07 1.94 7.81 -52.49 -0.41 1.53 16 10 C 0.06 1.72 5.20 -17.82 -0.09 1.63 16 11 N -0.88 -24.50 11.59 55.43 0.64 -23.86 16 12 Si 0.91 20.43 29.54 -169.99 -5.02 15.41 16 13 H -0.27 -5.89 7.11 56.52 0.40 -5.49 16 14 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 15 H -0.28 -6.24 7.11 56.52 0.40 -5.83 16 16 C -0.12 -2.87 5.27 -90.62 -0.48 -3.35 16 17 C -0.19 -4.00 9.80 -26.69 -0.26 -4.26 16 18 C -0.21 -4.60 9.85 -26.69 -0.26 -4.86 16 19 O -0.28 -4.62 9.61 -33.58 -0.32 -4.94 16 20 C 0.08 1.20 6.06 -39.09 -0.24 0.96 16 21 C -0.09 -1.23 10.00 -39.49 -0.39 -1.62 16 22 C -0.11 -1.23 10.04 -39.54 -0.40 -1.62 16 23 C -0.11 -1.15 10.04 -39.55 -0.40 -1.54 16 24 C -0.12 -1.44 9.95 -39.46 -0.39 -1.83 16 25 C 0.09 1.28 6.54 -83.50 -0.55 0.73 16 26 N -0.66 -9.43 5.47 -9.67 -0.05 -9.49 16 27 C 0.52 8.94 6.28 -10.82 -0.07 8.87 16 28 O -0.49 -9.11 17.01 5.55 0.09 -9.02 16 29 H 0.09 1.26 7.81 -51.93 -0.41 0.85 16 30 H 0.10 1.44 7.86 -51.93 -0.41 1.03 16 31 H 0.09 1.02 8.14 -51.93 -0.42 0.59 16 32 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 33 H 0.13 3.49 6.46 -51.93 -0.34 3.15 16 34 H 0.08 1.68 6.57 -51.93 -0.34 1.33 16 35 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 36 H 0.08 1.60 8.14 -51.93 -0.42 1.17 16 37 H 0.09 2.08 5.37 -51.93 -0.28 1.80 16 38 H 0.14 1.82 8.06 -52.49 -0.42 1.39 16 39 H 0.14 1.16 8.06 -52.49 -0.42 0.73 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 41 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 42 H 0.42 4.75 8.89 -40.82 -0.36 4.39 16 LS Contribution 354.05 15.07 5.34 5.34 Total: -1.00 -32.05 354.05 -8.44 -40.49 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -5.01 Total: 10.87 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -3.49 Total: -4.74 kcal Atomic # 7 Polarization: -33.94 SS G_CDS: 0.59 Total: -33.35 kcal Atomic # 8 Polarization: -33.18 SS G_CDS: -0.84 Total: -34.02 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.05 -8.44 -40.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001346705880.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.905 kcal (2) G-P(sol) polarization free energy of solvation -32.050 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.955 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.487 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds