Wall clock time and date at job start Tue Mar 31 2020 17:50:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46858 * 2 1 4 4 C 1.50701 * 109.46771 * 240.00390 * 2 1 3 5 5 H 1.08008 * 119.99658 * 239.99967 * 4 2 1 6 6 C 1.37873 * 120.00396 * 59.99847 * 4 2 1 7 7 N 1.31519 * 119.99722 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00230 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47023 * 60.00082 * 8 6 4 10 10 H 1.48499 * 109.46917 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46828 * 299.99979 * 8 6 4 12 12 C 1.50696 * 109.47219 * 120.00154 * 2 1 3 13 13 O 1.21282 * 120.00038 * 34.73598 * 12 2 1 14 14 N 1.34772 * 120.00128 * 214.73275 * 12 2 1 15 15 C 1.47159 * 120.97383 * 354.64168 * 14 12 2 16 16 C 1.53297 * 108.35396 * 230.48163 * 15 14 12 17 17 O 1.42940 * 109.23817 * 307.75430 * 16 15 14 18 18 C 1.43080 * 114.14486 * 62.72156 * 17 16 15 19 19 C 1.52691 * 109.42087 * 56.67928 * 18 17 16 20 20 C 1.53014 * 109.97127 * 50.29042 * 19 18 17 21 21 S 1.81672 * 109.00822 * 63.76119 * 20 19 18 22 22 O 1.42098 * 108.66577 * 191.43616 * 21 20 19 23 23 O 1.42105 * 108.75123 * 60.12495 * 21 20 19 24 24 C 1.81663 * 101.29592 * 305.76322 * 21 20 19 25 25 C 1.52710 * 109.38631 * 177.76660 * 18 17 16 26 26 C 1.47128 * 120.97624 * 174.62104 * 14 12 2 27 27 H 1.08999 * 109.46505 * 304.90142 * 1 2 3 28 28 H 1.08995 * 109.47091 * 64.90173 * 1 2 3 29 29 H 1.08996 * 109.47252 * 184.90647 * 1 2 3 30 30 H 0.96998 * 119.99696 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.68915 * 110.76310 * 15 14 12 32 32 H 1.09007 * 109.68349 * 350.19753 * 15 14 12 33 33 H 1.08999 * 109.51009 * 67.68290 * 16 15 14 34 34 H 1.08999 * 109.51063 * 187.82683 * 16 15 14 35 35 H 1.08999 * 109.38811 * 170.44823 * 19 18 17 36 36 H 1.09001 * 109.38859 * 290.13934 * 19 18 17 37 37 H 1.09005 * 109.54960 * 303.90564 * 20 19 18 38 38 H 1.09005 * 109.62785 * 183.66842 * 20 19 18 39 39 H 1.08994 * 109.55407 * 294.39815 * 24 21 20 40 40 H 1.09004 * 109.63099 * 174.15279 * 24 21 20 41 41 H 1.09001 * 109.38884 * 69.85175 * 25 18 17 42 42 H 1.09004 * 109.38653 * 189.65441 * 25 18 17 43 43 H 1.08998 * 109.68659 * 249.04394 * 26 14 12 44 44 H 1.09004 * 109.68479 * 9.56626 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3224 -1.1194 -4.0081 9 1 1.8279 -2.5196 -4.0083 10 1 1.8277 -0.4190 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 6 2.0324 -0.7104 1.2304 13 8 1.4208 -1.6585 1.6755 14 7 3.1614 -0.2923 1.8362 15 6 3.9831 0.7788 1.2505 16 6 5.4368 0.2956 1.1936 17 8 5.8287 -0.1720 2.4863 18 6 5.0801 -1.2985 2.9529 19 6 5.1895 -2.4357 1.9399 20 6 6.6576 -2.6789 1.5838 21 16 7.5435 -3.2313 3.0706 22 8 8.9393 -3.1994 2.8064 23 8 6.9508 -4.4368 3.5341 24 6 7.1424 -1.8994 4.2391 25 6 5.6222 -1.7402 4.3105 26 6 3.6082 -0.8931 3.1028 27 1 -0.3632 0.5880 0.8429 28 1 -0.3633 0.4359 -0.9306 29 1 -0.3633 -1.0239 0.0879 30 1 0.7088 1.1615 -3.4843 31 1 3.9173 1.6728 1.8705 32 1 3.6308 1.0028 0.2436 33 1 5.5225 -0.5163 0.4714 34 1 6.0831 1.1204 0.8935 35 1 4.7658 -3.3440 2.3683 36 1 4.6375 -2.1712 1.0380 37 1 7.1021 -1.7537 1.2170 38 1 6.7251 -3.4466 0.8128 39 1 7.5910 -0.9667 3.8972 40 1 7.5296 -2.1498 5.2268 41 1 5.3716 -0.9909 5.0614 42 1 5.1725 -2.6939 4.5868 43 1 3.5077 -0.1668 3.9093 44 1 3.0050 -1.7736 3.3244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001361720239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:28 Heat of formation + Delta-G solvation = -145.488892 kcal Electronic energy + Delta-G solvation = -28730.375472 eV Core-core repulsion = 24775.387023 eV Total energy + Delta-G solvation = -3954.988449 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.71230 -38.45902 -37.16250 -36.16066 -35.32324 -34.23019 -33.94029 -32.16833 -30.85972 -30.05245 -27.83448 -25.43483 -24.88069 -24.08309 -23.13923 -21.93777 -19.97516 -19.02687 -18.40810 -17.30501 -16.74781 -16.61430 -16.44257 -16.25185 -15.77332 -15.40677 -15.26001 -15.10915 -14.53226 -14.40131 -13.83458 -13.55181 -13.40874 -13.28862 -12.96829 -12.77882 -12.47987 -12.26987 -12.16371 -12.10948 -11.94137 -11.91973 -11.56031 -11.52541 -11.34754 -11.07664 -10.95141 -10.85420 -10.65159 -10.57054 -10.34693 -10.25111 -10.15119 -9.94751 -9.18016 -8.78028 -8.47753 -8.15224 -6.22559 -4.32102 -0.11144 2.50342 3.18338 3.24880 3.24953 3.31160 3.47602 3.52917 3.56624 3.78536 4.24579 4.28013 4.34897 4.43722 4.47040 4.73980 4.86570 4.99920 5.06745 5.09418 5.20002 5.32287 5.36527 5.38653 5.54588 5.57250 5.60195 5.68316 5.79147 5.89796 5.98258 6.06978 6.12622 6.66720 6.85488 6.88680 6.99438 7.04274 7.42221 7.62725 7.80516 7.97168 8.13672 8.67997 9.00910 9.34236 10.82735 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.016632 B = 0.004100 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.144546 B = 6827.233777 C = 7549.725122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.032 3.968 3 H 0.046 0.954 4 C -0.512 4.512 5 H 0.056 0.944 6 C 0.069 3.931 7 N -0.883 5.883 8 Si 0.898 3.102 9 H -0.275 1.275 10 H -0.285 1.285 11 H -0.276 1.276 12 C 0.532 3.468 13 O -0.557 6.557 14 N -0.625 5.625 15 C 0.076 3.924 16 C 0.039 3.961 17 O -0.372 6.372 18 C 0.090 3.910 19 C -0.137 4.137 20 C -0.595 4.595 21 S 2.413 3.587 22 O -0.948 6.948 23 O -0.940 6.940 24 C -0.594 4.594 25 C -0.093 4.093 26 C 0.092 3.908 27 H 0.009 0.991 28 H 0.091 0.909 29 H 0.039 0.961 30 H 0.265 0.735 31 H 0.066 0.934 32 H 0.119 0.881 33 H 0.066 0.934 34 H 0.106 0.894 35 H 0.095 0.905 36 H 0.103 0.897 37 H 0.138 0.862 38 H 0.135 0.865 39 H 0.143 0.857 40 H 0.133 0.867 41 H 0.097 0.903 42 H 0.099 0.901 43 H 0.072 0.928 44 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.390 0.283 10.948 15.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.011 3.989 3 H 0.064 0.936 4 C -0.550 4.550 5 H 0.074 0.926 6 C -0.134 4.134 7 N -0.521 5.521 8 Si 0.725 3.275 9 H -0.201 1.201 10 H -0.210 1.210 11 H -0.202 1.202 12 C 0.324 3.676 13 O -0.434 6.434 14 N -0.360 5.360 15 C -0.047 4.047 16 C -0.038 4.038 17 O -0.292 6.292 18 C 0.049 3.951 19 C -0.176 4.176 20 C -0.724 4.724 21 S 2.596 3.404 22 O -0.945 6.945 23 O -0.937 6.937 24 C -0.723 4.723 25 C -0.131 4.131 26 C -0.031 4.031 27 H 0.028 0.972 28 H 0.109 0.891 29 H 0.058 0.942 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.137 0.863 33 H 0.085 0.915 34 H 0.124 0.876 35 H 0.114 0.886 36 H 0.121 0.879 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.162 0.838 40 H 0.151 0.849 41 H 0.115 0.885 42 H 0.117 0.883 43 H 0.090 0.910 44 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 11.619 -0.787 11.260 16.199 hybrid contribution -0.234 0.329 -1.219 1.284 sum 11.385 -0.458 10.041 15.187 Atomic orbital electron populations 1.21662 0.96049 0.99847 1.01068 1.18931 0.94735 0.96259 0.88964 0.93596 1.20678 1.32398 1.12729 0.89198 0.92563 1.24895 0.94700 0.94855 0.98953 1.69860 1.35689 1.22466 1.24045 0.86562 0.79127 0.79976 0.81853 1.20056 1.21027 1.20153 1.22082 0.77827 0.83130 0.84536 1.90539 1.57604 1.28773 1.66459 1.48288 1.25725 1.38673 1.23348 1.22415 0.90418 0.89792 1.02110 1.23143 0.95913 1.00007 0.84773 1.87914 1.59171 1.47154 1.34925 1.22001 0.92875 0.86727 0.93462 1.21898 0.93111 0.99904 1.02669 1.30106 1.08709 1.13251 1.20351 1.08111 0.75717 0.77384 0.79170 1.93578 1.29178 1.87321 1.84471 1.93585 1.79115 1.41283 1.79767 1.30056 1.05237 1.20089 1.16966 1.21283 0.91109 1.04346 0.96385 1.22029 0.93004 1.00371 0.87723 0.97206 0.89074 0.94197 0.92483 0.91578 0.86265 0.91533 0.87564 0.88618 0.87907 0.84392 0.84659 0.83828 0.84886 0.88490 0.88264 0.91011 0.88091 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.08 8.78 37.16 0.33 -2.75 16 2 C 0.03 0.75 1.84 -92.92 -0.17 0.58 16 3 H 0.05 1.06 6.28 -51.93 -0.33 0.74 16 4 C -0.51 -12.90 8.40 -34.44 -0.29 -13.18 16 5 H 0.06 1.44 7.74 -52.48 -0.41 1.03 16 6 C 0.07 1.74 5.29 -17.82 -0.09 1.65 16 7 N -0.88 -23.04 11.30 55.43 0.63 -22.42 16 8 Si 0.90 19.89 29.54 -169.99 -5.02 14.86 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.81 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 12 C 0.53 11.37 6.64 -10.99 -0.07 11.30 16 13 O -0.56 -13.36 15.63 5.56 0.09 -13.28 16 14 N -0.62 -10.44 2.34 -172.22 -0.40 -10.85 16 15 C 0.08 1.08 6.31 -3.53 -0.02 1.06 16 16 C 0.04 0.45 6.12 37.31 0.23 0.68 16 17 O -0.37 -4.16 8.23 -35.23 -0.29 -4.45 16 18 C 0.09 1.02 0.67 -90.72 -0.06 0.95 16 19 C -0.14 -1.67 4.00 -26.88 -0.11 -1.78 16 20 C -0.59 -6.01 5.95 37.16 0.22 -5.79 16 21 S 2.41 25.17 5.30 -107.50 -0.57 24.60 16 22 O -0.95 -12.86 18.10 -57.82 -1.05 -13.90 16 23 O -0.94 -12.66 17.95 -57.82 -1.04 -13.69 16 24 C -0.59 -4.65 6.17 37.17 0.23 -4.42 16 25 C -0.09 -0.80 4.84 -26.87 -0.13 -0.93 16 26 C 0.09 1.26 5.30 -3.49 -0.02 1.25 16 27 H 0.01 0.20 8.14 -51.93 -0.42 -0.22 16 28 H 0.09 2.33 5.95 -51.93 -0.31 2.02 16 29 H 0.04 0.99 7.68 -51.93 -0.40 0.59 16 30 H 0.27 6.64 8.31 -40.82 -0.34 6.30 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.12 1.96 5.68 -51.93 -0.29 1.66 16 33 H 0.07 0.83 5.80 -51.93 -0.30 0.53 16 34 H 0.11 0.99 8.14 -51.93 -0.42 0.57 16 35 H 0.10 1.12 8.01 -51.93 -0.42 0.71 16 36 H 0.10 1.52 6.38 -51.93 -0.33 1.19 16 37 H 0.14 1.24 6.45 -51.92 -0.34 0.91 16 38 H 0.14 1.23 8.14 -51.92 -0.42 0.81 16 39 H 0.14 1.03 7.35 -51.93 -0.38 0.65 16 40 H 0.13 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.10 0.71 8.04 -51.93 -0.42 0.29 16 42 H 0.10 0.78 7.99 -51.93 -0.42 0.36 16 43 H 0.07 0.87 8.06 -51.93 -0.42 0.45 16 44 H 0.10 1.49 7.06 -51.93 -0.37 1.13 16 LS Contribution 347.51 15.07 5.24 5.24 Total: -1.00 -33.31 347.51 -8.75 -42.05 By element: Atomic # 1 Polarization: 9.58 SS G_CDS: -6.37 Total: 3.22 kcal Atomic # 6 Polarization: -11.42 SS G_CDS: 0.04 Total: -11.38 kcal Atomic # 7 Polarization: -33.49 SS G_CDS: 0.22 Total: -33.26 kcal Atomic # 8 Polarization: -43.03 SS G_CDS: -2.29 Total: -45.32 kcal Atomic # 14 Polarization: 19.89 SS G_CDS: -5.02 Total: 14.86 kcal Atomic # 16 Polarization: 25.17 SS G_CDS: -0.57 Total: 24.60 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -33.31 -8.75 -42.05 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361720239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.437 kcal (2) G-P(sol) polarization free energy of solvation -33.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.489 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds