Wall clock time and date at job start Tue Mar 31 2020 17:50:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.46858 * 2 1 4 4 C 1.50701 * 109.46771 * 240.00390 * 2 1 3 5 5 H 1.08008 * 119.99658 * 239.99967 * 4 2 1 6 6 C 1.37873 * 120.00396 * 59.99847 * 4 2 1 7 7 N 1.31519 * 119.99722 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00230 * 179.97438 * 6 4 2 9 9 H 1.48492 * 109.47023 * 60.00082 * 8 6 4 10 10 H 1.48499 * 109.46917 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46828 * 299.99979 * 8 6 4 12 12 C 1.50696 * 109.47219 * 120.00154 * 2 1 3 13 13 O 1.21282 * 120.00038 * 34.73598 * 12 2 1 14 14 N 1.34772 * 120.00128 * 214.73275 * 12 2 1 15 15 C 1.47159 * 120.97383 * 354.64168 * 14 12 2 16 16 C 1.53297 * 108.35396 * 230.48163 * 15 14 12 17 17 O 1.42940 * 109.23817 * 307.75430 * 16 15 14 18 18 C 1.43080 * 114.14486 * 62.72156 * 17 16 15 19 19 C 1.52691 * 109.42087 * 56.67928 * 18 17 16 20 20 C 1.53014 * 109.97127 * 50.29042 * 19 18 17 21 21 S 1.81672 * 109.00822 * 63.76119 * 20 19 18 22 22 O 1.42098 * 108.66577 * 191.43616 * 21 20 19 23 23 O 1.42105 * 108.75123 * 60.12495 * 21 20 19 24 24 C 1.81663 * 101.29592 * 305.76322 * 21 20 19 25 25 C 1.52710 * 109.38631 * 177.76660 * 18 17 16 26 26 C 1.47128 * 120.97624 * 174.62104 * 14 12 2 27 27 H 1.08999 * 109.46505 * 304.90142 * 1 2 3 28 28 H 1.08995 * 109.47091 * 64.90173 * 1 2 3 29 29 H 1.08996 * 109.47252 * 184.90647 * 1 2 3 30 30 H 0.96998 * 119.99696 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.68915 * 110.76310 * 15 14 12 32 32 H 1.09007 * 109.68349 * 350.19753 * 15 14 12 33 33 H 1.08999 * 109.51009 * 67.68290 * 16 15 14 34 34 H 1.08999 * 109.51063 * 187.82683 * 16 15 14 35 35 H 1.08999 * 109.38811 * 170.44823 * 19 18 17 36 36 H 1.09001 * 109.38859 * 290.13934 * 19 18 17 37 37 H 1.09005 * 109.54960 * 303.90564 * 20 19 18 38 38 H 1.09005 * 109.62785 * 183.66842 * 20 19 18 39 39 H 1.08994 * 109.55407 * 294.39815 * 24 21 20 40 40 H 1.09004 * 109.63099 * 174.15279 * 24 21 20 41 41 H 1.09001 * 109.38884 * 69.85175 * 25 18 17 42 42 H 1.09004 * 109.38653 * 189.65441 * 25 18 17 43 43 H 1.08998 * 109.68659 * 249.04394 * 26 14 12 44 44 H 1.09004 * 109.68479 * 9.56626 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6992 -0.2393 -2.4828 7 7 0.9435 0.8303 -2.6033 8 14 2.3224 -1.1194 -4.0081 9 1 1.8279 -2.5196 -4.0083 10 1 1.8277 -0.4190 -5.2205 11 1 3.8074 -1.1188 -4.0078 12 6 2.0324 -0.7104 1.2304 13 8 1.4208 -1.6585 1.6755 14 7 3.1614 -0.2923 1.8362 15 6 3.9831 0.7788 1.2505 16 6 5.4368 0.2956 1.1936 17 8 5.8287 -0.1720 2.4863 18 6 5.0801 -1.2985 2.9529 19 6 5.1895 -2.4357 1.9399 20 6 6.6576 -2.6789 1.5838 21 16 7.5435 -3.2313 3.0706 22 8 8.9393 -3.1994 2.8064 23 8 6.9508 -4.4368 3.5341 24 6 7.1424 -1.8994 4.2391 25 6 5.6222 -1.7402 4.3105 26 6 3.6082 -0.8931 3.1028 27 1 -0.3632 0.5880 0.8429 28 1 -0.3633 0.4359 -0.9306 29 1 -0.3633 -1.0239 0.0879 30 1 0.7088 1.1615 -3.4843 31 1 3.9173 1.6728 1.8705 32 1 3.6308 1.0028 0.2436 33 1 5.5225 -0.5163 0.4714 34 1 6.0831 1.1204 0.8935 35 1 4.7658 -3.3440 2.3683 36 1 4.6375 -2.1712 1.0380 37 1 7.1021 -1.7537 1.2170 38 1 6.7251 -3.4466 0.8128 39 1 7.5910 -0.9667 3.8972 40 1 7.5296 -2.1498 5.2268 41 1 5.3716 -0.9909 5.0614 42 1 5.1725 -2.6939 4.5868 43 1 3.5077 -0.1668 3.9093 44 1 3.0050 -1.7736 3.3244 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001361720239.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:27 Heat of formation + Delta-G solvation = -169.685530 kcal Electronic energy + Delta-G solvation = -28731.424717 eV Core-core repulsion = 24775.387023 eV Total energy + Delta-G solvation = -3956.037694 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.83497 -39.93221 -38.10305 -37.09589 -36.39278 -35.82300 -35.41688 -32.98597 -32.55194 -31.24319 -28.99938 -27.34035 -26.09880 -24.96572 -24.31246 -23.39179 -21.02639 -19.95251 -19.78517 -18.44804 -18.36485 -18.00431 -17.41214 -17.29889 -16.83960 -16.77727 -16.29204 -16.14851 -16.03173 -15.68264 -14.94638 -14.79058 -14.51943 -14.42241 -14.14736 -13.89566 -13.77562 -13.56027 -13.22305 -13.12422 -13.10502 -13.03656 -12.88773 -12.84601 -12.77863 -12.50362 -12.42124 -12.23735 -12.19186 -12.07152 -11.71288 -11.59591 -11.23717 -11.10287 -10.86509 -10.62655 -10.29338 -9.45599 -8.18179 -6.33358 -0.92044 1.40239 1.43590 1.49518 1.72405 1.84488 2.06394 2.42015 2.56820 2.71194 2.93862 3.10933 3.40523 3.49142 3.54982 3.66022 3.90280 3.99849 4.03007 4.14700 4.27336 4.30352 4.40618 4.50149 4.53950 4.63990 4.71941 4.75321 4.77168 4.85708 4.88916 4.93841 4.96273 5.07188 5.09294 5.15302 5.41951 5.56831 5.70843 5.84775 6.04411 6.13255 6.47669 6.69535 7.31540 7.41528 8.86399 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.016632 B = 0.004100 C = 0.003708 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.144546 B = 6827.233777 C = 7549.725122 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.029 3.971 3 H 0.047 0.953 4 C -0.522 4.522 5 H 0.044 0.956 6 C 0.031 3.969 7 N -0.904 5.904 8 Si 0.951 3.049 9 H -0.283 1.283 10 H -0.279 1.279 11 H -0.265 1.265 12 C 0.530 3.470 13 O -0.593 6.593 14 N -0.617 5.617 15 C 0.071 3.929 16 C 0.042 3.958 17 O -0.359 6.359 18 C 0.094 3.906 19 C -0.141 4.141 20 C -0.594 4.594 21 S 2.421 3.579 22 O -0.982 6.982 23 O -0.976 6.976 24 C -0.571 4.571 25 C -0.095 4.095 26 C 0.086 3.914 27 H 0.024 0.976 28 H 0.074 0.926 29 H 0.021 0.979 30 H 0.267 0.733 31 H 0.089 0.911 32 H 0.094 0.906 33 H 0.056 0.944 34 H 0.139 0.861 35 H 0.092 0.908 36 H 0.071 0.929 37 H 0.151 0.849 38 H 0.139 0.861 39 H 0.161 0.839 40 H 0.164 0.836 41 H 0.124 0.876 42 H 0.107 0.893 43 H 0.097 0.903 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.381 1.425 12.331 18.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.008 3.992 3 H 0.065 0.935 4 C -0.561 4.561 5 H 0.062 0.938 6 C -0.170 4.170 7 N -0.542 5.542 8 Si 0.777 3.223 9 H -0.209 1.209 10 H -0.204 1.204 11 H -0.189 1.189 12 C 0.321 3.679 13 O -0.474 6.474 14 N -0.351 5.351 15 C -0.052 4.052 16 C -0.035 4.035 17 O -0.278 6.278 18 C 0.054 3.946 19 C -0.179 4.179 20 C -0.723 4.723 21 S 2.608 3.392 22 O -0.979 6.979 23 O -0.973 6.973 24 C -0.704 4.704 25 C -0.133 4.133 26 C -0.037 4.037 27 H 0.043 0.957 28 H 0.092 0.908 29 H 0.040 0.960 30 H 0.076 0.924 31 H 0.107 0.893 32 H 0.112 0.888 33 H 0.074 0.926 34 H 0.157 0.843 35 H 0.111 0.889 36 H 0.090 0.910 37 H 0.169 0.831 38 H 0.157 0.843 39 H 0.179 0.821 40 H 0.182 0.818 41 H 0.142 0.858 42 H 0.125 0.875 43 H 0.115 0.885 44 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 13.667 0.357 12.637 18.618 hybrid contribution -0.888 0.039 -1.612 1.841 sum 12.778 0.396 11.026 16.882 Atomic orbital electron populations 1.21531 0.96933 0.98670 1.00736 1.18853 0.94162 0.96411 0.89796 0.93506 1.20799 1.32432 1.12467 0.90371 0.93789 1.25512 0.94816 0.95422 1.01208 1.69943 1.36294 1.23335 1.24618 0.85717 0.79228 0.78397 0.78986 1.20857 1.20421 1.18930 1.21605 0.79191 0.82747 0.84308 1.90512 1.59254 1.30188 1.67425 1.48183 1.24334 1.38596 1.23967 1.22590 0.91497 0.89988 1.01101 1.23181 0.94611 1.00750 0.84963 1.87937 1.58619 1.46832 1.34422 1.22016 0.91502 0.86312 0.94812 1.21871 0.93988 1.00361 1.01721 1.30092 1.07262 1.14115 1.20845 1.07714 0.74562 0.77681 0.79292 1.93535 1.31078 1.88086 1.85192 1.93538 1.79373 1.44132 1.80282 1.29898 1.04782 1.18596 1.17121 1.21391 0.91424 1.05606 0.94916 1.22319 0.94363 1.00399 0.86576 0.95685 0.90764 0.96015 0.92360 0.89256 0.88773 0.92620 0.84296 0.88917 0.91026 0.83052 0.84319 0.82133 0.81793 0.85772 0.87509 0.88451 0.89563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.78 71.98 0.63 -5.32 16 2 C 0.03 1.38 1.84 -12.29 -0.02 1.35 16 3 H 0.05 2.21 6.28 -2.39 -0.01 2.20 16 4 C -0.52 -26.95 8.40 25.60 0.21 -26.74 16 5 H 0.04 2.32 7.74 -2.91 -0.02 2.30 16 6 C 0.03 1.60 5.29 84.65 0.45 2.05 16 7 N -0.90 -47.66 11.30 21.45 0.24 -47.42 16 8 Si 0.95 40.92 29.54 68.60 2.03 42.95 16 9 H -0.28 -12.45 7.11 99.48 0.71 -11.75 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 12 C 0.53 23.09 6.64 87.66 0.58 23.67 16 13 O -0.59 -29.31 15.63 -3.04 -0.05 -29.35 16 14 N -0.62 -20.26 2.34 -817.18 -1.91 -22.18 16 15 C 0.07 1.92 6.31 86.35 0.54 2.46 16 16 C 0.04 0.88 6.12 72.08 0.44 1.32 16 17 O -0.36 -6.73 8.23 -148.98 -1.23 -7.95 16 18 C 0.09 1.90 0.67 -10.86 -0.01 1.89 16 19 C -0.14 -3.33 4.00 30.50 0.12 -3.21 16 20 C -0.59 -11.35 5.95 71.99 0.43 -10.93 16 21 S 2.42 46.41 5.30 -56.49 -0.30 46.11 16 22 O -0.98 -25.27 18.10 -127.38 -2.31 -27.58 16 23 O -0.98 -25.49 17.95 -127.38 -2.29 -27.77 16 24 C -0.57 -6.54 6.17 71.99 0.44 -6.10 16 25 C -0.09 -1.26 4.84 30.50 0.15 -1.12 16 26 C 0.09 2.20 5.30 86.40 0.46 2.66 16 27 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.07 3.90 5.95 -2.39 -0.01 3.88 16 29 H 0.02 1.09 7.68 -2.39 -0.02 1.07 16 30 H 0.27 13.42 8.31 -92.71 -0.77 12.65 16 31 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 32 H 0.09 3.08 5.68 -2.38 -0.01 3.06 16 33 H 0.06 1.32 5.80 -2.39 -0.01 1.31 16 34 H 0.14 2.07 8.14 -2.39 -0.02 2.05 16 35 H 0.09 2.20 8.01 -2.39 -0.02 2.18 16 36 H 0.07 2.16 6.38 -2.39 -0.02 2.14 16 37 H 0.15 2.44 6.45 -2.39 -0.02 2.42 16 38 H 0.14 2.51 8.14 -2.39 -0.02 2.49 16 39 H 0.16 1.46 7.35 -2.39 -0.02 1.44 16 40 H 0.16 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.12 1.12 8.04 -2.39 -0.02 1.10 16 42 H 0.11 1.34 7.99 -2.39 -0.02 1.32 16 43 H 0.10 2.03 8.06 -2.39 -0.02 2.01 16 44 H 0.09 2.51 7.06 -2.39 -0.02 2.49 16 Total: -1.00 -73.45 347.51 -0.36 -73.81 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 1.01 Total: 17.39 kcal Atomic # 6 Polarization: -22.44 SS G_CDS: 4.43 Total: -18.01 kcal Atomic # 7 Polarization: -67.93 SS G_CDS: -1.67 Total: -69.60 kcal Atomic # 8 Polarization: -86.79 SS G_CDS: -5.87 Total: -92.66 kcal Atomic # 14 Polarization: 40.92 SS G_CDS: 2.03 Total: 42.95 kcal Atomic # 16 Polarization: 46.41 SS G_CDS: -0.30 Total: 46.11 kcal Total: -73.45 -0.36 -73.81 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001361720239.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.871 kcal (2) G-P(sol) polarization free energy of solvation -73.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -169.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.815 kcal (6) G-S(sol) free energy of system = (1) + (5) -169.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds