Wall clock time and date at job start Tue Mar 31 2020 17:50:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46983 * 2 1 4 4 N 1.46499 * 109.47403 * 240.00261 * 2 1 3 5 5 C 1.34776 * 119.99966 * 84.99548 * 4 2 1 6 6 O 1.21281 * 120.00297 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99838 * 180.02562 * 5 4 2 8 8 H 1.09003 * 109.46950 * 299.99800 * 7 5 4 9 9 C 1.50694 * 109.47104 * 60.00081 * 7 5 4 10 10 H 1.08006 * 120.00052 * 32.73336 * 9 7 5 11 11 C 1.37882 * 120.00185 * 212.73786 * 9 7 5 12 12 N 1.31512 * 120.00346 * 188.39409 * 11 9 7 13 13 Si 1.86800 * 119.99833 * 8.39344 * 11 9 7 14 14 H 1.48497 * 109.47061 * 275.31442 * 13 11 9 15 15 H 1.48499 * 109.47077 * 35.31409 * 13 11 9 16 16 H 1.48497 * 109.47188 * 155.31123 * 13 11 9 17 17 C 1.50700 * 109.47081 * 179.97438 * 7 5 4 18 18 C 1.38227 * 120.00003 * 292.61722 * 17 7 5 19 19 C 1.38240 * 120.00033 * 179.78821 * 18 17 7 20 20 C 1.38236 * 119.99492 * 0.43905 * 19 18 17 21 21 C 1.38229 * 120.00158 * 359.81551 * 20 19 18 22 22 C 1.38232 * 119.99734 * 112.88643 * 17 7 5 23 23 C 1.52999 * 109.47325 * 119.99473 * 2 1 3 24 24 H 1.09004 * 109.46973 * 65.24904 * 23 2 1 25 25 O 1.42890 * 109.47471 * 305.24839 * 23 2 1 26 26 C 1.53004 * 109.47285 * 185.24303 * 23 2 1 27 27 F 1.39903 * 109.47048 * 54.72111 * 26 23 2 28 28 F 1.39899 * 109.47214 * 174.72363 * 26 23 2 29 29 F 1.39898 * 109.46869 * 294.72527 * 26 23 2 30 30 H 1.09002 * 109.46631 * 185.36849 * 1 2 3 31 31 H 1.08994 * 109.47356 * 305.36595 * 1 2 3 32 32 H 1.08998 * 109.47078 * 65.37534 * 1 2 3 33 33 H 0.96995 * 119.99705 * 264.99553 * 4 2 1 34 34 H 0.96994 * 120.00033 * 179.97438 * 12 11 9 35 35 H 1.07999 * 120.00305 * 359.97438 * 18 17 7 36 36 H 1.08004 * 120.00078 * 180.27277 * 19 18 17 37 37 H 1.08000 * 119.99506 * 179.83095 * 20 19 18 38 38 H 1.08008 * 120.00046 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.00600 * 359.97438 * 22 17 7 40 40 H 0.96701 * 113.99963 * 299.99704 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8590 1.1587 -2.4115 7 6 2.6489 -0.7287 -3.5878 8 1 3.6481 -1.1211 -3.3986 9 6 1.7187 -1.8649 -3.9263 10 1 0.6622 -1.7778 -3.7194 11 6 2.2162 -3.0157 -4.5000 12 7 1.3914 -3.9377 -4.9463 13 14 4.0619 -3.2653 -4.6433 14 1 4.5574 -2.5993 -5.8746 15 1 4.7345 -2.6769 -3.4573 16 1 4.3611 -4.7182 -4.7118 17 6 2.6991 0.2395 -4.7415 18 6 1.5269 0.7514 -5.2656 19 6 1.5731 1.6429 -6.3211 20 6 2.7912 2.0155 -6.8582 21 6 3.9630 1.4996 -6.3375 22 6 3.9170 0.6114 -5.2792 23 6 2.0400 -0.7211 1.2493 24 1 1.7555 -1.7724 1.2036 25 8 1.4659 -0.1224 2.4127 26 6 3.5644 -0.6080 1.3169 27 9 3.9352 0.7396 1.2541 28 9 4.0203 -1.1616 2.5181 29 9 4.1314 -1.2983 0.2403 30 1 -0.3633 -1.0232 0.0962 31 1 -0.3634 0.5948 0.8380 32 1 -0.3633 0.4282 -0.9342 33 1 2.2491 -1.6316 -1.1526 34 1 1.7415 -4.7471 -5.3502 35 1 0.5751 0.4572 -4.8487 36 1 0.6575 2.0463 -6.7278 37 1 2.8271 2.7099 -7.6846 38 1 4.9147 1.7910 -6.7569 39 1 4.8327 0.2085 -4.8722 40 1 1.6779 0.8152 2.5180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001363008731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:13 Heat of formation + Delta-G solvation = -220.460187 kcal Electronic energy + Delta-G solvation = -29802.974708 eV Core-core repulsion = 25167.434569 eV Total energy + Delta-G solvation = -4635.540140 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.20624 -47.73223 -47.66184 -39.66468 -38.47760 -37.56968 -34.66952 -33.69660 -31.57285 -30.52180 -30.12664 -28.85228 -27.64744 -24.15110 -23.56295 -22.07376 -21.79502 -20.82659 -19.54442 -18.75425 -18.62218 -18.38968 -17.16909 -16.98315 -16.41615 -15.93444 -15.45597 -14.66233 -14.63104 -14.53738 -14.38756 -14.21959 -14.09034 -14.01932 -13.91266 -13.81689 -13.72946 -13.45765 -13.02777 -12.82966 -12.67284 -12.48907 -12.23537 -12.09454 -11.92207 -11.79374 -11.30322 -11.12625 -11.05994 -10.61217 -10.45307 -10.28677 -9.95245 -9.59335 -9.03415 -8.76396 -8.67393 -8.13128 -7.82810 -6.34304 -4.38419 2.15452 2.22040 2.50338 3.14910 3.20281 3.24644 3.28264 3.45134 3.53658 3.63107 3.93554 4.19715 4.24416 4.49150 4.62602 4.81254 4.97593 5.25299 5.35009 5.55461 5.60005 5.68481 5.77197 5.89860 5.94131 6.09023 6.26717 6.31556 6.33379 6.44777 6.73310 6.82695 6.85666 6.92495 7.17177 7.24458 7.26181 7.59185 7.79776 8.05103 8.18778 8.64919 8.96734 9.24149 10.76531 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.004762 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.379712 B = 5878.227359 C = 6594.798583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.111 3.889 3 H 0.098 0.902 4 N -0.726 5.726 5 C 0.542 3.458 6 O -0.555 6.555 7 C 0.024 3.976 8 H 0.070 0.930 9 C -0.514 4.514 10 H 0.083 0.917 11 C 0.088 3.912 12 N -0.879 5.879 13 Si 0.862 3.138 14 H -0.267 1.267 15 H -0.262 1.262 16 H -0.284 1.284 17 C -0.028 4.028 18 C -0.071 4.071 19 C -0.130 4.130 20 C -0.142 4.142 21 C -0.129 4.129 22 C -0.135 4.135 23 C 0.067 3.933 24 H 0.147 0.853 25 O -0.522 6.522 26 C 0.418 3.582 27 F -0.182 7.182 28 F -0.180 7.180 29 F -0.169 7.169 30 H 0.062 0.938 31 H 0.066 0.934 32 H 0.072 0.928 33 H 0.408 0.592 34 H 0.269 0.731 35 H 0.117 0.883 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.109 0.891 39 H 0.107 0.893 40 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.629 6.452 10.153 12.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.005 3.995 3 H 0.116 0.884 4 N -0.381 5.381 5 C 0.332 3.668 6 O -0.433 6.433 7 C 0.002 3.998 8 H 0.088 0.912 9 C -0.551 4.551 10 H 0.101 0.899 11 C -0.117 4.117 12 N -0.514 5.514 13 Si 0.688 3.312 14 H -0.192 1.192 15 H -0.187 1.187 16 H -0.210 1.210 17 C -0.029 4.029 18 C -0.089 4.089 19 C -0.148 4.148 20 C -0.161 4.161 21 C -0.147 4.147 22 C -0.153 4.153 23 C 0.004 3.996 24 H 0.165 0.835 25 O -0.327 6.327 26 C 0.364 3.636 27 F -0.164 7.164 28 F -0.161 7.161 29 F -0.151 7.151 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.091 0.909 33 H 0.245 0.755 34 H 0.079 0.921 35 H 0.135 0.865 36 H 0.129 0.871 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.125 0.875 40 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 2.196 6.503 10.123 12.231 hybrid contribution 1.635 -0.290 -0.303 1.688 sum 3.831 6.213 9.821 12.236 Atomic orbital electron populations 1.22035 0.93013 1.02896 1.03028 1.21476 0.96588 0.97959 0.83509 0.88377 1.45929 1.68930 1.14654 1.08579 1.21173 0.75330 0.86203 0.84111 1.90602 1.51049 1.16570 1.85092 1.18489 0.99609 0.94194 0.87496 0.91230 1.20499 0.95098 0.96679 1.42870 0.89902 1.24960 0.97584 0.95637 0.93551 1.69869 1.34856 1.09049 1.37645 0.87030 0.86442 0.77812 0.79896 1.19160 1.18655 1.20987 1.20043 0.92435 0.93636 0.96766 1.20834 0.98406 0.94861 0.94815 1.21033 0.97141 0.99042 0.97558 1.20861 0.92918 1.01564 1.00717 1.20875 0.97556 0.98698 0.97559 1.20972 0.97205 0.99122 0.98038 1.23521 0.84836 1.02844 0.88364 0.83512 1.86712 1.74204 1.29896 1.41883 1.21638 0.93910 0.74078 0.74023 1.93185 1.93289 1.33882 1.96032 1.93201 1.91004 1.85403 1.46497 1.93241 1.87015 1.79287 1.55524 0.91855 0.91514 0.90940 0.75549 0.92074 0.86478 0.87141 0.87350 0.87291 0.87466 0.76406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.19 37.16 0.34 -1.57 16 2 C 0.11 1.46 2.23 -67.93 -0.15 1.31 16 3 H 0.10 1.38 6.95 -51.93 -0.36 1.01 16 4 N -0.73 -12.02 3.88 -53.80 -0.21 -12.23 16 5 C 0.54 11.07 7.01 -10.98 -0.08 11.00 16 6 O -0.56 -12.33 15.14 5.56 0.08 -12.25 16 7 C 0.02 0.52 1.97 -94.07 -0.19 0.34 16 8 H 0.07 1.53 4.84 -51.93 -0.25 1.28 16 9 C -0.51 -12.73 7.94 -34.44 -0.27 -13.00 16 10 H 0.08 2.25 8.06 -52.48 -0.42 1.82 16 11 C 0.09 2.27 5.47 -17.82 -0.10 2.18 16 12 N -0.88 -24.35 13.96 55.43 0.77 -23.57 16 13 Si 0.86 19.56 27.31 -169.99 -4.64 14.91 16 14 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 15 H -0.26 -5.57 6.41 56.52 0.36 -5.20 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 17 C -0.03 -0.61 4.28 -104.63 -0.45 -1.06 16 18 C -0.07 -1.53 8.38 -39.58 -0.33 -1.86 16 19 C -0.13 -2.43 10.05 -39.58 -0.40 -2.83 16 20 C -0.14 -2.49 10.05 -39.59 -0.40 -2.89 16 21 C -0.13 -2.32 10.05 -39.59 -0.40 -2.72 16 22 C -0.14 -2.75 9.67 -39.59 -0.38 -3.13 16 23 C 0.07 0.71 2.70 -26.73 -0.07 0.64 16 24 H 0.15 1.42 8.14 -51.93 -0.42 0.99 16 25 O -0.52 -4.83 12.42 -35.23 -0.44 -5.26 16 26 C 0.42 5.11 2.86 37.16 0.11 5.21 16 27 F -0.18 -2.32 16.29 2.25 0.04 -2.29 16 28 F -0.18 -2.21 17.18 2.25 0.04 -2.17 16 29 F -0.17 -2.41 15.43 2.25 0.03 -2.37 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.07 0.69 7.74 -51.93 -0.40 0.29 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 33 H 0.41 6.54 7.75 -40.82 -0.32 6.22 16 34 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.12 2.60 7.85 -52.49 -0.41 2.18 16 36 H 0.11 1.77 8.06 -52.48 -0.42 1.35 16 37 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 38 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 39 H 0.11 2.02 7.96 -52.49 -0.42 1.60 16 40 H 0.39 2.37 8.85 45.56 0.40 2.78 16 LS Contribution 350.96 15.07 5.29 5.29 Total: -1.00 -30.03 350.96 -5.69 -35.71 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -3.89 Total: 12.62 kcal Atomic # 6 Polarization: -5.62 SS G_CDS: -2.76 Total: -8.39 kcal Atomic # 7 Polarization: -36.37 SS G_CDS: 0.56 Total: -35.80 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: -0.35 Total: -17.51 kcal Atomic # 9 Polarization: -6.94 SS G_CDS: 0.11 Total: -6.83 kcal Atomic # 14 Polarization: 19.56 SS G_CDS: -4.64 Total: 14.91 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -30.03 -5.69 -35.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363008731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -184.746 kcal (2) G-P(sol) polarization free energy of solvation -30.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -214.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -220.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds