Wall clock time and date at job start Tue Mar 31 2020 17:50:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09006 * 109.46983 * 2 1 4 4 N 1.46499 * 109.47403 * 240.00261 * 2 1 3 5 5 C 1.34776 * 119.99966 * 84.99548 * 4 2 1 6 6 O 1.21281 * 120.00297 * 0.02562 * 5 4 2 7 7 C 1.50707 * 119.99838 * 180.02562 * 5 4 2 8 8 H 1.09003 * 109.46950 * 299.99800 * 7 5 4 9 9 C 1.50694 * 109.47104 * 60.00081 * 7 5 4 10 10 H 1.08006 * 120.00052 * 32.73336 * 9 7 5 11 11 C 1.37882 * 120.00185 * 212.73786 * 9 7 5 12 12 N 1.31512 * 120.00346 * 188.39409 * 11 9 7 13 13 Si 1.86800 * 119.99833 * 8.39344 * 11 9 7 14 14 H 1.48497 * 109.47061 * 275.31442 * 13 11 9 15 15 H 1.48499 * 109.47077 * 35.31409 * 13 11 9 16 16 H 1.48497 * 109.47188 * 155.31123 * 13 11 9 17 17 C 1.50700 * 109.47081 * 179.97438 * 7 5 4 18 18 C 1.38227 * 120.00003 * 292.61722 * 17 7 5 19 19 C 1.38240 * 120.00033 * 179.78821 * 18 17 7 20 20 C 1.38236 * 119.99492 * 0.43905 * 19 18 17 21 21 C 1.38229 * 120.00158 * 359.81551 * 20 19 18 22 22 C 1.38232 * 119.99734 * 112.88643 * 17 7 5 23 23 C 1.52999 * 109.47325 * 119.99473 * 2 1 3 24 24 H 1.09004 * 109.46973 * 65.24904 * 23 2 1 25 25 O 1.42890 * 109.47471 * 305.24839 * 23 2 1 26 26 C 1.53004 * 109.47285 * 185.24303 * 23 2 1 27 27 F 1.39903 * 109.47048 * 54.72111 * 26 23 2 28 28 F 1.39899 * 109.47214 * 174.72363 * 26 23 2 29 29 F 1.39898 * 109.46869 * 294.72527 * 26 23 2 30 30 H 1.09002 * 109.46631 * 185.36849 * 1 2 3 31 31 H 1.08994 * 109.47356 * 305.36595 * 1 2 3 32 32 H 1.08998 * 109.47078 * 65.37534 * 1 2 3 33 33 H 0.96995 * 119.99705 * 264.99553 * 4 2 1 34 34 H 0.96994 * 120.00033 * 179.97438 * 12 11 9 35 35 H 1.07999 * 120.00305 * 359.97438 * 18 17 7 36 36 H 1.08004 * 120.00078 * 180.27277 * 19 18 17 37 37 H 1.08000 * 119.99506 * 179.83095 * 20 19 18 38 38 H 1.08008 * 120.00046 * 180.02562 * 21 20 19 39 39 H 1.08002 * 120.00600 * 359.97438 * 22 17 7 40 40 H 0.96701 * 113.99963 * 299.99704 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0181 -2.3571 6 8 1.8590 1.1587 -2.4115 7 6 2.6489 -0.7287 -3.5878 8 1 3.6481 -1.1211 -3.3986 9 6 1.7187 -1.8649 -3.9263 10 1 0.6622 -1.7778 -3.7194 11 6 2.2162 -3.0157 -4.5000 12 7 1.3914 -3.9377 -4.9463 13 14 4.0619 -3.2653 -4.6433 14 1 4.5574 -2.5993 -5.8746 15 1 4.7345 -2.6769 -3.4573 16 1 4.3611 -4.7182 -4.7118 17 6 2.6991 0.2395 -4.7415 18 6 1.5269 0.7514 -5.2656 19 6 1.5731 1.6429 -6.3211 20 6 2.7912 2.0155 -6.8582 21 6 3.9630 1.4996 -6.3375 22 6 3.9170 0.6114 -5.2792 23 6 2.0400 -0.7211 1.2493 24 1 1.7555 -1.7724 1.2036 25 8 1.4659 -0.1224 2.4127 26 6 3.5644 -0.6080 1.3169 27 9 3.9352 0.7396 1.2541 28 9 4.0203 -1.1616 2.5181 29 9 4.1314 -1.2983 0.2403 30 1 -0.3633 -1.0232 0.0962 31 1 -0.3634 0.5948 0.8380 32 1 -0.3633 0.4282 -0.9342 33 1 2.2491 -1.6316 -1.1526 34 1 1.7415 -4.7471 -5.3502 35 1 0.5751 0.4572 -4.8487 36 1 0.6575 2.0463 -6.7278 37 1 2.8271 2.7099 -7.6846 38 1 4.9147 1.7910 -6.7569 39 1 4.8327 0.2085 -4.8722 40 1 1.6779 0.8152 2.5180 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363008731.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:12 Heat of formation + Delta-G solvation = -240.560221 kcal Electronic energy + Delta-G solvation = -29803.846311 eV Core-core repulsion = 25167.434569 eV Total energy + Delta-G solvation = -4636.411742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.21203 -48.73547 -48.68627 -41.15188 -39.76175 -38.77173 -35.90018 -35.52040 -33.37169 -31.76910 -31.61951 -29.84292 -29.28141 -25.69153 -24.89426 -23.41712 -23.17120 -22.15906 -21.06478 -19.72675 -19.62449 -19.40201 -19.09213 -18.29310 -17.84748 -17.28849 -16.68794 -16.29285 -15.96752 -15.68196 -15.56243 -15.50908 -15.29827 -15.15259 -15.10095 -14.87974 -14.82960 -14.80856 -14.49769 -14.31332 -14.17024 -13.90144 -13.62328 -13.48875 -13.16946 -12.95088 -12.93997 -12.77624 -12.27634 -12.02059 -11.98978 -11.64920 -11.53772 -11.40361 -10.87965 -10.57852 -10.07493 -9.63864 -9.37142 -8.34455 -6.41164 0.64723 0.71340 1.34430 1.37908 1.42809 1.54171 1.83297 2.14356 2.30312 2.56581 2.64842 2.87380 2.95951 3.16188 3.32834 3.50553 3.85233 4.08946 4.17383 4.21625 4.23071 4.33744 4.39427 4.43700 4.59171 4.75366 4.82668 4.89770 4.91468 5.19762 5.25026 5.32891 5.41015 5.54143 5.70411 5.74627 5.95399 6.20598 6.26075 6.30812 6.58728 6.61577 7.23849 7.39395 8.79787 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.012297 B = 0.004762 C = 0.004245 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2276.379712 B = 5878.227359 C = 6594.798583 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.110 3.890 3 H 0.092 0.908 4 N -0.717 5.717 5 C 0.541 3.459 6 O -0.577 6.577 7 C 0.024 3.976 8 H 0.073 0.927 9 C -0.499 4.499 10 H 0.044 0.956 11 C 0.041 3.959 12 N -0.926 5.926 13 Si 0.914 3.086 14 H -0.268 1.268 15 H -0.238 1.238 16 H -0.283 1.283 17 C -0.057 4.057 18 C -0.101 4.101 19 C -0.134 4.134 20 C -0.137 4.137 21 C -0.126 4.126 22 C -0.153 4.153 23 C 0.085 3.915 24 H 0.162 0.838 25 O -0.518 6.518 26 C 0.417 3.583 27 F -0.186 7.186 28 F -0.178 7.178 29 F -0.183 7.183 30 H 0.067 0.933 31 H 0.094 0.906 32 H 0.040 0.960 33 H 0.411 0.589 34 H 0.270 0.730 35 H 0.092 0.908 36 H 0.134 0.866 37 H 0.149 0.851 38 H 0.146 0.854 39 H 0.118 0.882 40 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.237 7.692 10.498 13.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.005 3.995 3 H 0.110 0.890 4 N -0.371 5.371 5 C 0.329 3.671 6 O -0.457 6.457 7 C 0.002 3.998 8 H 0.091 0.909 9 C -0.536 4.536 10 H 0.063 0.937 11 C -0.159 4.159 12 N -0.564 5.564 13 Si 0.738 3.262 14 H -0.193 1.193 15 H -0.162 1.162 16 H -0.209 1.209 17 C -0.058 4.058 18 C -0.119 4.119 19 C -0.151 4.151 20 C -0.154 4.154 21 C -0.143 4.143 22 C -0.172 4.172 23 C 0.022 3.978 24 H 0.179 0.821 25 O -0.325 6.325 26 C 0.362 3.638 27 F -0.168 7.168 28 F -0.159 7.159 29 F -0.164 7.164 30 H 0.086 0.914 31 H 0.113 0.887 32 H 0.060 0.940 33 H 0.248 0.752 34 H 0.079 0.921 35 H 0.110 0.890 36 H 0.152 0.848 37 H 0.167 0.833 38 H 0.164 0.836 39 H 0.136 0.864 40 H 0.254 0.746 Dipole moment (debyes) X Y Z Total from point charges 3.807 7.759 10.519 13.614 hybrid contribution 1.061 -0.551 -0.390 1.258 sum 4.868 7.207 10.128 13.350 Atomic orbital electron populations 1.21976 0.92415 1.03458 1.02528 1.21642 0.96984 0.97705 0.83216 0.88975 1.45858 1.67818 1.14702 1.08759 1.20878 0.75475 0.85956 0.84774 1.90576 1.52176 1.17394 1.85591 1.18433 0.98871 0.93624 0.88845 0.90943 1.20427 0.93775 0.97638 1.41799 0.93740 1.25622 1.01554 0.95368 0.93399 1.69992 1.36827 1.09892 1.39670 0.86191 0.81728 0.77726 0.80588 1.19275 1.16203 1.20904 1.20104 0.93568 0.94881 0.97199 1.20824 0.97409 0.96954 0.96720 1.21362 0.99207 0.98033 0.96542 1.21338 0.91902 1.01189 1.01008 1.21342 0.99527 0.97176 0.96300 1.21241 0.96789 1.00097 0.99033 1.23307 0.83668 1.03335 0.87445 0.82112 1.86716 1.73788 1.31329 1.40632 1.21864 0.94521 0.73729 0.73637 1.93179 1.93416 1.34148 1.96027 1.93203 1.91063 1.85370 1.46304 1.93212 1.87341 1.79598 1.56270 0.91400 0.88711 0.94040 0.75229 0.92105 0.89008 0.84775 0.83300 0.83592 0.86354 0.74636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.59 9.19 71.98 0.66 -2.93 16 2 C 0.11 2.81 2.23 44.99 0.10 2.91 16 3 H 0.09 2.52 6.95 -2.38 -0.02 2.51 16 4 N -0.72 -23.94 3.88 -442.52 -1.72 -25.66 16 5 C 0.54 22.57 7.01 87.66 0.61 23.19 16 6 O -0.58 -26.29 15.14 -3.03 -0.05 -26.33 16 7 C 0.02 1.07 1.97 -13.03 -0.03 1.04 16 8 H 0.07 3.16 4.84 -2.39 -0.01 3.15 16 9 C -0.50 -25.68 7.94 25.60 0.20 -25.48 16 10 H 0.04 2.57 8.06 -2.91 -0.02 2.55 16 11 C 0.04 2.19 5.47 84.66 0.46 2.65 16 12 N -0.93 -53.05 13.96 21.45 0.30 -52.75 16 13 Si 0.91 40.21 27.31 68.60 1.87 42.08 16 14 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 15 H -0.24 -9.49 6.41 99.48 0.64 -8.85 16 16 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 17 C -0.06 -2.52 4.28 -19.87 -0.09 -2.60 16 18 C -0.10 -4.45 8.38 22.27 0.19 -4.26 16 19 C -0.13 -4.86 10.05 22.27 0.22 -4.63 16 20 C -0.14 -4.33 10.05 22.27 0.22 -4.10 16 21 C -0.13 -4.13 10.05 22.27 0.22 -3.91 16 22 C -0.15 -6.01 9.67 22.27 0.22 -5.79 16 23 C 0.09 1.66 2.70 30.60 0.08 1.75 16 24 H 0.16 2.75 8.14 -2.38 -0.02 2.74 16 25 O -0.52 -8.20 12.42 -148.98 -1.85 -10.05 16 26 C 0.42 9.54 2.86 71.98 0.21 9.75 16 27 F -0.19 -4.49 16.29 44.97 0.73 -3.76 16 28 F -0.18 -4.05 17.18 44.97 0.77 -3.27 16 29 F -0.18 -4.99 15.43 44.97 0.69 -4.30 16 30 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 31 H 0.09 1.79 7.74 -2.39 -0.02 1.77 16 32 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.41 13.20 7.75 -92.71 -0.72 12.48 16 34 H 0.27 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.09 4.37 7.85 -2.91 -0.02 4.34 16 36 H 0.13 4.09 8.06 -2.91 -0.02 4.07 16 37 H 0.15 3.50 8.06 -2.91 -0.02 3.48 16 38 H 0.15 3.68 8.06 -2.91 -0.02 3.65 16 39 H 0.12 4.24 7.96 -2.91 -0.02 4.21 16 40 H 0.40 3.84 8.85 -74.06 -0.66 3.18 16 Total: -1.00 -66.97 350.96 3.71 -63.26 By element: Atomic # 1 Polarization: 33.54 SS G_CDS: -0.34 Total: 33.21 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 3.29 Total: -12.42 kcal Atomic # 7 Polarization: -77.00 SS G_CDS: -1.42 Total: -78.41 kcal Atomic # 8 Polarization: -34.49 SS G_CDS: -1.90 Total: -36.39 kcal Atomic # 9 Polarization: -13.53 SS G_CDS: 2.20 Total: -11.33 kcal Atomic # 14 Polarization: 40.21 SS G_CDS: 1.87 Total: 42.08 kcal Total: -66.97 3.71 -63.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363008731.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -177.305 kcal (2) G-P(sol) polarization free energy of solvation -66.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -244.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.713 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -240.560 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds