Wall clock time and date at job start Tue Mar 31 2020 17:50:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09006 * 109.46768 * 2 1 4 4 N 1.46500 * 109.47138 * 240.00424 * 2 1 3 5 5 C 1.34777 * 120.00351 * 84.99892 * 4 2 1 6 6 O 1.21292 * 119.99724 * 359.97438 * 5 4 2 7 7 C 1.50699 * 120.00452 * 180.02562 * 5 4 2 8 8 H 1.09001 * 109.46961 * 60.00134 * 7 5 4 9 9 C 1.50696 * 109.47062 * 299.99973 * 7 5 4 10 10 H 1.08001 * 120.00133 * 333.01388 * 9 7 5 11 11 C 1.37882 * 120.00055 * 153.00702 * 9 7 5 12 12 N 1.31511 * 120.00183 * 186.83561 * 11 9 7 13 13 Si 1.86797 * 119.99685 * 6.83920 * 11 9 7 14 14 H 1.48502 * 109.47105 * 84.76299 * 13 11 9 15 15 H 1.48506 * 109.47091 * 204.75993 * 13 11 9 16 16 H 1.48496 * 109.47560 * 324.75994 * 13 11 9 17 17 C 1.50698 * 109.47215 * 179.97438 * 7 5 4 18 18 C 1.38236 * 119.99928 * 67.11834 * 17 7 5 19 19 C 1.38239 * 119.99963 * 179.80846 * 18 17 7 20 20 C 1.38231 * 119.99979 * 0.39627 * 19 18 17 21 21 C 1.38245 * 119.99969 * 359.85806 * 20 19 18 22 22 C 1.38233 * 119.99918 * 359.95421 * 21 20 19 23 23 C 1.52994 * 109.47183 * 120.00435 * 2 1 3 24 24 H 1.08998 * 109.47044 * 65.12380 * 23 2 1 25 25 O 1.42900 * 109.47175 * 305.12592 * 23 2 1 26 26 C 1.52999 * 109.47004 * 185.12782 * 23 2 1 27 27 F 1.39894 * 109.47249 * 54.80406 * 26 23 2 28 28 F 1.39902 * 109.47012 * 174.80085 * 26 23 2 29 29 F 1.39903 * 109.47141 * 294.80107 * 26 23 2 30 30 H 1.08996 * 109.47307 * 176.97840 * 1 2 3 31 31 H 1.08998 * 109.46992 * 296.98247 * 1 2 3 32 32 H 1.09007 * 109.46876 * 56.98008 * 1 2 3 33 33 H 0.96998 * 119.99924 * 264.72827 * 4 2 1 34 34 H 0.96994 * 120.00345 * 180.02562 * 12 11 9 35 35 H 1.08002 * 119.99977 * 359.97438 * 18 17 7 36 36 H 1.07991 * 119.99837 * 180.23610 * 19 18 17 37 37 H 1.08004 * 120.00350 * 179.83577 * 20 19 18 38 38 H 1.07995 * 119.99964 * 179.97438 * 21 20 19 39 39 H 1.08001 * 119.99928 * 179.97438 * 22 21 20 40 40 H 0.96706 * 113.99900 * 300.00073 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1471 -0.0182 -2.3572 6 8 1.8582 1.1586 -2.4117 7 6 2.6489 -0.7286 -3.5878 8 1 1.9759 -1.5503 -3.8327 9 6 4.0302 -1.2713 -3.3264 10 1 4.6702 -0.7922 -2.6002 11 6 4.4770 -2.3796 -4.0142 12 7 5.6255 -2.9340 -3.6930 13 14 3.4511 -3.0936 -5.4024 14 1 3.7456 -2.3636 -6.6616 15 1 3.7827 -4.5309 -5.5743 16 1 2.0094 -2.9540 -5.0749 17 6 2.6991 0.2397 -4.7415 18 6 3.5992 1.2887 -4.7247 19 6 3.6480 2.1746 -5.7848 20 6 2.7910 2.0163 -6.8578 21 6 1.8872 0.9703 -6.8722 22 6 1.8411 0.0822 -5.8139 23 6 2.0400 -0.7213 1.2491 24 1 1.7536 -1.7720 1.2043 25 8 1.4680 -0.1209 2.4129 26 6 3.5646 -0.6106 1.3152 27 9 3.9375 0.7363 1.2533 28 9 4.0209 -1.1660 2.5155 29 9 4.1295 -1.3009 0.2374 30 1 -0.3634 -1.0262 -0.0542 31 1 -0.3633 0.4663 0.9158 32 1 -0.3633 0.5600 -0.8617 33 1 2.2528 -1.6307 -1.1517 34 1 5.9400 -3.7135 -4.1771 35 1 4.2662 1.4145 -3.8847 36 1 4.3538 2.9919 -5.7735 37 1 2.8273 2.7100 -7.6848 38 1 1.2174 0.8469 -7.7103 39 1 1.1348 -0.7347 -5.8249 40 1 1.6818 0.8165 2.5173 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001363008736.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:19 Heat of formation + Delta-G solvation = -239.230207 kcal Electronic energy + Delta-G solvation = -29973.352849 eV Core-core repulsion = 25336.998781 eV Total energy + Delta-G solvation = -4636.354069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -51.15586 -48.70159 -48.61734 -41.14520 -39.76994 -38.76477 -35.88672 -35.50551 -33.35975 -31.75379 -31.62731 -29.81235 -29.23414 -25.71554 -24.82439 -23.42255 -23.15977 -22.14835 -21.05858 -19.69649 -19.55990 -19.35921 -19.04322 -18.29525 -17.76635 -17.30104 -16.67953 -16.30818 -16.02190 -15.65418 -15.49831 -15.44566 -15.27468 -15.14618 -15.05924 -14.87234 -14.78250 -14.74370 -14.46275 -14.30937 -14.11711 -13.86989 -13.69697 -13.42362 -13.16697 -12.95823 -12.89830 -12.69587 -12.25906 -12.05103 -11.95902 -11.63072 -11.54562 -11.40660 -10.84814 -10.55441 -10.05912 -9.64330 -9.37126 -8.31133 -6.38251 0.63775 0.69846 1.33131 1.41771 1.44748 1.59849 1.82444 2.18735 2.32112 2.63777 2.68188 2.90120 3.00051 3.14953 3.32120 3.54046 3.87950 4.10369 4.17736 4.21585 4.25090 4.33332 4.39562 4.44985 4.63592 4.80044 4.81704 4.91146 4.94054 5.20455 5.26669 5.32191 5.41170 5.55306 5.69565 5.74052 5.95922 6.22423 6.23998 6.30346 6.60591 6.65500 7.26411 7.40844 8.82907 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.013300 B = 0.004865 C = 0.004194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2104.712763 B = 5753.705145 C = 6674.620885 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.108 3.892 3 H 0.083 0.917 4 N -0.717 5.717 5 C 0.543 3.457 6 O -0.578 6.578 7 C 0.022 3.978 8 H 0.080 0.920 9 C -0.495 4.495 10 H 0.040 0.960 11 C 0.039 3.961 12 N -0.928 5.928 13 Si 0.918 3.082 14 H -0.274 1.274 15 H -0.288 1.288 16 H -0.231 1.231 17 C -0.057 4.057 18 C -0.103 4.103 19 C -0.134 4.134 20 C -0.137 4.137 21 C -0.126 4.126 22 C -0.152 4.152 23 C 0.089 3.911 24 H 0.166 0.834 25 O -0.518 6.518 26 C 0.408 3.592 27 F -0.192 7.192 28 F -0.182 7.182 29 F -0.179 7.179 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.049 0.951 33 H 0.412 0.588 34 H 0.268 0.732 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.149 0.851 38 H 0.148 0.852 39 H 0.123 0.877 40 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.091 4.105 5.835 13.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.003 3.997 3 H 0.101 0.899 4 N -0.371 5.371 5 C 0.331 3.669 6 O -0.458 6.458 7 C 0.001 3.999 8 H 0.097 0.903 9 C -0.533 4.533 10 H 0.059 0.941 11 C -0.162 4.162 12 N -0.566 5.566 13 Si 0.742 3.258 14 H -0.199 1.199 15 H -0.214 1.214 16 H -0.154 1.154 17 C -0.058 4.058 18 C -0.121 4.121 19 C -0.152 4.152 20 C -0.154 4.154 21 C -0.144 4.144 22 C -0.171 4.171 23 C 0.026 3.974 24 H 0.183 0.817 25 O -0.324 6.324 26 C 0.354 3.646 27 F -0.173 7.173 28 F -0.164 7.164 29 F -0.160 7.160 30 H 0.093 0.907 31 H 0.113 0.887 32 H 0.068 0.932 33 H 0.249 0.751 34 H 0.077 0.923 35 H 0.107 0.893 36 H 0.151 0.849 37 H 0.167 0.833 38 H 0.166 0.834 39 H 0.141 0.859 40 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges -11.372 4.210 5.908 13.489 hybrid contribution 1.273 -0.360 -0.524 1.422 sum -10.100 3.850 5.384 12.075 Atomic orbital electron populations 1.21999 0.91272 1.03672 1.03321 1.21652 0.97557 0.97382 0.83107 0.89899 1.45869 1.67553 1.14946 1.08709 1.20785 0.74383 0.86390 0.85315 1.90581 1.51951 1.17229 1.86052 1.18493 0.97871 0.94488 0.89081 0.90273 1.20415 0.97682 1.11777 1.23399 0.94146 1.25617 0.95869 0.96331 0.98364 1.70004 1.22372 1.22526 1.41742 0.86191 0.81587 0.77294 0.80715 1.19902 1.21372 1.15421 1.20124 0.94522 0.94930 0.96222 1.20841 0.97962 0.95196 0.98144 1.21352 1.00178 0.99435 0.94260 1.21346 0.96287 0.99032 0.98777 1.21373 0.99599 0.94948 0.98454 1.21266 0.99676 1.00931 0.95183 1.23313 0.82950 1.03465 0.87672 0.81698 1.86695 1.73601 1.31311 1.40799 1.22128 0.95177 0.73631 0.73693 1.93155 1.93506 1.34627 1.96059 1.93184 1.91225 1.85333 1.46612 1.93323 1.87444 1.79434 1.55830 0.90657 0.88670 0.93183 0.75125 0.92270 0.89271 0.84932 0.83322 0.83442 0.85941 0.74726 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.01 9.34 71.98 0.67 -2.34 16 2 C 0.11 2.77 2.23 44.99 0.10 2.87 16 3 H 0.08 2.43 6.96 -2.38 -0.02 2.41 16 4 N -0.72 -23.72 3.89 -442.52 -1.72 -25.44 16 5 C 0.54 22.46 7.01 87.66 0.61 23.07 16 6 O -0.58 -26.18 15.13 -3.07 -0.05 -26.22 16 7 C 0.02 0.98 1.88 -13.03 -0.02 0.96 16 8 H 0.08 3.32 5.42 -2.39 -0.01 3.31 16 9 C -0.50 -25.80 7.98 25.60 0.20 -25.60 16 10 H 0.04 2.41 8.06 -2.91 -0.02 2.39 16 11 C 0.04 2.07 5.47 84.66 0.46 2.53 16 12 N -0.93 -54.11 13.96 21.45 0.30 -53.81 16 13 Si 0.92 40.81 26.14 68.60 1.79 42.60 16 14 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 15 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 16 H -0.23 -8.99 6.11 99.48 0.61 -8.38 16 17 C -0.06 -2.50 3.59 -19.87 -0.07 -2.57 16 18 C -0.10 -4.56 8.37 22.27 0.19 -4.37 16 19 C -0.13 -4.89 10.05 22.27 0.22 -4.67 16 20 C -0.14 -4.29 10.05 22.27 0.22 -4.07 16 21 C -0.13 -4.05 10.05 22.27 0.22 -3.83 16 22 C -0.15 -5.79 8.71 22.27 0.19 -5.60 16 23 C 0.09 1.87 2.70 30.59 0.08 1.95 16 24 H 0.17 2.86 8.14 -2.39 -0.02 2.84 16 25 O -0.52 -8.66 12.27 -148.98 -1.83 -10.49 16 26 C 0.41 11.53 2.86 71.98 0.21 11.73 16 27 F -0.19 -5.80 16.29 44.97 0.73 -5.07 16 28 F -0.18 -5.08 17.18 44.97 0.77 -4.30 16 29 F -0.18 -6.53 15.41 44.97 0.69 -5.83 16 30 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.09 1.53 7.45 -2.39 -0.02 1.51 16 32 H 0.05 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.41 13.16 7.72 -92.71 -0.72 12.45 16 34 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 35 H 0.09 4.31 7.86 -2.91 -0.02 4.29 16 36 H 0.13 4.09 8.06 -2.92 -0.02 4.06 16 37 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 38 H 0.15 3.58 8.06 -2.91 -0.02 3.56 16 39 H 0.12 4.19 7.96 -2.91 -0.02 4.17 16 40 H 0.40 4.46 8.84 -74.05 -0.65 3.81 16 Total: -1.00 -69.40 348.02 3.63 -65.77 By element: Atomic # 1 Polarization: 33.09 SS G_CDS: -0.36 Total: 32.72 kcal Atomic # 6 Polarization: -13.23 SS G_CDS: 3.30 Total: -9.93 kcal Atomic # 7 Polarization: -77.82 SS G_CDS: -1.42 Total: -79.24 kcal Atomic # 8 Polarization: -34.84 SS G_CDS: -1.87 Total: -36.71 kcal Atomic # 9 Polarization: -17.40 SS G_CDS: 2.20 Total: -15.21 kcal Atomic # 14 Polarization: 40.81 SS G_CDS: 1.79 Total: 42.60 kcal Total: -69.40 3.63 -65.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001363008736.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -173.460 kcal (2) G-P(sol) polarization free energy of solvation -69.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -242.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -239.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds