Wall clock time and date at job start Tue Mar 31 2020 17:50:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47563 * 2 1 4 4 C 1.50700 * 109.46638 * 239.99808 * 2 1 3 5 5 H 1.08000 * 119.99914 * 239.99945 * 4 2 1 6 6 C 1.37874 * 120.00021 * 60.00529 * 4 2 1 7 7 N 1.31515 * 120.00170 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99991 * 180.02562 * 6 4 2 9 9 H 1.48493 * 109.47603 * 59.99632 * 8 6 4 10 10 H 1.48500 * 109.47247 * 180.02562 * 8 6 4 11 11 H 1.48502 * 109.47107 * 299.99217 * 8 6 4 12 12 C 1.50698 * 109.47066 * 120.00003 * 2 1 3 13 13 O 1.21282 * 119.99885 * 119.99751 * 12 2 1 14 14 N 1.34770 * 120.00274 * 299.99791 * 12 2 1 15 15 C 1.46503 * 120.00056 * 180.02562 * 14 12 2 16 16 H 1.09000 * 109.53913 * 325.15726 * 15 14 12 17 17 C 1.53166 * 109.60643 * 85.37206 * 15 14 12 18 18 C 1.53089 * 109.13511 * 176.88134 * 17 15 14 19 19 O 1.42849 * 109.45307 * 302.39882 * 18 17 15 20 20 C 1.43245 * 114.00440 * 61.41482 * 19 18 17 21 21 C 1.53215 * 109.08998 * 179.43802 * 20 19 18 22 22 C 1.55040 * 108.70741 * 209.33898 * 21 20 19 23 23 S 1.83829 * 101.14591 * 42.13440 * 22 21 20 24 24 O 1.42098 * 109.61325 * 210.94542 * 23 22 21 25 25 O 1.42098 * 109.77782 * 77.04039 * 23 22 21 26 26 C 1.53849 * 108.75884 * 57.01437 * 20 19 18 27 27 C 1.53141 * 109.53409 * 204.99688 * 15 14 12 28 28 H 1.08998 * 109.47348 * 59.99517 * 1 2 3 29 29 H 1.08998 * 109.47563 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.46774 * 300.00363 * 1 2 3 31 31 H 0.96999 * 119.99961 * 180.02562 * 7 6 4 32 32 H 0.97001 * 119.99988 * 359.97438 * 14 12 2 33 33 H 1.09000 * 109.52616 * 296.78169 * 17 15 14 34 34 H 1.09002 * 109.52811 * 56.91606 * 17 15 14 35 35 H 1.09001 * 109.47450 * 182.40265 * 18 17 15 36 36 H 1.09001 * 109.47411 * 62.39827 * 18 17 15 37 37 H 1.09003 * 109.64637 * 329.19592 * 21 20 19 38 38 H 1.09002 * 109.64409 * 89.48564 * 21 20 19 39 39 H 1.09003 * 111.08506 * 284.16880 * 22 21 20 40 40 H 1.08996 * 111.09080 * 160.10022 * 22 21 20 41 41 H 1.08997 * 110.24944 * 242.17963 * 26 20 19 42 42 H 1.08998 * 110.25181 * 4.10377 * 26 20 19 43 43 H 1.09002 * 109.53167 * 62.93157 * 27 15 14 44 44 H 1.08993 * 109.53725 * 302.70267 * 27 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7105 -1.2305 5 1 2.6531 -1.5886 -1.1314 6 6 1.6991 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3211 -1.1205 -4.0079 9 1 1.8255 -2.5203 -4.0078 10 1 1.8268 -0.4200 -5.2205 11 1 3.8061 -1.1211 -4.0083 12 6 2.0323 -0.7104 1.2304 13 8 2.7295 -1.6965 1.1191 14 7 1.7068 -0.2500 2.4545 15 6 2.1956 -0.9403 3.6507 16 1 2.2357 -2.0131 3.4617 17 6 3.5959 -0.4293 4.0028 18 6 4.0641 -1.1000 5.2969 19 8 3.1271 -0.8273 6.3400 20 6 1.8102 -1.3308 6.0867 21 6 0.9061 -0.9899 7.2758 22 6 -0.1935 -2.0767 7.3920 23 16 0.7828 -3.6041 7.0866 24 8 -0.0393 -4.5780 6.4581 25 8 1.5236 -3.9421 8.2511 26 6 1.8983 -2.8478 5.8460 27 6 1.2518 -0.6620 4.8241 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 0.7081 1.1609 -3.4844 32 1 1.1494 0.5389 2.5436 33 1 4.2864 -0.6733 3.1955 34 1 3.5652 0.6513 4.1418 35 1 5.0424 -0.7085 5.5757 36 1 4.1339 -2.1769 5.1434 37 1 1.4974 -0.9675 8.1912 38 1 0.4433 -0.0159 7.1169 39 1 -0.9601 -1.9422 6.6288 40 1 -0.6329 -2.0851 8.3894 41 1 1.5613 -3.0900 4.8382 42 1 2.9209 -3.1946 5.9949 43 1 0.2650 -1.0685 4.6025 44 1 1.1766 0.4135 4.9842 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412018927.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:39 Heat of formation + Delta-G solvation = -154.045885 kcal Electronic energy + Delta-G solvation = -27632.805660 eV Core-core repulsion = 23677.446152 eV Total energy + Delta-G solvation = -3955.359508 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.72395 -38.71313 -37.38011 -36.35330 -35.35105 -35.00740 -33.77632 -31.62625 -30.56700 -30.11661 -28.66070 -25.27257 -25.17173 -24.25078 -22.74680 -21.34239 -20.15877 -19.38159 -19.07577 -17.60412 -16.83216 -16.63996 -16.25791 -16.15758 -16.06361 -15.62093 -15.44016 -14.92798 -14.66120 -14.38774 -14.06942 -13.84603 -13.48774 -13.27549 -12.91251 -12.88743 -12.63797 -12.52014 -12.42718 -12.34138 -12.15486 -11.84949 -11.72005 -11.48692 -11.19243 -11.05422 -11.02752 -10.81044 -10.73282 -10.66877 -10.47519 -10.28982 -10.02623 -9.93899 -9.03256 -8.67484 -8.56455 -8.36454 -6.06914 -4.10332 -0.33624 2.09723 3.03849 3.26399 3.33632 3.36333 3.41156 3.59473 3.64265 3.71519 3.89067 4.09656 4.20506 4.41668 4.43272 4.50613 4.67663 4.76413 4.84829 5.01195 5.02847 5.10189 5.21739 5.26545 5.32126 5.33357 5.49221 5.51451 5.62255 5.79395 5.91776 6.10164 6.28289 6.56078 6.76651 6.80408 6.86898 6.98331 7.42170 7.71090 7.93861 8.09142 8.38035 8.98281 9.15530 9.55529 11.00644 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020899 B = 0.002895 C = 0.002810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1339.474929 B = 9671.172770 C = 9963.193470 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.030 3.970 3 H 0.052 0.948 4 C -0.503 4.503 5 H 0.073 0.927 6 C 0.059 3.941 7 N -0.897 5.897 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.521 3.479 13 O -0.545 6.545 14 N -0.742 5.742 15 C 0.141 3.859 16 H 0.088 0.912 17 C -0.167 4.167 18 C 0.059 3.941 19 O -0.363 6.363 20 C 0.139 3.861 21 C -0.112 4.112 22 C -0.577 4.577 23 S 2.387 3.613 24 O -0.933 6.933 25 O -0.929 6.929 26 C -0.631 4.631 27 C -0.153 4.153 28 H 0.093 0.907 29 H 0.031 0.969 30 H 0.011 0.989 31 H 0.261 0.739 32 H 0.396 0.604 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.102 0.898 38 H 0.108 0.892 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.150 0.850 42 H 0.150 0.850 43 H 0.085 0.915 44 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.572 -0.199 21.695 21.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.009 3.991 3 H 0.070 0.930 4 C -0.541 4.541 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.536 5.536 8 Si 0.729 3.271 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 C 0.311 3.689 13 O -0.421 6.421 14 N -0.396 5.396 15 C 0.035 3.965 16 H 0.106 0.894 17 C -0.206 4.206 18 C -0.018 4.018 19 O -0.282 6.282 20 C 0.098 3.902 21 C -0.150 4.150 22 C -0.707 4.707 23 S 2.570 3.430 24 O -0.930 6.930 25 O -0.926 6.926 26 C -0.760 4.760 27 C -0.191 4.191 28 H 0.112 0.888 29 H 0.050 0.950 30 H 0.030 0.970 31 H 0.071 0.929 32 H 0.230 0.770 33 H 0.102 0.898 34 H 0.093 0.907 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.121 0.879 38 H 0.126 0.874 39 H 0.160 0.840 40 H 0.161 0.839 41 H 0.168 0.832 42 H 0.168 0.832 43 H 0.104 0.896 44 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -1.141 -1.663 21.976 22.069 hybrid contribution 0.101 0.704 -1.514 1.673 sum -1.040 -0.958 20.462 20.511 Atomic orbital electron populations 1.21744 0.96541 0.99818 1.00926 1.18868 0.94144 0.96803 0.89326 0.93045 1.21097 1.31127 1.12851 0.89020 0.90861 1.24946 0.95078 0.95045 0.99127 1.69855 1.37005 1.23086 1.23691 0.86508 0.79275 0.79744 0.81618 1.20171 1.21360 1.20201 1.22024 0.78273 0.84161 0.84470 1.90527 1.37919 1.26893 1.86721 1.46345 1.55419 1.32599 1.05224 1.20826 0.92276 0.98564 0.84797 0.89445 1.22620 0.98262 1.01574 0.98136 1.22700 0.92270 0.99883 0.86920 1.88036 1.18116 1.78613 1.43432 1.21535 0.85328 0.88306 0.95074 1.21986 0.93847 1.00596 0.98620 1.30550 1.09974 1.17908 1.12275 1.09203 0.78352 0.78166 0.77302 1.93638 1.66454 1.56298 1.76642 1.93638 1.70859 1.82170 1.45958 1.31274 1.18260 1.07477 1.18948 1.22696 1.00004 1.02653 0.93748 0.88837 0.94991 0.96960 0.92877 0.76975 0.89792 0.90750 0.88098 0.92351 0.87922 0.87397 0.84004 0.83945 0.83166 0.83216 0.89635 0.89415 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.92 8.87 37.16 0.33 -2.59 16 2 C 0.03 0.71 2.64 -92.93 -0.25 0.47 16 3 H 0.05 1.28 8.14 -51.93 -0.42 0.86 16 4 C -0.50 -13.98 8.37 -34.44 -0.29 -14.27 16 5 H 0.07 2.15 6.75 -52.49 -0.35 1.80 16 6 C 0.06 1.61 5.30 -17.82 -0.09 1.51 16 7 N -0.90 -24.79 11.32 55.43 0.63 -24.17 16 8 Si 0.90 21.59 29.54 -169.99 -5.02 16.57 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 C 0.52 11.16 7.12 -10.99 -0.08 11.08 16 13 O -0.54 -13.45 15.12 5.56 0.08 -13.36 16 14 N -0.74 -11.59 4.98 -53.65 -0.27 -11.85 16 15 C 0.14 1.81 2.25 -67.77 -0.15 1.65 16 16 H 0.09 1.26 5.90 -51.93 -0.31 0.95 16 17 C -0.17 -2.01 5.72 -26.60 -0.15 -2.16 16 18 C 0.06 0.58 6.48 37.20 0.24 0.82 16 19 O -0.36 -3.52 10.15 -35.23 -0.36 -3.88 16 20 C 0.14 1.14 1.00 -89.86 -0.09 1.04 16 21 C -0.11 -0.64 5.53 -25.54 -0.14 -0.79 16 22 C -0.58 -2.82 7.46 38.24 0.29 -2.53 16 23 S 2.39 19.96 6.04 -107.50 -0.65 19.32 16 24 O -0.93 -11.38 18.16 -57.69 -1.05 -12.43 16 25 O -0.93 -10.72 18.16 -57.69 -1.05 -11.77 16 26 C -0.63 -5.17 5.47 37.60 0.21 -4.96 16 27 C -0.15 -1.36 4.08 -26.45 -0.11 -1.47 16 28 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 29 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 31 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 32 H 0.40 5.28 8.02 -40.82 -0.33 4.96 16 33 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 34 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 35 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.54 6.18 -51.93 -0.32 0.22 16 37 H 0.10 0.57 8.07 -51.93 -0.42 0.15 16 38 H 0.11 0.47 7.76 -51.93 -0.40 0.07 16 39 H 0.14 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 41 H 0.15 1.25 6.21 -51.93 -0.32 0.93 16 42 H 0.15 1.13 6.30 -51.93 -0.33 0.81 16 43 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.09 0.69 8.05 -51.93 -0.42 0.28 16 LS Contribution 355.41 15.07 5.36 5.36 Total: -1.00 -36.50 355.41 -9.04 -45.54 By element: Atomic # 1 Polarization: 9.30 SS G_CDS: -6.42 Total: 2.87 kcal Atomic # 6 Polarization: -11.91 SS G_CDS: -0.29 Total: -12.20 kcal Atomic # 7 Polarization: -36.38 SS G_CDS: 0.36 Total: -36.02 kcal Atomic # 8 Polarization: -39.07 SS G_CDS: -2.37 Total: -41.44 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Atomic # 16 Polarization: 19.96 SS G_CDS: -0.65 Total: 19.32 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.50 -9.04 -45.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412018927.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -108.505 kcal (2) G-P(sol) polarization free energy of solvation -36.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.009 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.036 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds