Wall clock time and date at job start Tue Mar 31 2020 17:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08998 * 109.47412 * 2 1 4 4 C 1.50700 * 109.47098 * 239.99488 * 2 1 3 5 5 H 1.08007 * 119.99736 * 239.99839 * 4 2 1 6 6 C 1.37874 * 120.00223 * 60.00441 * 4 2 1 7 7 N 1.31516 * 119.99697 * 359.97438 * 6 4 2 8 8 Si 1.86795 * 120.00187 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.47261 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47217 * 119.99991 * 8 6 4 11 11 H 1.48501 * 109.47184 * 239.99850 * 8 6 4 12 12 C 1.50706 * 109.47206 * 119.99743 * 2 1 3 13 13 O 1.21285 * 120.00235 * 119.99611 * 12 2 1 14 14 N 1.34782 * 119.99923 * 300.00191 * 12 2 1 15 15 C 1.46495 * 120.00208 * 179.97438 * 14 12 2 16 16 H 1.09007 * 109.54541 * 34.81355 * 15 14 12 17 17 C 1.53201 * 109.62303 * 274.58408 * 15 14 12 18 18 C 1.53088 * 109.20583 * 182.91783 * 17 15 14 19 19 O 1.42937 * 109.41529 * 57.81122 * 18 17 15 20 20 C 1.42749 * 114.07639 * 299.21228 * 19 18 17 21 21 C 1.52841 * 110.14570 * 182.08753 * 20 19 18 22 22 C 1.53657 * 112.23231 * 89.54695 * 21 20 19 23 23 S 1.83249 * 105.34581 * 2.25142 * 22 21 20 24 24 O 1.42101 * 109.60988 * 133.33533 * 23 22 21 25 25 O 1.42092 * 109.61289 * 267.28915 * 23 22 21 26 26 C 1.54988 * 108.91655 * 301.35856 * 20 19 18 27 27 C 1.52958 * 109.96497 * 60.60616 * 20 19 18 28 28 H 1.08996 * 109.47329 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47037 * 300.00046 * 1 2 3 30 30 H 1.08997 * 109.47129 * 60.00493 * 1 2 3 31 31 H 0.96995 * 119.99940 * 180.02562 * 7 6 4 32 32 H 0.97007 * 119.99346 * 359.97438 * 14 12 2 33 33 H 1.09007 * 109.52883 * 62.99182 * 17 15 14 34 34 H 1.08993 * 109.51383 * 302.83546 * 17 15 14 35 35 H 1.09002 * 109.48393 * 297.82143 * 18 17 15 36 36 H 1.08999 * 109.47963 * 177.79451 * 18 17 15 37 37 H 1.08997 * 108.93572 * 210.27166 * 21 20 19 38 38 H 1.08995 * 108.93672 * 328.95176 * 21 20 19 39 39 H 1.08998 * 110.26931 * 121.22369 * 22 21 20 40 40 H 1.09001 * 110.26725 * 243.19348 * 22 21 20 41 41 H 1.09002 * 111.08069 * 39.63458 * 26 20 19 42 42 H 1.09000 * 111.07865 * 163.68180 * 26 20 19 43 43 H 1.08993 * 109.52482 * 62.78576 * 27 20 19 44 44 H 1.09001 * 109.53015 * 182.92435 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.6533 -1.5886 -1.1312 6 6 1.6993 -0.2396 -2.4827 7 7 0.9429 0.8295 -2.6034 8 14 2.3225 -1.1199 -4.0078 9 1 3.1484 -2.2859 -3.6036 10 1 1.1678 -1.5869 -4.8164 11 1 3.1474 -0.1862 -4.8160 12 6 2.0323 -0.7104 1.2305 13 8 2.7296 -1.6965 1.1193 14 7 1.7067 -0.2499 2.4547 15 6 2.1945 -0.9407 3.6509 16 1 3.1924 -1.3366 3.4619 17 6 1.2454 -2.0902 4.0041 18 6 1.7234 -2.7591 5.2955 19 8 1.7780 -1.7871 6.3421 20 6 2.6760 -0.7070 6.0875 21 6 2.7028 0.2478 7.2806 22 6 3.7691 -0.1443 8.3152 23 16 4.6197 -1.6041 7.6056 24 8 6.0263 -1.4394 7.7213 25 8 3.9979 -2.7928 8.0741 26 6 4.1007 -1.2782 5.8722 27 6 2.2470 0.0423 4.8249 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 0.7083 1.1606 -3.4844 32 1 1.1493 0.5391 2.5435 33 1 1.2414 -2.8211 3.1954 34 1 0.2381 -1.6996 4.1477 35 1 2.7159 -3.1821 5.1401 36 1 1.0293 -3.5527 5.5723 37 1 2.9112 1.2558 6.9223 38 1 1.7251 0.2393 7.7624 39 1 4.4763 0.6730 8.4568 40 1 3.2980 -0.4038 9.2632 41 1 4.0697 -2.2006 5.2922 42 1 4.7510 -0.5419 5.4000 43 1 1.2605 0.4796 4.9784 44 1 2.9660 0.8324 4.6081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001412018934.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:43 Heat of formation + Delta-G solvation = -152.654682 kcal Electronic energy + Delta-G solvation = -27619.267380 eV Core-core repulsion = 23663.968199 eV Total energy + Delta-G solvation = -3955.299181 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 2.46 seconds Orbital eigenvalues (eV) -40.72454 -38.72663 -37.27869 -36.27774 -35.32532 -34.94908 -33.77655 -31.65973 -30.68504 -30.12881 -28.64881 -25.28909 -25.14427 -24.17348 -22.76197 -21.36090 -20.04819 -19.35579 -19.06509 -17.62464 -17.00095 -16.43836 -16.26705 -16.22316 -15.89719 -15.47807 -15.24230 -15.08990 -14.51949 -14.44810 -14.26792 -13.78583 -13.49047 -13.37193 -12.93346 -12.90620 -12.57201 -12.46862 -12.36950 -12.27332 -11.99926 -11.87658 -11.64619 -11.50405 -11.14910 -11.06553 -11.02371 -10.75953 -10.71702 -10.61090 -10.48760 -10.28905 -10.01624 -9.93146 -9.01042 -8.65875 -8.57182 -8.36830 -6.07460 -4.10651 -0.26562 2.15224 3.12328 3.27482 3.29301 3.37138 3.44746 3.61880 3.63286 3.65789 3.95189 4.14030 4.17993 4.39245 4.43887 4.65565 4.68126 4.73847 4.89730 5.05416 5.07195 5.16788 5.21821 5.26219 5.30906 5.36275 5.48695 5.56997 5.63460 5.81764 5.93818 6.12728 6.29582 6.56195 6.76953 6.81462 6.87009 6.99588 7.42108 7.70892 7.94045 8.09265 8.38300 8.98882 9.16248 9.55381 11.00181 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.025351 B = 0.002733 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1104.236850 B =10241.751939 C =10520.903769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.029 3.971 3 H 0.052 0.948 4 C -0.501 4.501 5 H 0.074 0.926 6 C 0.058 3.942 7 N -0.897 5.897 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.284 1.284 12 C 0.521 3.479 13 O -0.545 6.545 14 N -0.742 5.742 15 C 0.143 3.857 16 H 0.088 0.912 17 C -0.169 4.169 18 C 0.059 3.941 19 O -0.361 6.361 20 C 0.124 3.876 21 C -0.098 4.098 22 C -0.585 4.585 23 S 2.384 3.616 24 O -0.941 6.941 25 O -0.920 6.920 26 C -0.622 4.622 27 C -0.138 4.138 28 H 0.030 0.970 29 H 0.011 0.989 30 H 0.093 0.907 31 H 0.260 0.740 32 H 0.396 0.604 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.057 0.943 36 H 0.105 0.895 37 H 0.101 0.899 38 H 0.102 0.898 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.147 0.853 42 H 0.151 0.849 43 H 0.085 0.915 44 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.969 1.758 22.037 22.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.008 3.992 3 H 0.069 0.931 4 C -0.539 4.539 5 H 0.093 0.907 6 C -0.143 4.143 7 N -0.536 5.536 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.210 1.210 12 C 0.311 3.689 13 O -0.421 6.421 14 N -0.395 5.395 15 C 0.037 3.963 16 H 0.106 0.894 17 C -0.208 4.208 18 C -0.017 4.017 19 O -0.280 6.280 20 C 0.082 3.918 21 C -0.137 4.137 22 C -0.714 4.714 23 S 2.567 3.433 24 O -0.938 6.938 25 O -0.917 6.917 26 C -0.751 4.751 27 C -0.177 4.177 28 H 0.050 0.950 29 H 0.030 0.970 30 H 0.112 0.888 31 H 0.070 0.930 32 H 0.230 0.770 33 H 0.103 0.897 34 H 0.094 0.906 35 H 0.075 0.925 36 H 0.123 0.877 37 H 0.119 0.881 38 H 0.120 0.880 39 H 0.156 0.844 40 H 0.156 0.844 41 H 0.165 0.835 42 H 0.169 0.831 43 H 0.103 0.897 44 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 1.882 0.389 22.387 22.469 hybrid contribution -0.398 0.626 -1.476 1.651 sum 1.484 1.015 20.911 20.988 Atomic orbital electron populations 1.21737 0.96528 0.99787 1.00918 1.18878 0.94138 0.96818 0.89370 0.93054 1.21185 1.30929 1.12808 0.88995 0.90745 1.24951 0.95104 0.95059 0.99151 1.69875 1.37140 1.23143 1.23470 0.86408 0.78642 0.79798 0.82479 1.19562 1.21036 1.21036 1.22021 0.78203 0.84248 0.84465 1.90529 1.37945 1.26856 1.86722 1.46339 1.55494 1.32485 1.05232 1.20820 0.98766 0.91986 0.84751 0.89413 1.22661 1.00529 0.99475 0.98106 1.22748 1.01590 0.90686 0.86689 1.88024 1.62398 1.34267 1.43280 1.21724 0.86286 0.88175 0.95658 1.21457 1.00506 0.99416 0.92275 1.30305 1.11206 1.20395 1.09522 1.09278 0.75837 0.78185 0.79990 1.93619 1.27979 1.86989 1.85185 1.93645 1.77832 1.42138 1.78061 1.31391 1.07002 1.12725 1.24012 1.22371 1.03683 0.98653 0.93036 0.95041 0.96963 0.88844 0.93000 0.77003 0.89705 0.90636 0.92484 0.87710 0.88062 0.87971 0.84370 0.84412 0.83495 0.83132 0.89658 0.89506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 40. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.91 8.87 37.16 0.33 -2.58 16 2 C 0.03 0.69 2.64 -92.92 -0.25 0.45 16 3 H 0.05 1.27 8.14 -51.93 -0.42 0.85 16 4 C -0.50 -13.90 8.37 -34.44 -0.29 -14.19 16 5 H 0.07 2.19 6.75 -52.48 -0.35 1.84 16 6 C 0.06 1.58 5.30 -17.82 -0.09 1.49 16 7 N -0.90 -24.74 11.32 55.43 0.63 -24.11 16 8 Si 0.90 21.52 29.54 -169.99 -5.02 16.50 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 12 C 0.52 11.14 7.12 -10.98 -0.08 11.06 16 13 O -0.54 -13.45 15.12 5.55 0.08 -13.37 16 14 N -0.74 -11.56 4.98 -53.59 -0.27 -11.83 16 15 C 0.14 1.83 2.27 -67.72 -0.15 1.68 16 16 H 0.09 1.27 6.53 -51.92 -0.34 0.93 16 17 C -0.17 -2.08 5.72 -26.58 -0.15 -2.23 16 18 C 0.06 0.63 6.53 37.20 0.24 0.87 16 19 O -0.36 -3.68 9.90 -35.23 -0.35 -4.03 16 20 C 0.12 1.02 0.79 -89.67 -0.07 0.95 16 21 C -0.10 -0.54 5.62 -26.47 -0.15 -0.69 16 22 C -0.58 -3.00 7.32 37.50 0.27 -2.73 16 23 S 2.38 20.83 5.95 -107.50 -0.64 20.19 16 24 O -0.94 -11.30 18.16 -57.67 -1.05 -12.34 16 25 O -0.92 -11.32 17.95 -57.84 -1.04 -12.36 16 26 C -0.62 -5.04 5.24 38.21 0.20 -4.84 16 27 C -0.14 -1.23 4.20 -26.64 -0.11 -1.34 16 28 H 0.03 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.01 0.21 7.56 -51.93 -0.39 -0.18 16 30 H 0.09 2.30 6.07 -51.93 -0.32 1.99 16 31 H 0.26 6.85 8.31 -40.82 -0.34 6.51 16 32 H 0.40 5.27 8.03 -40.82 -0.33 4.95 16 33 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 34 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.06 0.58 5.96 -51.93 -0.31 0.27 16 36 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 37 H 0.10 0.35 7.81 -51.93 -0.41 -0.05 16 38 H 0.10 0.53 8.07 -51.93 -0.42 0.11 16 39 H 0.14 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.14 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.15 1.26 5.35 -51.93 -0.28 0.99 16 42 H 0.15 0.93 8.09 -51.93 -0.42 0.51 16 43 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 44 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 356.03 15.07 5.37 5.37 Total: -1.00 -36.32 356.03 -9.08 -45.40 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: -6.50 Total: 2.69 kcal Atomic # 6 Polarization: -11.81 SS G_CDS: -0.30 Total: -12.10 kcal Atomic # 7 Polarization: -36.30 SS G_CDS: 0.36 Total: -35.94 kcal Atomic # 8 Polarization: -39.75 SS G_CDS: -2.35 Total: -42.10 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 20.83 SS G_CDS: -0.64 Total: 20.19 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.32 -9.08 -45.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412018934.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.258 kcal (2) G-P(sol) polarization free energy of solvation -36.315 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.397 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.46 seconds