Wall clock time and date at job start Tue Mar 31 2020 17:50:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47281 * 2 1 4 4 C 1.50706 * 109.47417 * 240.00068 * 2 1 3 5 5 H 1.07994 * 119.99877 * 240.00095 * 4 2 1 6 6 C 1.37875 * 119.99874 * 59.99876 * 4 2 1 7 7 N 1.31512 * 120.00061 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 119.99650 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.47268 * 89.99834 * 8 6 4 10 10 H 1.48504 * 109.46652 * 209.99886 * 8 6 4 11 11 H 1.48498 * 109.47243 * 329.99394 * 8 6 4 12 12 C 1.50704 * 109.47416 * 119.99827 * 2 1 3 13 13 O 1.21283 * 119.99993 * 120.00196 * 12 2 1 14 14 N 1.34778 * 119.99705 * 300.00365 * 12 2 1 15 15 C 1.46498 * 119.99836 * 179.97438 * 14 12 2 16 16 H 1.09007 * 109.54310 * 34.81779 * 15 14 12 17 17 C 1.53173 * 109.55076 * 274.53730 * 15 14 12 18 18 C 1.53078 * 109.22895 * 182.97240 * 17 15 14 19 19 O 1.42941 * 109.40859 * 57.79453 * 18 17 15 20 20 C 1.42759 * 114.07731 * 299.22319 * 19 18 17 21 21 C 1.53897 * 109.55398 * 300.06585 * 20 19 18 22 22 C 1.55066 * 106.69358 * 287.29721 * 21 20 19 23 23 S 1.83290 * 102.58187 * 317.74392 * 22 21 20 24 24 O 1.42102 * 109.35468 * 269.78733 * 23 22 21 25 25 O 1.42100 * 109.47324 * 136.62122 * 23 22 21 26 26 C 1.54032 * 109.45780 * 180.86437 * 20 19 18 27 27 C 1.52956 * 109.95191 * 60.61817 * 20 19 18 28 28 H 1.08999 * 109.47326 * 60.00217 * 1 2 3 29 29 H 1.09008 * 109.46611 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47362 * 299.99989 * 1 2 3 31 31 H 0.97004 * 119.99813 * 180.02562 * 7 6 4 32 32 H 0.97003 * 120.00040 * 359.97438 * 14 12 2 33 33 H 1.09007 * 109.50856 * 302.89383 * 17 15 14 34 34 H 1.08994 * 109.51458 * 63.04154 * 17 15 14 35 35 H 1.08994 * 109.48242 * 177.77826 * 18 17 15 36 36 H 1.09004 * 109.48002 * 297.82103 * 18 17 15 37 37 H 1.08997 * 109.95612 * 168.00164 * 21 20 19 38 38 H 1.08999 * 110.03377 * 46.63235 * 21 20 19 39 39 H 1.09007 * 110.78651 * 199.47448 * 22 21 20 40 40 H 1.08994 * 110.78928 * 76.01899 * 22 21 20 41 41 H 1.09002 * 110.32816 * 333.05837 * 26 20 19 42 42 H 1.09002 * 110.32298 * 210.94594 * 26 20 19 43 43 H 1.09005 * 109.52542 * 62.76802 * 27 20 19 44 44 H 1.09003 * 109.52563 * 182.97379 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1314 6 6 1.6993 -0.2393 -2.4827 7 7 0.9436 0.8302 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.3430 -2.1618 -4.4118 10 1 2.4867 -0.1413 -5.1122 11 1 3.6295 -1.7582 -3.7121 12 6 2.0324 -0.7104 1.2305 13 8 2.7297 -1.6964 1.1192 14 7 1.7067 -0.2499 2.4546 15 6 2.1946 -0.9407 3.6508 16 1 3.1926 -1.3365 3.4617 17 6 1.2440 -2.0890 4.0031 18 6 1.7194 -2.7586 5.2950 19 8 1.7742 -1.7865 6.3415 20 6 2.6741 -0.7077 6.0878 21 6 4.0996 -1.2581 5.9053 22 6 4.5926 -1.6923 7.3100 23 16 4.0139 -0.3199 8.3781 24 8 5.0231 0.6779 8.4510 25 8 3.4568 -0.8516 9.5724 26 6 2.6657 0.2602 7.2860 27 6 2.2471 0.0422 4.8249 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0278 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 0.7090 1.1614 -3.4845 32 1 1.1493 0.5390 2.5435 33 1 0.2369 -1.6970 4.1455 34 1 1.2402 -2.8196 3.1944 35 1 1.0237 -3.5510 5.5710 36 1 2.7115 -3.1829 5.1407 37 1 4.7503 -0.4805 5.5053 38 1 4.0855 -2.1159 5.2330 39 1 5.6798 -1.7677 7.3322 40 1 4.1323 -2.6345 7.6073 41 1 1.7091 0.2105 7.8062 42 1 2.8614 1.2789 6.9512 43 1 1.2608 0.4805 4.9774 44 1 2.9678 0.8307 4.6081 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001412018944.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:50 Heat of formation + Delta-G solvation = -184.894161 kcal Electronic energy + Delta-G solvation = -27469.483471 eV Core-core repulsion = 23512.786282 eV Total energy + Delta-G solvation = -3956.697189 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -41.62220 -40.22428 -38.09189 -37.08696 -36.35089 -35.72611 -35.57306 -33.12984 -31.96607 -31.64409 -29.01291 -27.19819 -25.99996 -24.78163 -24.31776 -22.84704 -21.10188 -20.40653 -19.82972 -18.51860 -18.22710 -17.86293 -17.38658 -17.21250 -16.78526 -16.77385 -16.35521 -16.04182 -15.92697 -15.62566 -15.12350 -14.74302 -14.59151 -14.37181 -14.27804 -14.07394 -13.70854 -13.46463 -13.21631 -13.16396 -13.09528 -12.97057 -12.91005 -12.69177 -12.58920 -12.38957 -12.24986 -12.19954 -12.08000 -12.01612 -11.85676 -11.65120 -11.09409 -11.01513 -10.74859 -10.54551 -10.20147 -9.93307 -8.15168 -6.25211 -0.91421 1.40171 1.41490 1.52569 1.55862 1.95400 2.31488 2.41601 2.50771 2.73765 3.09558 3.14860 3.30311 3.40182 3.50905 3.80720 3.91025 3.94916 4.00509 4.08946 4.29814 4.32662 4.33631 4.54294 4.57569 4.68286 4.73696 4.76082 4.78799 4.89235 4.93306 4.96273 5.01451 5.04638 5.09532 5.25328 5.50994 5.64944 5.76396 5.95369 6.07942 6.22921 6.75618 6.88090 7.40942 7.57566 8.90444 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.028511 B = 0.002568 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 981.856315 B =10900.730185 C =10973.466062 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.023 3.977 3 H 0.041 0.959 4 C -0.528 4.528 5 H 0.049 0.951 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.953 3.047 9 H -0.275 1.275 10 H -0.276 1.276 11 H -0.278 1.278 12 C 0.525 3.475 13 O -0.584 6.584 14 N -0.721 5.721 15 C 0.136 3.864 16 H 0.075 0.925 17 C -0.165 4.165 18 C 0.061 3.939 19 O -0.371 6.371 20 C 0.129 3.871 21 C -0.163 4.163 22 C -0.564 4.564 23 S 2.395 3.605 24 O -0.973 6.973 25 O -0.978 6.978 26 C -0.568 4.568 27 C -0.140 4.140 28 H 0.068 0.932 29 H 0.021 0.979 30 H 0.052 0.948 31 H 0.264 0.736 32 H 0.409 0.591 33 H 0.078 0.922 34 H 0.056 0.944 35 H 0.117 0.883 36 H 0.069 0.931 37 H 0.115 0.885 38 H 0.108 0.892 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.163 0.837 42 H 0.175 0.825 43 H 0.099 0.901 44 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.698 -1.433 21.088 21.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.002 3.998 3 H 0.059 0.941 4 C -0.566 4.566 5 H 0.067 0.933 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.779 3.221 9 H -0.201 1.201 10 H -0.201 1.201 11 H -0.203 1.203 12 C 0.314 3.686 13 O -0.463 6.463 14 N -0.374 5.374 15 C 0.032 3.968 16 H 0.093 0.907 17 C -0.204 4.204 18 C -0.015 4.015 19 O -0.290 6.290 20 C 0.088 3.912 21 C -0.201 4.201 22 C -0.696 4.696 23 S 2.583 3.417 24 O -0.970 6.970 25 O -0.975 6.975 26 C -0.699 4.699 27 C -0.178 4.178 28 H 0.087 0.913 29 H 0.040 0.960 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.246 0.754 33 H 0.097 0.903 34 H 0.075 0.925 35 H 0.135 0.865 36 H 0.087 0.913 37 H 0.134 0.866 38 H 0.127 0.873 39 H 0.176 0.824 40 H 0.169 0.831 41 H 0.181 0.819 42 H 0.192 0.808 43 H 0.117 0.883 44 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.337 -1.680 21.977 22.165 hybrid contribution -0.223 -0.393 -2.155 2.202 sum 2.114 -2.073 19.822 20.042 Atomic orbital electron populations 1.21549 0.95211 0.99295 1.01666 1.18805 0.95195 0.95974 0.89870 0.94146 1.21309 1.31451 1.12672 0.91168 0.93269 1.25577 0.95264 0.95724 1.01406 1.69946 1.37331 1.23577 1.24242 0.85637 0.78677 0.78539 0.79295 1.20105 1.20147 1.20270 1.21435 0.78014 0.83624 0.85554 1.90503 1.39849 1.28481 1.87480 1.46050 1.54358 1.32421 1.04525 1.21071 0.98123 0.93098 0.84539 0.90662 1.22577 1.00667 0.98611 0.98562 1.22752 1.02521 0.90733 0.85515 1.87979 1.63136 1.34803 1.43057 1.21585 0.89557 0.86764 0.93319 1.23093 0.95510 1.05107 0.96426 1.30456 1.12967 1.17405 1.08738 1.08671 0.77504 0.78142 0.77350 1.93584 1.57398 1.58491 1.87574 1.93562 1.79157 1.79782 1.44989 1.30526 1.19832 1.09277 1.10216 1.22460 1.05441 0.98284 0.91644 0.91329 0.95991 0.92900 0.92670 0.75427 0.90347 0.92512 0.86495 0.91280 0.86621 0.87348 0.82414 0.83089 0.81866 0.80760 0.88275 0.87850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.18 8.87 71.98 0.64 -4.54 16 2 C 0.02 1.09 2.64 -12.28 -0.03 1.06 16 3 H 0.04 2.01 8.14 -2.39 -0.02 1.99 16 4 C -0.53 -29.66 8.37 25.60 0.21 -29.45 16 5 H 0.05 2.96 6.75 -2.91 -0.02 2.94 16 6 C 0.02 1.06 5.30 84.65 0.45 1.51 16 7 N -0.91 -50.20 11.32 21.45 0.24 -49.95 16 8 Si 0.95 44.04 29.54 68.60 2.03 46.06 16 9 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 10 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 11 H -0.28 -12.95 7.11 99.48 0.71 -12.25 16 12 C 0.52 22.09 7.12 87.66 0.62 22.71 16 13 O -0.58 -28.76 15.12 -3.04 -0.05 -28.81 16 14 N -0.72 -21.04 4.98 -441.91 -2.20 -23.24 16 15 C 0.14 3.13 2.26 45.12 0.10 3.23 16 16 H 0.08 1.97 6.46 -2.38 -0.02 1.95 16 17 C -0.17 -3.60 5.71 30.68 0.18 -3.42 16 18 C 0.06 0.98 6.53 72.01 0.47 1.46 16 19 O -0.37 -5.76 10.09 -148.98 -1.50 -7.27 16 20 C 0.13 1.67 0.79 -10.16 -0.01 1.67 16 21 C -0.16 -1.87 4.52 31.60 0.14 -1.73 16 22 C -0.56 -5.48 7.20 72.69 0.52 -4.96 16 23 S 2.40 34.43 6.10 -56.49 -0.34 34.08 16 24 O -0.97 -20.61 18.15 -127.47 -2.31 -22.93 16 25 O -0.98 -21.94 18.15 -127.47 -2.31 -24.25 16 26 C -0.57 -5.60 6.44 72.33 0.47 -5.13 16 27 C -0.14 -2.04 4.23 30.65 0.13 -1.91 16 28 H 0.07 3.35 6.07 -2.39 -0.01 3.34 16 29 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.05 1.81 7.56 -2.39 -0.02 1.79 16 31 H 0.26 13.81 8.31 -92.71 -0.77 13.04 16 32 H 0.41 9.84 8.03 -92.71 -0.74 9.09 16 33 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 34 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 35 H 0.12 1.54 8.14 -2.39 -0.02 1.53 16 36 H 0.07 0.99 6.13 -2.39 -0.01 0.98 16 37 H 0.12 1.05 8.10 -2.39 -0.02 1.03 16 38 H 0.11 1.35 5.26 -2.39 -0.01 1.33 16 39 H 0.16 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.15 1.23 8.14 -2.39 -0.02 1.21 16 41 H 0.16 1.37 8.08 -2.39 -0.02 1.35 16 42 H 0.17 0.92 7.87 -2.39 -0.02 0.90 16 43 H 0.10 1.25 8.14 -2.38 -0.02 1.23 16 44 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 Total: -1.00 -79.02 356.64 -2.28 -81.30 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: 0.28 Total: 14.52 kcal Atomic # 6 Polarization: -23.41 SS G_CDS: 3.89 Total: -19.52 kcal Atomic # 7 Polarization: -71.24 SS G_CDS: -1.96 Total: -73.19 kcal Atomic # 8 Polarization: -77.08 SS G_CDS: -6.17 Total: -83.25 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 2.03 Total: 46.06 kcal Atomic # 16 Polarization: 34.43 SS G_CDS: -0.34 Total: 34.08 kcal Total: -79.02 -2.28 -81.30 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001412018944.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.594 kcal (2) G-P(sol) polarization free energy of solvation -79.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -182.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds