Wall clock time and date at job start Tue Mar 31 2020 16:49:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47145 * 2 1 4 4 C 1.50700 * 109.47077 * 119.99333 * 2 1 3 5 5 H 1.07998 * 119.99510 * 125.40865 * 4 2 1 6 6 C 1.37871 * 120.00327 * 305.41739 * 4 2 1 7 7 N 1.31522 * 120.00162 * 150.78971 * 6 4 2 8 8 Si 1.86800 * 119.99971 * 330.78698 * 6 4 2 9 9 H 1.48503 * 109.46972 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47279 * 60.00421 * 8 6 4 11 11 H 1.48506 * 109.47249 * 299.99843 * 8 6 4 12 12 C 1.52990 * 109.47326 * 240.00102 * 2 1 3 13 13 S 1.81396 * 109.47441 * 59.99628 * 12 2 1 14 14 O 1.42093 * 110.54392 * 291.62814 * 13 12 2 15 15 O 1.42109 * 110.54187 * 68.37967 * 13 12 2 16 16 N 1.65602 * 104.45140 * 180.02562 * 13 12 2 17 17 C 1.47128 * 125.61280 * 90.02723 * 16 13 12 18 18 C 1.54569 * 107.33053 * 180.95100 * 17 16 13 19 19 C 1.53754 * 102.78881 * 20.92265 * 18 17 16 20 20 C 1.53145 * 111.49318 * 86.03776 * 19 18 17 21 21 C 1.54908 * 101.67219 * 137.17522 * 20 19 18 22 22 O 1.45989 * 104.54219 * 334.12463 * 21 20 19 23 23 C 1.34539 * 109.94485 * 29.75417 * 22 21 20 24 24 O 1.20829 * 125.39782 * 159.67794 * 23 22 21 25 25 C 1.47699 * 125.60909 * 269.71592 * 16 13 12 26 26 H 1.09007 * 109.47720 * 292.48248 * 1 2 3 27 27 H 1.09000 * 109.47341 * 52.48223 * 1 2 3 28 28 H 1.08999 * 109.47413 * 172.48304 * 1 2 3 29 29 H 1.08994 * 109.47366 * 183.42498 * 3 2 1 30 30 H 1.09001 * 109.47019 * 303.42616 * 3 2 1 31 31 H 1.09009 * 109.47241 * 63.42055 * 3 2 1 32 32 H 0.97001 * 119.99740 * 354.96124 * 7 6 4 33 33 H 1.09008 * 109.47487 * 180.02562 * 12 2 1 34 34 H 1.09004 * 109.47188 * 299.99995 * 12 2 1 35 35 H 1.09001 * 109.87215 * 300.39070 * 17 16 13 36 36 H 1.09006 * 109.87045 * 61.51451 * 17 16 13 37 37 H 1.08996 * 110.74988 * 139.24926 * 18 17 16 38 38 H 1.09005 * 110.75007 * 262.60311 * 18 17 16 39 39 H 1.09002 * 110.99013 * 255.26463 * 20 19 18 40 40 H 1.08997 * 110.98687 * 19.07984 * 20 19 18 41 41 H 1.08997 * 110.42378 * 92.88821 * 21 20 19 42 42 H 1.08995 * 110.42245 * 215.36279 * 21 20 19 43 43 H 1.08991 * 110.39584 * 276.14306 * 25 16 13 44 44 H 1.09006 * 110.38374 * 38.52747 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.7232 -1.5347 1.1339 6 6 1.6097 -0.3078 2.4797 7 7 1.5397 -1.1789 3.4625 8 14 1.1367 1.4749 2.7762 9 1 0.7212 1.6479 4.1913 10 1 0.0111 1.8439 1.8806 11 1 2.3025 2.3501 2.4926 12 6 2.0400 -0.7212 -1.2492 13 16 1.4353 0.1338 -2.7303 14 8 0.0280 -0.0184 -2.8543 15 8 2.0480 1.4100 -2.8544 16 7 2.0530 -0.7409 -3.9935 17 6 1.3955 -1.8833 -4.6471 18 6 2.3497 -2.3941 -5.7507 19 6 3.7138 -1.8445 -5.3023 20 6 4.4007 -2.7884 -4.3110 21 6 5.8613 -2.7756 -4.8267 22 8 5.7465 -2.4486 -6.2449 23 6 4.6616 -1.6804 -6.4523 24 8 4.4795 -0.9715 -7.4137 25 6 3.3518 -0.4984 -4.6537 26 1 -0.3635 0.3930 0.9496 27 1 -0.3634 0.6258 -0.8151 28 1 -0.3634 -1.0188 -0.1344 29 1 3.1282 1.4432 -0.0614 30 1 1.6273 1.9738 -0.8577 31 1 1.7275 1.9384 0.9191 32 1 1.7145 -2.1176 3.2919 33 1 3.1300 -0.7216 -1.2490 34 1 1.6766 -1.7489 -1.2492 35 1 1.2150 -2.6735 -3.9183 36 1 0.4527 -1.5638 -5.0911 37 1 2.3619 -3.4837 -5.7767 38 1 2.0697 -1.9867 -6.7222 39 1 4.3420 -2.3977 -3.2951 40 1 3.9755 -3.7905 -4.3675 41 1 6.4417 -2.0137 -4.3065 42 1 6.3185 -3.7567 -4.6986 43 1 3.2531 0.2776 -5.4127 44 1 4.1052 -0.2174 -3.9177 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001424916802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:50 Heat of formation + Delta-G solvation = -133.484398 kcal Electronic energy + Delta-G solvation = -28352.176122 eV Core-core repulsion = 24397.708227 eV Total energy + Delta-G solvation = -3954.467895 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.81082 -38.31934 -37.80256 -36.82317 -36.71816 -35.57038 -32.93932 -32.08792 -30.35165 -29.02659 -27.44118 -26.41925 -25.07421 -24.60016 -22.95087 -22.60585 -20.32265 -19.76743 -18.78591 -17.77796 -17.33985 -17.12141 -16.87702 -16.23102 -16.16675 -15.66784 -15.28033 -14.80736 -14.65241 -14.16263 -13.88449 -13.73686 -13.50981 -13.37534 -13.26181 -12.87676 -12.78299 -12.47585 -12.25478 -12.20668 -12.10234 -11.76744 -11.66722 -11.57797 -11.52892 -11.24877 -11.16495 -11.05686 -10.93675 -10.63147 -10.44584 -10.25203 -10.01113 -10.00300 -9.19071 -9.09055 -8.94358 -8.23362 -6.64006 -4.21775 0.50312 1.63831 2.74198 2.89192 3.30768 3.36564 3.45274 3.57066 3.76930 3.83111 4.11016 4.23299 4.25749 4.38052 4.45675 4.64201 4.82214 4.88370 4.99198 5.02963 5.10573 5.23328 5.29282 5.31966 5.37918 5.39959 5.48754 5.53909 5.68293 5.84470 5.94056 6.15319 6.17408 6.25866 6.31498 6.38655 6.44883 6.67660 6.81387 7.08909 7.10262 7.27648 7.93432 8.21303 8.71689 9.40572 10.71337 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.003795 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.918858 B = 7375.963279 C = 7874.917242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.060 3.940 3 C -0.180 4.180 4 C -0.603 4.603 5 H 0.062 0.938 6 C 0.047 3.953 7 N -0.882 5.882 8 Si 1.037 2.963 9 H -0.295 1.295 10 H -0.273 1.273 11 H -0.282 1.282 12 C -0.570 4.570 13 S 2.600 3.400 14 O -0.954 6.954 15 O -0.956 6.956 16 N -1.019 6.019 17 C 0.122 3.878 18 C -0.104 4.104 19 C -0.145 4.145 20 C -0.145 4.145 21 C 0.052 3.948 22 O -0.347 6.347 23 C 0.502 3.498 24 O -0.443 6.443 25 C 0.148 3.852 26 H 0.067 0.933 27 H 0.037 0.963 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.044 0.956 31 H 0.053 0.947 32 H 0.272 0.728 33 H 0.120 0.880 34 H 0.123 0.877 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.088 0.912 39 H 0.105 0.895 40 H 0.098 0.902 41 H 0.090 0.910 42 H 0.114 0.886 43 H 0.083 0.917 44 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.506 -5.709 -16.023 17.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 C -0.237 4.237 4 C -0.641 4.641 5 H 0.080 0.920 6 C -0.162 4.162 7 N -0.513 5.513 8 Si 0.869 3.131 9 H -0.223 1.223 10 H -0.200 1.200 11 H -0.210 1.210 12 C -0.703 4.703 13 S 2.700 3.300 14 O -0.945 6.945 15 O -0.947 6.947 16 N -0.855 5.855 17 C -0.003 4.003 18 C -0.143 4.143 19 C -0.149 4.149 20 C -0.183 4.183 21 C -0.022 4.022 22 O -0.263 6.263 23 C 0.341 3.659 24 O -0.325 6.325 25 C 0.022 3.978 26 H 0.086 0.914 27 H 0.056 0.944 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.063 0.937 31 H 0.072 0.928 32 H 0.082 0.918 33 H 0.139 0.861 34 H 0.141 0.859 35 H 0.091 0.909 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.107 0.893 39 H 0.123 0.877 40 H 0.117 0.883 41 H 0.109 0.891 42 H 0.132 0.868 43 H 0.101 0.899 44 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 4.506 -3.584 -15.522 16.555 hybrid contribution 0.919 -1.676 -0.717 2.041 sum 5.426 -5.260 -16.238 17.911 Atomic orbital electron populations 1.22626 0.97051 1.01451 1.01684 1.18193 0.92416 0.91607 0.92094 1.22782 1.02110 0.98143 1.00686 1.21541 1.32786 1.19801 0.89974 0.92011 1.25670 0.93244 1.04717 0.92521 1.70871 1.40549 1.03956 1.35948 0.84385 0.77225 0.76539 0.74976 1.22267 1.20020 1.21016 1.30429 1.11398 1.12969 1.15542 1.05629 0.74639 0.74771 0.74946 1.93557 1.28902 1.86412 1.85579 1.93560 1.78192 1.37288 1.85623 1.59047 1.29301 1.47451 1.49693 1.21746 0.96076 0.87826 0.94661 1.22505 0.90475 1.01541 0.99741 1.22305 0.97695 0.98994 0.95886 1.22958 0.94152 1.00891 1.00254 1.24302 0.97768 1.03602 0.76553 1.87168 1.46314 1.63595 1.29255 1.22333 0.81210 0.76017 0.86342 1.90732 1.76355 1.32954 1.32472 1.21658 0.85136 0.93840 0.97201 0.91407 0.94436 0.92557 0.92013 0.93725 0.92846 0.91779 0.86141 0.85868 0.90949 0.90304 0.88943 0.89303 0.87655 0.88308 0.89129 0.86767 0.89869 0.89699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.79 7.38 37.15 0.27 -3.52 16 2 C 0.06 1.34 0.52 -155.67 -0.08 1.26 16 3 C -0.18 -3.94 7.33 37.16 0.27 -3.66 16 4 C -0.60 -15.57 8.42 -34.44 -0.29 -15.86 16 5 H 0.06 1.67 7.99 -52.49 -0.42 1.25 16 6 C 0.05 1.28 5.05 -17.82 -0.09 1.19 16 7 N -0.88 -25.46 13.70 55.43 0.76 -24.70 16 8 Si 1.04 24.72 23.47 -169.99 -3.99 20.73 16 9 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 10 H -0.27 -6.08 5.79 56.52 0.33 -5.75 16 11 H -0.28 -6.38 6.72 56.52 0.38 -6.00 16 12 C -0.57 -9.91 5.11 37.15 0.19 -9.72 16 13 S 2.60 43.76 4.68 -107.50 -0.50 43.26 16 14 O -0.95 -18.27 15.38 -57.54 -0.88 -19.16 16 15 O -0.96 -18.28 15.29 -57.54 -0.88 -19.16 16 16 N -1.02 -12.80 3.63 -111.67 -0.41 -13.21 16 17 C 0.12 1.22 6.84 -2.87 -0.02 1.20 16 18 C -0.10 -0.83 5.94 -25.51 -0.15 -0.98 16 19 C -0.15 -1.28 0.76 -155.18 -0.12 -1.40 16 20 C -0.15 -0.89 6.33 -25.65 -0.16 -1.05 16 21 C 0.05 0.30 7.93 38.16 0.30 0.60 16 22 O -0.35 -3.33 11.08 -39.71 -0.44 -3.77 16 23 C 0.50 5.45 7.35 35.63 0.26 5.72 16 24 O -0.44 -6.27 17.87 -18.36 -0.33 -6.60 16 25 C 0.15 1.62 5.76 -3.00 -0.02 1.61 16 26 H 0.07 1.56 4.47 -51.92 -0.23 1.33 16 27 H 0.04 0.78 6.02 -51.93 -0.31 0.47 16 28 H 0.06 1.19 8.13 -51.93 -0.42 0.77 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.04 0.92 5.72 -51.93 -0.30 0.62 16 31 H 0.05 1.20 2.28 -51.92 -0.12 1.08 16 32 H 0.27 7.72 8.73 -40.82 -0.36 7.36 16 33 H 0.12 1.84 8.14 -51.92 -0.42 1.42 16 34 H 0.12 1.95 8.14 -51.92 -0.42 1.52 16 35 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.09 0.51 7.66 -51.93 -0.40 0.11 16 38 H 0.09 0.75 8.05 -51.93 -0.42 0.33 16 39 H 0.10 0.64 7.74 -51.93 -0.40 0.24 16 40 H 0.10 0.45 7.56 -51.93 -0.39 0.06 16 41 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 43 H 0.08 0.99 7.97 -51.93 -0.41 0.58 16 44 H 0.08 0.82 7.93 -51.93 -0.41 0.41 16 LS Contribution 346.67 15.07 5.22 5.22 Total: -1.00 -34.04 346.67 -7.52 -41.56 By element: Atomic # 1 Polarization: 6.90 SS G_CDS: -6.45 Total: 0.45 kcal Atomic # 6 Polarization: -25.00 SS G_CDS: 0.37 Total: -24.63 kcal Atomic # 7 Polarization: -38.26 SS G_CDS: 0.35 Total: -37.91 kcal Atomic # 8 Polarization: -46.16 SS G_CDS: -2.53 Total: -48.69 kcal Atomic # 14 Polarization: 24.72 SS G_CDS: -3.99 Total: 20.73 kcal Atomic # 16 Polarization: 43.76 SS G_CDS: -0.50 Total: 43.26 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.04 -7.52 -41.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424916802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -91.925 kcal (2) G-P(sol) polarization free energy of solvation -34.038 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds