Wall clock time and date at job start Tue Mar 31 2020 16:49:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.53002 * 109.47145 * 2 1 4 4 C 1.50700 * 109.47077 * 119.99333 * 2 1 3 5 5 H 1.07998 * 119.99510 * 125.40865 * 4 2 1 6 6 C 1.37871 * 120.00327 * 305.41739 * 4 2 1 7 7 N 1.31522 * 120.00162 * 150.78971 * 6 4 2 8 8 Si 1.86800 * 119.99971 * 330.78698 * 6 4 2 9 9 H 1.48503 * 109.46972 * 180.02562 * 8 6 4 10 10 H 1.48498 * 109.47279 * 60.00421 * 8 6 4 11 11 H 1.48506 * 109.47249 * 299.99843 * 8 6 4 12 12 C 1.52990 * 109.47326 * 240.00102 * 2 1 3 13 13 S 1.81396 * 109.47441 * 59.99628 * 12 2 1 14 14 O 1.42093 * 110.54392 * 291.62814 * 13 12 2 15 15 O 1.42109 * 110.54187 * 68.37967 * 13 12 2 16 16 N 1.65602 * 104.45140 * 180.02562 * 13 12 2 17 17 C 1.47128 * 125.61280 * 90.02723 * 16 13 12 18 18 C 1.54569 * 107.33053 * 180.95100 * 17 16 13 19 19 C 1.53754 * 102.78881 * 20.92265 * 18 17 16 20 20 C 1.53145 * 111.49318 * 86.03776 * 19 18 17 21 21 C 1.54908 * 101.67219 * 137.17522 * 20 19 18 22 22 O 1.45989 * 104.54219 * 334.12463 * 21 20 19 23 23 C 1.34539 * 109.94485 * 29.75417 * 22 21 20 24 24 O 1.20829 * 125.39782 * 159.67794 * 23 22 21 25 25 C 1.47699 * 125.60909 * 269.71592 * 16 13 12 26 26 H 1.09007 * 109.47720 * 292.48248 * 1 2 3 27 27 H 1.09000 * 109.47341 * 52.48223 * 1 2 3 28 28 H 1.08999 * 109.47413 * 172.48304 * 1 2 3 29 29 H 1.08994 * 109.47366 * 183.42498 * 3 2 1 30 30 H 1.09001 * 109.47019 * 303.42616 * 3 2 1 31 31 H 1.09009 * 109.47241 * 63.42055 * 3 2 1 32 32 H 0.97001 * 119.99740 * 354.96124 * 7 6 4 33 33 H 1.09008 * 109.47487 * 180.02562 * 12 2 1 34 34 H 1.09004 * 109.47188 * 299.99995 * 12 2 1 35 35 H 1.09001 * 109.87215 * 300.39070 * 17 16 13 36 36 H 1.09006 * 109.87045 * 61.51451 * 17 16 13 37 37 H 1.08996 * 110.74988 * 139.24926 * 18 17 16 38 38 H 1.09005 * 110.75007 * 262.60311 * 18 17 16 39 39 H 1.09002 * 110.99013 * 255.26463 * 20 19 18 40 40 H 1.08997 * 110.98687 * 19.07984 * 20 19 18 41 41 H 1.08997 * 110.42378 * 92.88821 * 21 20 19 42 42 H 1.08995 * 110.42245 * 215.36279 * 21 20 19 43 43 H 1.08991 * 110.39584 * 276.14306 * 25 16 13 44 44 H 1.09006 * 110.38374 * 38.52747 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.7232 -1.5347 1.1339 6 6 1.6097 -0.3078 2.4797 7 7 1.5397 -1.1789 3.4625 8 14 1.1367 1.4749 2.7762 9 1 0.7212 1.6479 4.1913 10 1 0.0111 1.8439 1.8806 11 1 2.3025 2.3501 2.4926 12 6 2.0400 -0.7212 -1.2492 13 16 1.4353 0.1338 -2.7303 14 8 0.0280 -0.0184 -2.8543 15 8 2.0480 1.4100 -2.8544 16 7 2.0530 -0.7409 -3.9935 17 6 1.3955 -1.8833 -4.6471 18 6 2.3497 -2.3941 -5.7507 19 6 3.7138 -1.8445 -5.3023 20 6 4.4007 -2.7884 -4.3110 21 6 5.8613 -2.7756 -4.8267 22 8 5.7465 -2.4486 -6.2449 23 6 4.6616 -1.6804 -6.4523 24 8 4.4795 -0.9715 -7.4137 25 6 3.3518 -0.4984 -4.6537 26 1 -0.3635 0.3930 0.9496 27 1 -0.3634 0.6258 -0.8151 28 1 -0.3634 -1.0188 -0.1344 29 1 3.1282 1.4432 -0.0614 30 1 1.6273 1.9738 -0.8577 31 1 1.7275 1.9384 0.9191 32 1 1.7145 -2.1176 3.2919 33 1 3.1300 -0.7216 -1.2490 34 1 1.6766 -1.7489 -1.2492 35 1 1.2150 -2.6735 -3.9183 36 1 0.4527 -1.5638 -5.0911 37 1 2.3619 -3.4837 -5.7767 38 1 2.0697 -1.9867 -6.7222 39 1 4.3420 -2.3977 -3.2951 40 1 3.9755 -3.7905 -4.3675 41 1 6.4417 -2.0137 -4.3065 42 1 6.3185 -3.7567 -4.6986 43 1 3.2531 0.2776 -5.4127 44 1 4.1052 -0.2174 -3.9177 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001424916802.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:49 Heat of formation + Delta-G solvation = -158.192253 kcal Electronic energy + Delta-G solvation = -28353.247535 eV Core-core repulsion = 24397.708227 eV Total energy + Delta-G solvation = -3955.539308 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.53174 -39.15306 -38.63013 -38.43173 -38.23497 -37.00468 -34.11753 -33.68058 -31.07055 -29.71579 -28.92157 -28.14797 -26.60696 -25.83049 -23.64288 -23.33735 -21.51652 -21.04534 -19.99077 -19.11176 -18.76238 -18.07515 -17.79687 -17.37856 -17.08554 -16.88081 -16.51094 -16.25199 -15.38070 -15.14543 -15.09989 -14.95653 -14.73889 -14.56832 -14.44436 -14.20445 -14.13315 -13.94537 -13.46526 -13.26519 -13.18238 -13.09733 -12.82414 -12.78401 -12.75916 -12.53376 -12.32458 -12.30309 -12.00698 -11.85322 -11.78181 -11.67616 -11.45315 -11.23845 -11.00027 -10.80902 -10.29065 -10.06028 -8.73349 -6.30928 -0.81523 0.83383 1.43244 1.45797 1.61770 1.68324 2.21297 2.44077 2.70681 2.78818 2.95367 3.00915 3.20204 3.29593 3.63548 3.73703 3.77665 4.00227 4.11795 4.16703 4.22291 4.26520 4.38416 4.50783 4.54907 4.58026 4.66861 4.69933 4.71483 4.74404 4.78034 4.90911 4.93744 4.94764 4.99400 5.07770 5.14114 5.27799 5.40166 5.53826 5.66233 6.00585 6.10084 6.29402 6.61480 7.36492 8.60931 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020464 B = 0.003795 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1367.918858 B = 7375.963279 C = 7874.917242 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.048 3.952 3 C -0.187 4.187 4 C -0.594 4.594 5 H 0.043 0.957 6 C 0.004 3.996 7 N -0.919 5.919 8 Si 1.057 2.943 9 H -0.304 1.304 10 H -0.251 1.251 11 H -0.263 1.263 12 C -0.573 4.573 13 S 2.622 3.378 14 O -0.980 6.980 15 O -0.982 6.982 16 N -1.013 6.013 17 C 0.111 3.889 18 C -0.097 4.097 19 C -0.138 4.138 20 C -0.142 4.142 21 C 0.047 3.953 22 O -0.359 6.359 23 C 0.505 3.495 24 O -0.488 6.488 25 C 0.137 3.863 26 H 0.054 0.946 27 H 0.048 0.952 28 H 0.059 0.941 29 H 0.071 0.929 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.263 0.737 33 H 0.142 0.858 34 H 0.139 0.861 35 H 0.095 0.905 36 H 0.072 0.928 37 H 0.125 0.875 38 H 0.079 0.921 39 H 0.111 0.889 40 H 0.122 0.878 41 H 0.100 0.900 42 H 0.142 0.858 43 H 0.067 0.933 44 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.185 -6.597 -17.067 19.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.045 3.955 3 C -0.244 4.244 4 C -0.632 4.632 5 H 0.061 0.939 6 C -0.199 4.199 7 N -0.553 5.553 8 Si 0.884 3.116 9 H -0.233 1.233 10 H -0.177 1.177 11 H -0.190 1.190 12 C -0.705 4.705 13 S 2.721 3.279 14 O -0.970 6.970 15 O -0.972 6.972 16 N -0.852 5.852 17 C -0.013 4.013 18 C -0.136 4.136 19 C -0.141 4.141 20 C -0.179 4.179 21 C -0.026 4.026 22 O -0.276 6.276 23 C 0.345 3.655 24 O -0.373 6.373 25 C 0.012 3.988 26 H 0.073 0.927 27 H 0.067 0.933 28 H 0.078 0.922 29 H 0.090 0.910 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.072 0.928 33 H 0.160 0.840 34 H 0.158 0.842 35 H 0.113 0.887 36 H 0.091 0.909 37 H 0.144 0.856 38 H 0.098 0.902 39 H 0.129 0.871 40 H 0.141 0.859 41 H 0.118 0.882 42 H 0.160 0.840 43 H 0.085 0.915 44 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 5.196 -4.477 -16.557 17.921 hybrid contribution 0.779 -1.485 -0.479 1.744 sum 5.975 -5.962 -17.036 19.012 Atomic orbital electron populations 1.22636 0.97232 1.01914 1.01395 1.18175 0.92385 0.92128 0.92790 1.22817 1.02939 0.97783 1.00829 1.21721 1.31256 1.18817 0.91389 0.93874 1.26604 0.93447 1.06847 0.92971 1.70963 1.43640 1.03742 1.36949 0.84151 0.78611 0.73982 0.74819 1.23266 1.17723 1.18968 1.30377 1.12878 1.13369 1.13917 1.04658 0.73814 0.74310 0.75091 1.93522 1.30637 1.86767 1.86074 1.93524 1.78482 1.39096 1.86096 1.58625 1.30170 1.47999 1.48400 1.22054 0.96159 0.87421 0.95685 1.22549 0.89194 1.03415 0.98453 1.22253 0.97844 0.98398 0.95624 1.23064 0.93921 1.01345 0.99547 1.24662 0.97967 1.05520 0.74444 1.87154 1.45790 1.62918 1.31732 1.22618 0.81656 0.75154 0.86030 1.90705 1.77305 1.34946 1.34328 1.21825 0.84687 0.95011 0.97280 0.92718 0.93303 0.92194 0.90980 0.92632 0.93540 0.92792 0.83972 0.84249 0.88722 0.90938 0.85641 0.90205 0.87066 0.85922 0.88163 0.83971 0.91462 0.88305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -7.49 7.38 71.98 0.53 -6.96 16 2 C 0.05 2.05 0.52 -52.93 -0.03 2.02 16 3 C -0.19 -7.76 7.33 71.98 0.53 -7.23 16 4 C -0.59 -30.16 8.42 25.60 0.22 -29.95 16 5 H 0.04 2.31 7.99 -2.91 -0.02 2.28 16 6 C 0.00 0.21 5.05 84.65 0.43 0.64 16 7 N -0.92 -53.79 13.70 21.45 0.29 -53.49 16 8 Si 1.06 48.97 23.47 68.60 1.61 50.58 16 9 H -0.30 -14.46 7.11 99.48 0.71 -13.76 16 10 H -0.25 -10.70 5.79 99.48 0.58 -10.12 16 11 H -0.26 -11.28 6.72 99.48 0.67 -10.61 16 12 C -0.57 -18.43 5.11 71.98 0.37 -18.07 16 13 S 2.62 82.80 4.68 -56.49 -0.26 82.53 16 14 O -0.98 -35.84 15.38 -127.65 -1.96 -37.81 16 15 O -0.98 -35.87 15.29 -127.65 -1.95 -37.82 16 16 N -1.01 -23.16 3.63 -507.20 -1.84 -25.00 16 17 C 0.11 1.92 6.84 86.79 0.59 2.51 16 18 C -0.10 -1.27 5.94 31.38 0.19 -1.09 16 19 C -0.14 -2.06 0.76 -52.62 -0.04 -2.10 16 20 C -0.14 -1.17 6.33 31.29 0.20 -0.97 16 21 C 0.05 0.37 7.93 72.63 0.58 0.94 16 22 O -0.36 -6.13 11.08 -54.81 -0.61 -6.74 16 23 C 0.50 10.26 7.35 71.00 0.52 10.78 16 24 O -0.49 -13.81 17.87 21.58 0.39 -13.42 16 25 C 0.14 2.77 5.76 86.40 0.50 3.26 16 26 H 0.05 2.45 4.47 -2.38 -0.01 2.44 16 27 H 0.05 1.96 6.02 -2.39 -0.01 1.95 16 28 H 0.06 2.46 8.13 -2.39 -0.02 2.44 16 29 H 0.07 2.78 8.14 -2.39 -0.02 2.76 16 30 H 0.05 2.17 5.72 -2.39 -0.01 2.16 16 31 H 0.05 1.98 2.28 -2.38 -0.01 1.97 16 32 H 0.26 15.25 8.73 -92.71 -0.81 14.44 16 33 H 0.14 3.90 8.14 -2.39 -0.02 3.88 16 34 H 0.14 3.99 8.14 -2.39 -0.02 3.97 16 35 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 36 H 0.07 1.36 8.14 -2.38 -0.02 1.34 16 37 H 0.13 0.83 7.66 -2.39 -0.02 0.82 16 38 H 0.08 1.22 8.05 -2.38 -0.02 1.20 16 39 H 0.11 0.86 7.74 -2.39 -0.02 0.84 16 40 H 0.12 0.47 7.56 -2.39 -0.02 0.46 16 41 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 42 H 0.14 0.35 8.14 -2.39 -0.02 0.33 16 43 H 0.07 1.58 7.97 -2.39 -0.02 1.56 16 44 H 0.10 1.68 7.93 -2.38 -0.02 1.66 16 Total: -1.00 -74.58 346.67 1.04 -73.54 By element: Atomic # 1 Polarization: 13.00 SS G_CDS: 0.81 Total: 13.81 kcal Atomic # 6 Polarization: -50.76 SS G_CDS: 4.57 Total: -46.19 kcal Atomic # 7 Polarization: -76.94 SS G_CDS: -1.55 Total: -78.49 kcal Atomic # 8 Polarization: -91.65 SS G_CDS: -4.14 Total: -95.79 kcal Atomic # 14 Polarization: 48.97 SS G_CDS: 1.61 Total: 50.58 kcal Atomic # 16 Polarization: 82.80 SS G_CDS: -0.26 Total: 82.53 kcal Total: -74.58 1.04 -73.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001424916802.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.652 kcal (2) G-P(sol) polarization free energy of solvation -74.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds