Wall clock time and date at job start Tue Mar 31 2020 15:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38552 * 120.10781 * 2 1 4 4 O 1.35747 * 119.72684 * 359.95441 * 3 2 1 5 5 C 1.39329 * 120.54390 * 179.97438 * 3 2 1 6 6 C 1.36492 * 120.42951 * 359.97412 * 5 3 2 7 7 C 1.39930 * 119.79807 * 0.04737 * 6 5 3 8 8 C 1.46433 * 120.99894 * 179.97438 * 7 6 5 9 9 C 1.50709 * 120.90283 * 359.95134 * 8 7 6 10 10 N 1.46901 * 109.46798 * 80.00349 * 9 8 7 11 11 C 1.47962 * 110.99645 * 170.00157 * 10 9 8 12 12 C 1.53939 * 86.17954 * 222.41370 * 11 10 9 13 13 O 1.42901 * 113.73443 * 269.25769 * 12 11 10 14 14 C 1.50699 * 113.73181 * 138.07765 * 12 11 10 15 15 H 1.07999 * 120.00015 * 4.91121 * 14 12 11 16 16 C 1.37879 * 119.99686 * 184.90847 * 14 12 11 17 17 N 1.31521 * 119.99972 * 13.82310 * 16 14 12 18 18 Si 1.86792 * 119.99875 * 193.81760 * 16 14 12 19 19 H 1.48504 * 109.47216 * 180.02562 * 18 16 14 20 20 H 1.48504 * 109.47601 * 300.00327 * 18 16 14 21 21 H 1.48506 * 109.47155 * 60.00602 * 18 16 14 22 22 C 1.47957 * 111.00157 * 70.64161 * 10 9 8 23 23 C 1.35844 * 118.19549 * 180.22928 * 8 7 6 24 24 C 1.41006 * 119.82885 * 359.46501 * 23 8 7 25 25 O 1.21796 * 119.15806 * 180.30470 * 24 23 8 26 26 O 1.34221 * 121.69079 * 0.57742 * 24 23 8 27 27 C 1.35032 * 121.46112 * 359.70329 * 26 24 23 28 28 H 1.09000 * 109.47453 * 270.02596 * 1 2 3 29 29 H 1.09005 * 109.46882 * 30.02825 * 1 2 3 30 30 H 1.08999 * 109.47217 * 150.02013 * 1 2 3 31 31 H 0.96698 * 114.00288 * 90.00117 * 4 3 2 32 32 H 1.08002 * 119.78311 * 180.02562 * 5 3 2 33 33 H 1.08003 * 120.10132 * 180.02562 * 6 5 3 34 34 H 1.08996 * 109.47024 * 319.99949 * 9 8 7 35 35 H 1.08995 * 109.46678 * 200.00032 * 9 8 7 36 36 H 1.08999 * 113.76019 * 108.09949 * 11 10 9 37 37 H 1.09000 * 113.85879 * 336.74722 * 11 10 9 38 38 H 0.96693 * 113.99776 * 171.47023 * 13 12 11 39 39 H 0.97001 * 119.99982 * 5.87544 * 17 16 14 40 40 H 1.08994 * 113.76072 * 23.25977 * 22 10 9 41 41 H 1.09001 * 113.75391 * 251.89917 * 22 10 9 42 42 H 1.07999 * 120.08837 * 179.74816 * 23 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2020 1.1986 0.0000 4 8 1.5199 2.3722 -0.0009 5 6 3.5953 1.2092 0.0005 6 6 4.2955 0.0376 0.0016 7 6 3.6099 -1.1823 0.0012 8 6 4.3347 -2.4547 0.0017 9 6 5.8414 -2.4872 0.0017 10 7 6.3361 -2.2568 1.3656 11 6 7.7902 -2.5164 1.4530 12 6 7.4797 -3.2219 2.7855 13 8 7.5437 -2.3582 3.9222 14 6 8.2393 -4.5086 2.9820 15 1 8.9827 -4.8124 2.2599 16 6 7.9851 -5.2978 4.0836 17 7 6.9117 -5.0834 4.8126 18 14 9.1654 -6.6715 4.5406 19 1 8.6692 -7.3669 5.7553 20 1 9.2560 -7.6402 3.4186 21 1 10.5092 -6.1002 4.8110 22 6 6.0560 -3.4208 2.2350 23 6 3.6120 -3.6049 -0.0036 24 6 2.2031 -3.5481 0.0021 25 8 1.5673 -4.5870 0.0029 26 8 1.5446 -2.3786 0.0011 27 6 2.2025 -1.1993 0.0006 28 1 -0.3634 0.0005 1.0276 29 1 -0.3633 0.8898 -0.5143 30 1 -0.3633 -0.8902 -0.5135 31 1 1.3216 2.7127 0.8822 32 1 4.1246 2.1506 0.0009 33 1 5.3754 0.0520 0.0024 34 1 6.2216 -1.7084 -0.6592 35 1 6.1837 -3.4607 -0.3494 36 1 8.3915 -1.6140 1.5636 37 1 8.1659 -3.1855 0.6789 38 1 7.2246 -2.7615 4.7410 39 1 6.2554 -4.4280 4.5285 40 1 5.9227 -4.3547 1.6890 41 1 5.2716 -3.2409 2.9702 42 1 4.1152 -4.5605 -0.0074 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001459990182.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:59:41 Heat of formation + Delta-G solvation = -83.872864 kcal Electronic energy + Delta-G solvation = -28545.668357 eV Core-core repulsion = 24457.907829 eV Total energy + Delta-G solvation = -4087.760528 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.04700 -39.78105 -39.54075 -37.85292 -36.78897 -35.44542 -34.11304 -32.60091 -32.31276 -29.44699 -29.35275 -27.19632 -25.94020 -25.42621 -24.43984 -23.66957 -22.35864 -21.01942 -20.06758 -19.05434 -18.09277 -17.86694 -17.75091 -17.50219 -16.82513 -15.69071 -15.55146 -15.46247 -15.08891 -15.00035 -14.43623 -14.17456 -13.94509 -13.87827 -13.72779 -13.59236 -13.03923 -12.81004 -12.61538 -12.49049 -12.32306 -12.18428 -12.06155 -11.82788 -11.40086 -11.29275 -11.03266 -10.96151 -10.83909 -10.48284 -10.25541 -10.20811 -10.14470 -9.28651 -8.85255 -8.78520 -8.63059 -8.40230 -7.97195 -6.63427 -4.42995 0.05183 0.83547 1.32887 2.27705 2.68421 3.31018 3.34629 3.41678 3.52893 3.82759 4.02172 4.10305 4.25942 4.32704 4.49896 4.56534 4.73921 4.90981 4.93995 5.00113 5.25102 5.31856 5.36899 5.41298 5.47753 5.53150 5.59643 5.70537 5.74830 5.86905 5.89368 5.95305 6.00279 6.06605 6.17808 6.23155 6.33413 6.58000 6.73989 6.91683 7.10382 7.21300 7.42974 7.51677 7.73299 8.11431 8.49819 8.92367 9.27898 10.67918 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.016696 B = 0.003371 C = 0.003050 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1676.623311 B = 8303.135359 C = 9178.247499 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.133 4.133 3 C 0.155 3.845 4 O -0.490 6.490 5 C -0.164 4.164 6 C -0.027 4.027 7 C -0.142 4.142 8 C 0.052 3.948 9 C 0.042 3.958 10 N -0.469 5.469 11 C 0.021 3.979 12 C 0.225 3.775 13 O -0.565 6.565 14 C -0.623 4.623 15 H 0.060 0.940 16 C 0.037 3.963 17 N -0.897 5.897 18 Si 1.063 2.937 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.284 1.284 22 C -0.023 4.023 23 C -0.253 4.253 24 C 0.514 3.486 25 O -0.467 6.467 26 O -0.270 6.270 27 C 0.157 3.843 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.397 0.603 32 H 0.140 0.860 33 H 0.148 0.852 34 H 0.091 0.909 35 H 0.062 0.938 36 H 0.081 0.919 37 H 0.072 0.928 38 H 0.372 0.628 39 H 0.270 0.730 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.798 12.470 -10.075 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.134 4.134 3 C 0.110 3.890 4 O -0.301 6.301 5 C -0.182 4.182 6 C -0.045 4.045 7 C -0.143 4.143 8 C 0.051 3.949 9 C -0.086 4.086 10 N -0.192 5.192 11 C -0.108 4.108 12 C 0.184 3.816 13 O -0.372 6.372 14 C -0.661 4.661 15 H 0.078 0.922 16 C -0.169 4.169 17 N -0.534 5.534 18 Si 0.890 3.110 19 H -0.205 1.205 20 H -0.212 1.212 21 H -0.211 1.211 22 C -0.152 4.152 23 C -0.273 4.273 24 C 0.364 3.636 25 O -0.356 6.356 26 O -0.182 6.182 27 C 0.112 3.888 28 H 0.091 0.909 29 H 0.095 0.905 30 H 0.092 0.908 31 H 0.254 0.746 32 H 0.158 0.842 33 H 0.166 0.834 34 H 0.109 0.891 35 H 0.080 0.920 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.221 0.779 39 H 0.082 0.918 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -8.011 11.826 -9.838 17.344 hybrid contribution -0.167 -0.078 -0.619 0.646 sum -8.178 11.748 -10.457 17.727 Atomic orbital electron populations 1.20574 0.89188 1.03670 1.02882 1.19482 0.97617 0.89224 1.07058 1.18084 0.89441 0.84283 0.97221 1.84719 1.76153 1.35351 1.33915 1.21158 0.92998 0.99525 1.04567 1.20855 1.00964 0.89626 0.93077 1.19005 0.91217 0.94766 1.09307 1.21466 0.96481 0.90756 0.86216 1.21817 0.88761 1.02175 0.95818 1.68752 1.07603 1.38538 1.04337 1.24055 0.88811 0.99780 0.98114 1.19986 0.89766 0.88412 0.83452 1.86220 1.88083 1.43317 1.19563 1.22319 1.25172 1.05840 1.12748 0.92203 1.25921 0.98188 1.00061 0.92743 1.70910 1.08371 1.34082 1.39994 0.83636 0.75335 0.75358 0.76625 1.20535 1.21245 1.21067 1.24944 1.02593 0.91067 0.96630 1.22479 0.92618 1.00881 1.11366 1.19155 0.88325 0.80850 0.75276 1.90978 1.70705 1.26827 1.47045 1.83511 1.43246 1.13749 1.77729 1.18611 0.89159 0.83433 0.97571 0.90927 0.90460 0.90776 0.74572 0.84226 0.83431 0.89130 0.91953 0.90063 0.90956 0.77904 0.91812 0.91305 0.91183 0.81994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.02 9.58 36.01 0.34 -0.67 16 2 C -0.13 -1.53 5.90 -104.36 -0.62 -2.14 16 3 C 0.15 1.55 6.68 -39.06 -0.26 1.29 16 4 O -0.49 -3.85 12.50 -18.95 -0.24 -4.09 16 5 C -0.16 -1.62 9.91 -39.81 -0.39 -2.02 16 6 C -0.03 -0.31 9.38 -39.58 -0.37 -0.68 16 7 C -0.14 -1.92 5.87 -105.01 -0.62 -2.54 16 8 C 0.05 0.75 5.15 -102.18 -0.53 0.23 16 9 C 0.04 0.60 4.34 -4.97 -0.02 0.58 16 10 N -0.47 -8.36 6.25 -239.69 -1.50 -9.86 16 11 C 0.02 0.40 7.36 -2.76 -0.02 0.38 16 12 C 0.22 5.24 1.08 -90.84 -0.10 5.14 16 13 O -0.57 -13.91 13.45 -35.23 -0.47 -14.39 16 14 C -0.62 -16.05 8.56 -34.44 -0.29 -16.34 16 15 H 0.06 1.53 7.85 -52.49 -0.41 1.12 16 16 C 0.04 0.97 5.26 -17.82 -0.09 0.87 16 17 N -0.90 -24.48 12.80 55.43 0.71 -23.77 16 18 Si 1.06 23.35 29.93 -169.99 -5.09 18.26 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.82 16 20 H -0.29 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.06 7.11 56.52 0.40 -5.65 16 22 C -0.02 -0.49 5.77 -2.77 -0.02 -0.50 16 23 C -0.25 -3.90 9.42 -39.39 -0.37 -4.27 16 24 C 0.51 8.67 7.89 31.78 0.25 8.92 16 25 O -0.47 -9.12 17.91 -19.60 -0.35 -9.47 16 26 O -0.27 -4.20 8.92 -20.82 -0.19 -4.39 16 27 C 0.16 2.16 6.72 -38.48 -0.26 1.90 16 28 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 0.64 7.52 -51.93 -0.39 0.25 16 30 H 0.07 0.76 7.57 -51.93 -0.39 0.37 16 31 H 0.40 1.31 9.06 45.56 0.41 1.73 16 32 H 0.14 1.08 8.06 -52.49 -0.42 0.66 16 33 H 0.15 1.59 6.77 -52.48 -0.36 1.23 16 34 H 0.09 1.07 7.17 -51.93 -0.37 0.70 16 35 H 0.06 0.88 7.58 -51.93 -0.39 0.49 16 36 H 0.08 1.52 8.14 -51.93 -0.42 1.10 16 37 H 0.07 1.30 7.75 -51.93 -0.40 0.90 16 38 H 0.37 9.19 6.95 45.56 0.32 9.50 16 39 H 0.27 7.25 5.52 -40.82 -0.23 7.02 16 40 H 0.07 1.47 7.73 -51.93 -0.40 1.07 16 41 H 0.07 1.56 7.79 -51.93 -0.40 1.16 16 42 H 0.16 2.41 8.05 -52.49 -0.42 1.99 16 LS Contribution 353.62 15.07 5.33 5.33 Total: -1.00 -31.20 353.62 -8.67 -39.87 By element: Atomic # 1 Polarization: 15.88 SS G_CDS: -3.51 Total: 12.37 kcal Atomic # 6 Polarization: -6.50 SS G_CDS: -3.36 Total: -9.86 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: -0.79 Total: -33.63 kcal Atomic # 8 Polarization: -31.09 SS G_CDS: -1.25 Total: -32.34 kcal Atomic # 14 Polarization: 23.35 SS G_CDS: -5.09 Total: 18.26 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -31.20 -8.67 -39.87 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001459990182.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.003 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds