Wall clock time and date at job start Tue Mar 31 2020 17:12:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42900 * 109.47160 * 2 1 4 4 C 1.53001 * 109.46958 * 119.99950 * 2 1 3 5 5 N 1.46502 * 109.47525 * 305.00079 * 4 2 1 6 6 C 1.34768 * 119.99889 * 180.02562 * 5 4 2 7 7 O 1.21277 * 120.00518 * 359.97438 * 6 5 4 8 8 C 1.50700 * 119.99798 * 179.97438 * 6 5 4 9 9 H 1.09003 * 109.47088 * 299.99556 * 8 6 5 10 10 C 1.50695 * 109.47256 * 59.99572 * 8 6 5 11 11 H 1.07997 * 120.00468 * 235.34154 * 10 8 6 12 12 C 1.37877 * 119.99672 * 55.34997 * 10 8 6 13 13 N 1.31516 * 120.00347 * 1.97575 * 12 10 8 14 14 Si 1.86802 * 119.99931 * 181.98008 * 12 10 8 15 15 H 1.48497 * 109.47150 * 359.97438 * 14 12 10 16 16 H 1.48495 * 109.47377 * 119.99557 * 14 12 10 17 17 H 1.48504 * 109.47133 * 239.99537 * 14 12 10 18 18 C 1.50703 * 109.47278 * 179.97438 * 8 6 5 19 19 C 1.38235 * 120.00145 * 226.94170 * 18 8 6 20 20 C 1.38229 * 120.00210 * 179.78359 * 19 18 8 21 21 C 1.38242 * 119.99968 * 0.45106 * 20 19 18 22 22 C 1.38237 * 119.99640 * 359.80549 * 21 20 19 23 23 C 1.38234 * 120.00183 * 359.97438 * 22 21 20 24 24 C 1.52994 * 109.47205 * 239.99879 * 2 1 3 25 25 F 1.39904 * 109.46924 * 60.00131 * 24 2 1 26 26 F 1.39898 * 109.47405 * 180.02562 * 24 2 1 27 27 F 1.39903 * 109.47552 * 300.00333 * 24 2 1 28 28 H 1.08993 * 109.47449 * 59.99576 * 1 2 3 29 29 H 1.09008 * 109.46896 * 299.99966 * 1 2 3 30 30 H 1.08996 * 109.47453 * 180.02562 * 1 2 3 31 31 H 0.96703 * 113.99939 * 179.97438 * 3 2 1 32 32 H 1.09000 * 109.47396 * 65.00412 * 4 2 1 33 33 H 1.09006 * 109.47262 * 184.99900 * 4 2 1 34 34 H 0.96996 * 119.99338 * 359.97438 * 5 4 2 35 35 H 0.96999 * 120.00434 * 180.02562 * 13 12 10 36 36 H 1.08003 * 119.99665 * 0.02562 * 19 18 8 37 37 H 1.08000 * 120.00381 * 180.27394 * 20 19 18 38 38 H 1.08000 * 120.00014 * 179.83495 * 21 20 19 39 39 H 1.07998 * 119.99823 * 180.02562 * 22 21 20 40 40 H 1.07998 * 119.99833 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0400 -0.7212 1.2493 5 7 1.4558 -0.1037 2.4425 6 6 1.7647 -0.5769 3.6659 7 8 2.5259 -1.5142 3.7793 8 6 1.1643 0.0587 4.8933 9 1 1.4528 1.1090 4.9367 10 6 -0.3376 -0.0474 4.8304 11 1 -0.9456 0.8416 4.9092 12 6 -0.9355 -1.2797 4.6723 13 7 -0.1970 -2.3665 4.6154 14 14 -2.7944 -1.4057 4.5387 15 1 -3.3904 -0.0487 4.6315 16 1 -3.1568 -2.0178 3.2352 17 1 -3.3140 -2.2507 5.6438 18 6 1.6665 -0.6518 6.1238 19 6 0.7794 -1.0294 7.1144 20 6 1.2394 -1.6851 8.2410 21 6 2.5880 -1.9549 8.3813 22 6 3.4758 -1.5726 7.3931 23 6 3.0151 -0.9209 6.2644 24 6 2.0400 -0.7212 -1.2492 25 9 1.5737 -0.0617 -2.3915 26 9 3.4390 -0.7218 -1.2489 27 9 1.5737 -2.0403 -1.2493 28 1 -0.3634 0.5139 -0.8899 29 1 -0.3633 0.5139 0.8901 30 1 -0.3634 -1.0276 0.0005 31 1 2.9704 1.4236 0.0004 32 1 1.7517 -1.7715 1.2056 33 1 3.1263 -0.6444 1.2952 34 1 0.8473 0.6462 2.3518 35 1 -0.6176 -3.2335 4.5039 36 1 -0.2737 -0.8156 7.0063 37 1 0.5458 -1.9841 9.0129 38 1 2.9478 -2.4649 9.2628 39 1 4.5293 -1.7838 7.5026 40 1 3.7089 -0.6219 5.4926 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001466151671.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:12:59 Heat of formation + Delta-G solvation = -214.812506 kcal Electronic energy + Delta-G solvation = -29740.101315 eV Core-core repulsion = 25104.806077 eV Total energy + Delta-G solvation = -4635.295238 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.24651 -47.75914 -47.69281 -39.29091 -38.33451 -37.15235 -33.85435 -33.65012 -31.43462 -30.83963 -29.68670 -27.70913 -26.84614 -25.51006 -23.78107 -21.36887 -21.19803 -20.52261 -19.49904 -18.69534 -18.54017 -18.35107 -17.08253 -16.31995 -15.51256 -15.44785 -15.09040 -14.83812 -14.74986 -14.56412 -14.33666 -14.14687 -13.98363 -13.88203 -13.80785 -13.66259 -13.59813 -13.31156 -12.79115 -12.52298 -12.43524 -12.21073 -12.14309 -12.02467 -11.62443 -11.33471 -11.23799 -11.03437 -10.77440 -10.49725 -10.48088 -10.06801 -9.70969 -9.40616 -8.76922 -8.39811 -8.16655 -7.70630 -7.41897 -6.18209 -4.34890 2.45981 2.54967 2.60316 3.14934 3.26622 3.27446 3.43528 3.53169 3.79640 4.06120 4.17311 4.24879 4.39369 4.54697 4.71726 5.00979 5.09128 5.55128 5.60266 5.72970 5.83603 5.85006 5.96477 6.04555 6.07491 6.35262 6.50798 6.66048 6.77362 6.87122 7.09995 7.11513 7.19893 7.33293 7.54065 7.62801 7.65106 7.76204 8.14204 8.25141 8.50820 8.73322 9.31980 9.58316 10.82021 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.014499 B = 0.004283 C = 0.003623 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1930.727772 B = 6536.627858 C = 7727.194318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.090 3.910 3 O -0.525 6.525 4 C 0.103 3.897 5 N -0.727 5.727 6 C 0.552 3.448 7 O -0.545 6.545 8 C 0.058 3.942 9 H 0.058 0.942 10 C -0.541 4.541 11 H 0.068 0.932 12 C 0.074 3.926 13 N -0.841 5.841 14 Si 0.884 3.116 15 H -0.270 1.270 16 H -0.283 1.283 17 H -0.282 1.282 18 C -0.014 4.014 19 C -0.065 4.065 20 C -0.147 4.147 21 C -0.144 4.144 22 C -0.144 4.144 23 C -0.101 4.101 24 C 0.428 3.572 25 F -0.176 7.176 26 F -0.183 7.183 27 F -0.175 7.175 28 H 0.075 0.925 29 H 0.096 0.904 30 H 0.087 0.913 31 H 0.386 0.614 32 H 0.080 0.920 33 H 0.070 0.930 34 H 0.401 0.599 35 H 0.265 0.735 36 H 0.128 0.872 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.104 5.141 -7.481 9.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.046 3.954 3 O -0.332 6.332 4 C -0.023 4.023 5 N -0.383 5.383 6 C 0.341 3.659 7 O -0.420 6.420 8 C 0.037 3.963 9 H 0.076 0.924 10 C -0.578 4.578 11 H 0.086 0.914 12 C -0.134 4.134 13 N -0.474 5.474 14 Si 0.712 3.288 15 H -0.194 1.194 16 H -0.209 1.209 17 H -0.208 1.208 18 C -0.015 4.015 19 C -0.083 4.083 20 C -0.166 4.166 21 C -0.163 4.163 22 C -0.162 4.162 23 C -0.119 4.119 24 C 0.372 3.628 25 F -0.158 7.158 26 F -0.165 7.165 27 F -0.156 7.156 28 H 0.094 0.906 29 H 0.115 0.885 30 H 0.106 0.894 31 H 0.235 0.765 32 H 0.099 0.901 33 H 0.088 0.912 34 H 0.237 0.763 35 H 0.075 0.925 36 H 0.146 0.854 37 H 0.120 0.880 38 H 0.118 0.882 39 H 0.119 0.881 40 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 3.045 4.339 -7.434 9.130 hybrid contribution -0.613 -0.543 -0.576 1.001 sum 2.432 3.796 -8.009 9.191 Atomic orbital electron populations 1.21875 0.88485 1.04793 1.05233 1.22650 0.98748 0.83911 0.90057 1.86681 1.27896 1.22386 1.96189 1.21612 0.98419 0.98084 0.84187 1.45681 1.50938 1.37453 1.04189 1.21113 0.78156 0.82513 0.84094 1.90553 1.36994 1.28062 1.86439 1.17868 0.96841 0.94276 0.87340 0.92388 1.20741 0.88775 0.93682 1.54620 0.91359 1.25061 0.98010 0.95919 0.94414 1.70079 1.34730 0.98044 1.44505 0.86641 0.85799 0.78435 0.77969 1.19439 1.20890 1.20807 1.19794 0.91490 0.95636 0.94616 1.21137 1.00349 0.95049 0.91721 1.20993 0.95017 1.01850 0.98709 1.20778 0.93963 1.02658 0.98864 1.20819 0.98227 1.01816 0.95368 1.20965 0.95994 0.99057 0.95872 1.21487 0.75667 0.78369 0.87244 1.93186 1.88323 1.80662 1.53605 1.93176 1.30103 1.96364 1.96844 1.93210 1.88324 1.37326 1.96743 0.90607 0.88533 0.89436 0.76464 0.90147 0.91222 0.76309 0.92506 0.85448 0.88047 0.88216 0.88115 0.87552 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 8.37 37.16 0.31 -1.54 16 2 C 0.09 1.15 0.58 -90.62 -0.05 1.09 16 3 O -0.53 -6.02 12.87 -35.23 -0.45 -6.47 16 4 C 0.10 1.63 4.57 -4.04 -0.02 1.61 16 5 N -0.73 -13.22 5.09 -60.29 -0.31 -13.52 16 6 C 0.55 12.33 5.45 -10.99 -0.06 12.27 16 7 O -0.54 -13.88 13.95 5.56 0.08 -13.80 16 8 C 0.06 1.30 2.78 -94.08 -0.26 1.04 16 9 H 0.06 1.20 8.14 -51.93 -0.42 0.77 16 10 C -0.54 -12.57 7.11 -34.44 -0.24 -12.81 16 11 H 0.07 1.55 7.81 -52.49 -0.41 1.14 16 12 C 0.07 1.79 4.00 -17.82 -0.07 1.72 16 13 N -0.84 -22.09 10.89 55.43 0.60 -21.49 16 14 Si 0.88 19.06 29.54 -169.99 -5.02 14.04 16 15 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 16 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 17 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 18 C -0.01 -0.33 4.51 -104.62 -0.47 -0.81 16 19 C -0.06 -1.48 8.21 -39.59 -0.32 -1.80 16 20 C -0.15 -3.04 10.05 -39.58 -0.40 -3.44 16 21 C -0.14 -2.82 10.05 -39.58 -0.40 -3.22 16 22 C -0.14 -2.91 10.05 -39.58 -0.40 -3.31 16 23 C -0.10 -2.23 8.21 -39.58 -0.33 -2.56 16 24 C 0.43 5.42 2.38 37.15 0.09 5.51 16 25 F -0.18 -2.23 16.74 2.25 0.04 -2.19 16 26 F -0.18 -2.28 16.51 2.25 0.04 -2.24 16 27 F -0.17 -2.42 16.19 2.25 0.04 -2.38 16 28 H 0.07 0.84 7.80 -51.93 -0.41 0.44 16 29 H 0.10 1.27 6.58 -51.92 -0.34 0.93 16 30 H 0.09 1.13 7.80 -51.93 -0.41 0.72 16 31 H 0.39 3.26 8.69 45.56 0.40 3.65 16 32 H 0.08 1.45 7.66 -51.93 -0.40 1.05 16 33 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 34 H 0.40 6.73 6.87 -40.82 -0.28 6.45 16 35 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 36 H 0.13 3.00 6.04 -52.48 -0.32 2.68 16 37 H 0.10 1.84 8.06 -52.49 -0.42 1.41 16 38 H 0.10 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.10 1.76 8.06 -52.49 -0.42 1.34 16 40 H 0.11 2.32 7.01 -52.49 -0.37 1.96 16 LS Contribution 344.26 15.07 5.19 5.19 Total: -1.00 -28.83 344.26 -6.19 -35.02 By element: Atomic # 1 Polarization: 17.86 SS G_CDS: -3.77 Total: 14.09 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: -2.62 Total: -6.25 kcal Atomic # 7 Polarization: -35.31 SS G_CDS: 0.30 Total: -35.01 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.38 Total: -20.27 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 0.11 Total: -6.81 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -28.83 -6.19 -35.02 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001466151671.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.792 kcal (2) G-P(sol) polarization free energy of solvation -28.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -208.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.020 kcal (6) G-S(sol) free energy of system = (1) + (5) -214.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds