Wall clock time and date at job start Tue Mar 31 2020 17:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30996 * 1 3 3 C 1.50701 * 120.00080 * 2 1 4 4 N 1.46499 * 109.46992 * 234.99580 * 3 2 1 5 5 C 1.46502 * 120.00345 * 274.99969 * 4 3 2 6 6 C 1.50697 * 109.47079 * 85.00200 * 5 4 3 7 7 H 1.08000 * 119.99936 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99754 * 180.02562 * 6 5 4 9 9 N 1.31512 * 120.00085 * 359.97438 * 8 6 5 10 10 Si 1.86800 * 119.99983 * 179.97438 * 8 6 5 11 11 H 1.48506 * 109.47264 * 59.99488 * 10 8 6 12 12 H 1.48496 * 109.47266 * 179.97438 * 10 8 6 13 13 H 1.48505 * 109.47181 * 299.99816 * 10 8 6 14 14 S 1.65605 * 119.99782 * 94.99996 * 4 3 2 15 15 O 1.42098 * 104.27771 * 206.06877 * 14 4 3 16 16 O 1.42097 * 104.27570 * 333.92835 * 14 4 3 17 17 C 1.81397 * 104.45020 * 89.99811 * 14 4 3 18 18 H 1.09009 * 109.47430 * 64.99945 * 17 14 4 19 19 C 1.52998 * 109.47219 * 305.00089 * 17 14 4 20 20 C 1.53005 * 109.47260 * 179.97438 * 19 17 14 21 21 C 1.53003 * 109.46722 * 60.00032 * 20 19 17 22 22 C 1.53008 * 109.47011 * 299.99637 * 21 20 19 23 23 C 1.52995 * 109.46738 * 60.00661 * 22 21 20 24 24 H 1.08998 * 109.47347 * 59.99576 * 23 22 21 25 25 C 1.50698 * 109.46687 * 179.97438 * 23 22 21 26 26 O 1.20834 * 120.00044 * 120.00291 * 25 23 22 27 27 O 1.34222 * 120.00253 * 299.99362 * 25 23 22 28 28 H 1.07999 * 119.99751 * 179.97438 * 1 2 3 29 29 H 1.07996 * 119.99789 * 0.02562 * 1 2 3 30 30 H 1.08005 * 120.00347 * 179.97438 * 2 1 3 31 31 H 1.09002 * 109.47060 * 354.99792 * 3 2 1 32 32 H 1.09001 * 109.47380 * 114.99880 * 3 2 1 33 33 H 1.08998 * 109.47222 * 205.00373 * 5 4 3 34 34 H 1.09000 * 109.46517 * 324.99960 * 5 4 3 35 35 H 0.97003 * 120.00108 * 179.97438 * 9 8 6 36 36 H 1.08998 * 109.47153 * 299.99881 * 19 17 14 37 37 H 1.09002 * 109.46953 * 60.00289 * 19 17 14 38 38 H 1.08996 * 109.47116 * 179.97438 * 20 19 17 39 39 H 1.08998 * 109.47112 * 300.00116 * 20 19 17 40 40 H 1.08998 * 109.47258 * 60.00174 * 21 20 19 41 41 H 1.09004 * 109.46492 * 180.02562 * 21 20 19 42 42 H 1.08996 * 109.46432 * 180.02562 * 22 21 20 43 43 H 1.09002 * 109.47061 * 300.00378 * 22 21 20 44 44 H 0.96706 * 117.00593 * 180.02562 * 27 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9938 1.3318 -1.1314 5 6 4.3218 0.7267 -1.0023 6 6 4.2324 -0.7485 -1.2971 7 1 3.2814 -1.1911 -1.5544 8 6 5.3644 -1.5332 -1.2373 9 7 6.5223 -0.9943 -0.9234 10 14 5.2535 -3.3619 -1.6020 11 1 4.7514 -3.5613 -2.9852 12 1 6.5996 -3.9753 -1.4713 13 1 4.3214 -4.0029 -0.6399 14 16 2.5443 2.0461 -2.5562 15 8 3.3283 1.3870 -3.5412 16 8 1.1266 1.9509 -2.5640 17 6 3.0652 3.7747 -2.3801 18 1 4.1524 3.8220 -2.3160 19 6 2.4532 4.3647 -1.1080 20 6 2.8931 5.8226 -0.9591 21 6 2.4189 6.6247 -2.1727 22 6 3.0310 6.0347 -3.4448 23 6 2.5912 4.5770 -3.5936 24 1 1.5041 4.5302 -3.6579 25 6 3.1935 3.9961 -4.8469 26 8 3.9271 3.0384 -4.7769 27 8 2.9151 4.5422 -6.0409 28 1 -0.5400 -0.9353 -0.0004 29 1 -0.5399 0.9353 -0.0004 30 1 1.8500 -0.9353 0.0004 31 1 1.3586 2.1316 -0.0896 32 1 2.6213 1.4026 0.9314 33 1 5.0058 1.1975 -1.7084 34 1 4.6903 0.8727 0.0130 35 1 7.3187 -1.5465 -0.8810 36 1 1.3661 4.3176 -1.1721 37 1 2.7914 3.7935 -0.2434 38 1 2.4567 6.2430 -0.0531 39 1 3.9801 5.8693 -0.8948 40 1 1.3318 6.5780 -2.2370 41 1 2.7327 7.6633 -2.0668 42 1 2.6936 6.6065 -4.3092 43 1 4.1182 6.0815 -3.3804 44 1 3.3246 4.1347 -6.8165 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588826444.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:00:25 Heat of formation + Delta-G solvation = -142.551053 kcal Electronic energy + Delta-G solvation = -28811.123691 eV Core-core repulsion = 24856.262637 eV Total energy + Delta-G solvation = -3954.861054 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 4.37 seconds Orbital eigenvalues (eV) -40.61242 -38.18176 -36.57942 -36.21405 -36.00595 -35.03374 -32.98738 -31.88616 -31.55329 -31.11922 -27.34651 -25.02858 -24.63098 -23.18322 -22.29807 -21.31649 -20.12440 -19.35085 -18.16814 -17.93061 -17.17246 -16.91138 -16.43541 -16.07259 -15.49453 -15.26984 -14.73199 -14.50417 -14.33214 -14.14976 -13.90961 -13.57677 -13.38732 -13.14179 -12.78893 -12.60941 -12.27978 -11.93082 -11.80825 -11.73213 -11.62972 -11.56918 -11.35357 -11.16062 -10.98628 -10.96515 -10.91120 -10.79316 -10.67889 -10.61919 -10.42091 -10.29979 -9.92337 -9.73952 -9.47221 -8.82428 -8.35765 -8.00486 -5.98626 -4.00420 0.88479 2.18631 2.81212 2.87857 3.38086 3.41737 3.45508 3.50135 4.11154 4.37712 4.44588 4.50689 4.63323 4.75585 4.87927 5.01799 5.06579 5.19489 5.22740 5.30146 5.36031 5.41502 5.53386 5.54755 5.63811 5.74927 5.81381 5.85009 5.89287 5.92782 5.97506 6.12873 6.15270 6.27776 6.52800 6.58317 7.23945 7.25469 7.35591 7.47925 7.67410 7.86874 7.99315 8.29922 9.00807 9.63369 11.10404 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013721 B = 0.005039 C = 0.004432 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2040.157711 B = 5555.691359 C = 6315.839719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.150 4.150 3 C 0.159 3.841 4 N -0.980 5.980 5 C 0.256 3.744 6 C -0.518 4.518 7 H 0.061 0.939 8 C 0.061 3.939 9 N -0.898 5.898 10 Si 0.893 3.107 11 H -0.275 1.275 12 H -0.287 1.287 13 H -0.277 1.277 14 S 2.597 3.403 15 O -0.901 6.901 16 O -0.971 6.971 17 C -0.597 4.597 18 H 0.143 0.857 19 C -0.102 4.102 20 C -0.115 4.115 21 C -0.119 4.119 22 C -0.101 4.101 23 C -0.059 4.059 24 H 0.118 0.882 25 C 0.433 3.567 26 O -0.447 6.447 27 O -0.517 6.517 28 H 0.090 0.910 29 H 0.091 0.909 30 H 0.123 0.877 31 H 0.068 0.932 32 H 0.081 0.919 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.262 0.738 36 H 0.078 0.922 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.080 0.920 43 H 0.072 0.928 44 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.733 16.846 -1.034 19.003 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.169 4.169 3 C 0.033 3.967 4 N -0.818 5.818 5 C 0.135 3.865 6 C -0.558 4.558 7 H 0.080 0.920 8 C -0.140 4.140 9 N -0.538 5.538 10 Si 0.721 3.279 11 H -0.201 1.201 12 H -0.213 1.213 13 H -0.203 1.203 14 S 2.687 3.313 15 O -0.891 6.891 16 O -0.962 6.962 17 C -0.702 4.702 18 H 0.161 0.839 19 C -0.140 4.140 20 C -0.153 4.153 21 C -0.157 4.157 22 C -0.139 4.139 23 C -0.080 4.080 24 H 0.136 0.864 25 C 0.272 3.728 26 O -0.330 6.330 27 O -0.330 6.330 28 H 0.108 0.892 29 H 0.109 0.891 30 H 0.141 0.859 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.057 0.943 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.088 0.912 39 H 0.087 0.913 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.099 0.901 43 H 0.091 0.909 44 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -8.867 16.301 -1.354 18.606 hybrid contribution 0.760 -0.923 -0.473 1.286 sum -8.106 15.378 -1.827 17.479 Atomic orbital electron populations 1.23675 0.95921 1.01038 1.03205 1.23566 0.95761 1.00372 0.97233 1.20221 0.91007 0.94952 0.90500 1.57576 1.25808 1.69325 1.29132 1.19089 0.76056 0.93384 0.98012 1.21447 0.94663 0.93091 1.46558 0.92049 1.24904 0.95189 0.98745 0.95186 1.69904 0.98973 1.35996 1.48911 0.86636 0.77013 0.85124 0.79143 1.20083 1.21273 1.20251 1.05667 0.74523 0.76350 0.74752 1.93731 1.70398 1.68628 1.56329 1.93522 1.29868 1.85979 1.86814 1.30791 1.12519 1.26349 1.00529 0.83939 1.21376 1.00789 0.97474 0.94363 1.21508 1.01664 0.94178 0.97965 1.21567 1.00919 0.99225 0.93962 1.21460 1.01680 0.91481 0.99322 1.20671 1.02346 0.97972 0.86971 0.86433 1.23714 0.81259 0.82270 0.85596 1.91198 1.31999 1.23201 1.86635 1.84433 1.70865 1.60374 1.17324 0.89155 0.89062 0.85933 0.91395 0.90132 0.94264 0.94742 0.92793 0.90305 0.89432 0.91153 0.91344 0.91340 0.91155 0.90122 0.90913 0.72902 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.25 14.32 29.02 0.42 -2.84 16 2 C -0.15 -2.77 9.32 -36.02 -0.34 -3.10 16 3 C 0.16 2.75 4.62 -5.19 -0.02 2.73 16 4 N -0.98 -20.18 2.34 -116.95 -0.27 -20.46 16 5 C 0.26 6.39 5.04 -5.19 -0.03 6.36 16 6 C -0.52 -14.60 8.66 -34.44 -0.30 -14.90 16 7 H 0.06 1.75 6.82 -52.49 -0.36 1.39 16 8 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 9 N -0.90 -26.53 13.29 55.43 0.74 -25.79 16 10 Si 0.89 22.31 29.54 -169.99 -5.02 17.29 16 11 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 12 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 13 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 14 S 2.60 52.19 4.33 -107.50 -0.47 51.72 16 15 O -0.90 -22.64 13.38 -67.47 -0.90 -23.54 16 16 O -0.97 -20.02 16.98 -57.54 -0.98 -21.00 16 17 C -0.60 -8.67 1.98 -26.73 -0.05 -8.72 16 18 H 0.14 2.10 8.10 -51.92 -0.42 1.68 16 19 C -0.10 -1.16 4.28 -26.73 -0.11 -1.28 16 20 C -0.11 -1.02 5.92 -26.73 -0.16 -1.18 16 21 C -0.12 -0.95 5.92 -26.73 -0.16 -1.11 16 22 C -0.10 -0.96 5.14 -26.73 -0.14 -1.09 16 23 C -0.06 -0.75 2.16 -91.77 -0.20 -0.95 16 24 H 0.12 1.34 8.14 -51.93 -0.42 0.92 16 25 C 0.43 6.43 7.30 36.00 0.26 6.69 16 26 O -0.45 -8.77 12.91 -27.04 -0.35 -9.12 16 27 O -0.52 -5.78 13.33 -39.24 -0.52 -6.30 16 28 H 0.09 1.34 8.06 -52.49 -0.42 0.92 16 29 H 0.09 1.35 7.84 -52.49 -0.41 0.93 16 30 H 0.12 2.52 6.84 -52.48 -0.36 2.16 16 31 H 0.07 0.98 6.28 -51.93 -0.33 0.66 16 32 H 0.08 1.26 8.00 -51.93 -0.42 0.84 16 33 H 0.04 1.06 7.61 -51.93 -0.40 0.66 16 34 H 0.03 0.86 8.00 -51.93 -0.42 0.44 16 35 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 36 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.09 0.98 6.58 -51.93 -0.34 0.64 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 42 H 0.08 0.66 8.11 -51.93 -0.42 0.24 16 43 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.41 3.04 9.10 45.56 0.41 3.46 16 LS Contribution 364.20 15.07 5.49 5.49 Total: -1.00 -36.67 364.20 -9.18 -45.85 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: -5.97 Total: 3.58 kcal Atomic # 6 Polarization: -16.80 SS G_CDS: -0.92 Total: -17.72 kcal Atomic # 7 Polarization: -46.71 SS G_CDS: 0.46 Total: -46.25 kcal Atomic # 8 Polarization: -57.21 SS G_CDS: -2.75 Total: -59.96 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.29 kcal Atomic # 16 Polarization: 52.19 SS G_CDS: -0.47 Total: 51.72 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -36.67 -9.18 -45.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588826444.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.706 kcal (2) G-P(sol) polarization free energy of solvation -36.668 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.374 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.845 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.37 seconds