Wall clock time and date at job start Tue Mar 31 2020 18:05:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09004 * 109.46855 * 2 1 4 4 C 1.50702 * 109.47429 * 119.99799 * 2 1 3 5 5 O 1.20820 * 119.99894 * 95.17008 * 4 2 1 6 6 O 1.34233 * 119.99755 * 275.17342 * 4 2 1 7 7 N 1.46503 * 109.47525 * 239.99958 * 2 1 3 8 8 C 1.46501 * 119.99827 * 304.90334 * 7 2 1 9 9 C 1.53771 * 113.61435 * 213.53084 * 8 7 2 10 10 C 1.53777 * 87.08213 * 220.02040 * 9 8 7 11 11 C 1.53780 * 87.08122 * 25.43502 * 10 9 8 12 12 S 1.65601 * 119.99955 * 124.90441 * 7 2 1 13 13 O 1.42102 * 104.27432 * 206.07138 * 12 7 2 14 14 O 1.42095 * 104.28023 * 333.92814 * 12 7 2 15 15 C 1.81398 * 104.45058 * 90.00339 * 12 7 2 16 16 C 1.52994 * 109.47178 * 182.62157 * 15 12 7 17 17 C 1.50700 * 115.55469 * 57.57090 * 16 15 12 18 18 H 1.07997 * 119.99662 * 271.78099 * 17 16 15 19 19 C 1.37872 * 119.99813 * 91.77771 * 17 16 15 20 20 N 1.31511 * 120.00299 * 4.08096 * 19 17 16 21 21 Si 1.86799 * 119.99864 * 184.08724 * 19 17 16 22 22 H 1.48495 * 109.47659 * 89.99731 * 21 19 17 23 23 H 1.48507 * 109.47053 * 209.99912 * 21 19 17 24 24 H 1.48504 * 109.47328 * 329.99553 * 21 19 17 25 25 C 1.53008 * 117.49400 * 271.90124 * 16 15 12 26 26 C 1.53002 * 117.49702 * 203.24561 * 16 15 12 27 27 H 1.09000 * 109.47334 * 305.21514 * 1 2 3 28 28 H 1.09002 * 109.46901 * 65.21493 * 1 2 3 29 29 H 1.09000 * 109.46804 * 185.21157 * 1 2 3 30 30 H 0.96700 * 117.00110 * 180.02562 * 6 4 2 31 31 H 1.09001 * 112.84932 * 344.84327 * 8 7 2 32 32 H 1.09002 * 113.61633 * 334.56826 * 9 8 7 33 33 H 1.09005 * 113.61721 * 105.47201 * 9 8 7 34 34 H 1.09001 * 113.61853 * 270.88911 * 10 9 8 35 35 H 1.09000 * 113.61781 * 139.98173 * 10 9 8 36 36 H 1.09002 * 113.61118 * 220.02124 * 11 10 9 37 37 H 1.08997 * 113.69374 * 89.12990 * 11 10 9 38 38 H 1.09005 * 109.46582 * 302.61788 * 15 12 7 39 39 H 1.08999 * 109.47360 * 62.61194 * 15 12 7 40 40 H 0.96998 * 120.00474 * 185.00505 * 20 19 17 41 41 H 1.08994 * 117.49751 * 359.97438 * 25 16 15 42 42 H 1.09002 * 117.49464 * 145.02038 * 25 16 15 43 43 H 1.09004 * 117.49476 * 214.97760 * 26 16 15 44 44 H 1.08997 * 117.50020 * 359.97254 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 8 2.3227 -1.8819 1.1755 6 8 2.1573 -0.0415 2.3876 7 7 2.0184 -0.6906 -1.1962 8 6 1.5782 -2.0580 -1.4835 9 6 2.6507 -2.9187 -2.1717 10 6 1.5199 -3.4928 -3.0413 11 6 0.7595 -2.1820 -2.7794 12 16 3.0681 0.0745 -2.2233 13 8 2.8458 -0.5498 -3.4804 14 8 2.7989 1.4568 -2.0340 15 6 4.7133 -0.3468 -1.5857 16 6 5.7810 0.3619 -2.4213 17 6 5.6694 1.8636 -2.4804 18 1 5.0608 2.3304 -3.2407 19 6 6.3444 2.6416 -1.5638 20 7 7.1485 2.0784 -0.6887 21 14 6.1165 4.4956 -1.5647 22 1 4.9889 4.8563 -0.6683 23 1 7.3605 5.1475 -1.0821 24 1 5.8190 4.9571 -2.9445 25 6 6.2936 -0.3581 -3.6703 26 6 7.1863 -0.2431 -2.4321 27 1 -0.3634 0.5926 0.8396 28 1 -0.3633 0.4308 -0.9330 29 1 -0.3633 -1.0234 0.0933 30 1 2.4839 -0.5394 3.1495 31 1 1.1126 -2.5421 -0.6250 32 1 3.3820 -2.3379 -2.7339 33 1 3.1102 -3.6543 -1.5114 34 1 1.0391 -4.3703 -2.6090 35 1 1.8003 -3.6337 -4.0852 36 1 -0.3080 -2.3230 -2.6097 37 1 0.9726 -1.3991 -3.5072 38 1 4.7931 -0.0266 -0.5468 39 1 4.8611 -1.4251 -1.6458 40 1 7.5668 2.6159 0.0019 41 1 5.8704 -1.3368 -3.8963 42 1 6.5504 0.2545 -4.5345 43 1 8.0301 0.4452 -2.4823 44 1 7.3502 -1.1457 -1.8436 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589479727.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:45 Heat of formation + Delta-G solvation = -104.262429 kcal Electronic energy + Delta-G solvation = -29191.828006 eV Core-core repulsion = 25238.627271 eV Total energy + Delta-G solvation = -3953.200735 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 3.28 seconds Orbital eigenvalues (eV) -40.47700 -38.96453 -36.78332 -36.59649 -36.04139 -35.19213 -34.84573 -32.01570 -30.22341 -28.34395 -25.72082 -25.47379 -25.23768 -24.12555 -21.24501 -21.15069 -20.19026 -19.34799 -18.32880 -18.09611 -17.06369 -16.63652 -16.50192 -15.93197 -15.60303 -15.10450 -14.95004 -14.69545 -14.43045 -13.85306 -13.57717 -13.53845 -13.16013 -13.04268 -12.44838 -12.29614 -12.27197 -12.09015 -11.83783 -11.77220 -11.65199 -11.45419 -11.21430 -11.15360 -11.02087 -10.88425 -10.78343 -10.54616 -10.53516 -10.43943 -10.35256 -10.07185 -9.93703 -9.64382 -9.10566 -8.91316 -8.48358 -8.08617 -6.13438 -4.25607 0.89117 2.14706 2.85520 3.25612 3.32010 3.37332 3.43314 4.38459 4.45482 4.55292 4.67090 4.81318 4.86031 4.98840 5.04661 5.08140 5.12664 5.14001 5.19405 5.33851 5.54373 5.62615 5.74211 5.82487 5.83815 5.94449 6.01236 6.02268 6.13118 6.17299 6.26771 6.35324 6.40176 6.46808 6.58589 6.60316 6.71909 6.85305 7.00576 7.21483 7.51748 7.79533 7.87381 8.18281 8.80946 9.46210 10.93266 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012727 B = 0.005991 C = 0.005031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2199.530008 B = 4672.576514 C = 5564.553546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.153 3.847 3 H 0.139 0.861 4 C 0.467 3.533 5 O -0.504 6.504 6 O -0.513 6.513 7 N -0.983 5.983 8 C 0.141 3.859 9 C -0.173 4.173 10 C -0.129 4.129 11 C -0.163 4.163 12 S 2.606 3.394 13 O -0.958 6.958 14 O -0.940 6.940 15 C -0.556 4.556 16 C 0.034 3.966 17 C -0.513 4.513 18 H 0.069 0.931 19 C 0.081 3.919 20 N -0.875 5.875 21 Si 0.891 3.109 22 H -0.273 1.273 23 H -0.286 1.286 24 H -0.269 1.269 25 C -0.212 4.212 26 C -0.126 4.126 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.408 0.592 31 H 0.114 0.886 32 H 0.098 0.902 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.062 0.938 37 H 0.109 0.891 38 H 0.121 0.879 39 H 0.103 0.897 40 H 0.262 0.738 41 H 0.071 0.929 42 H 0.086 0.914 43 H 0.094 0.906 44 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.947 -8.295 3.744 15.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.044 3.956 3 H 0.157 0.843 4 C 0.306 3.694 5 O -0.390 6.390 6 O -0.324 6.324 7 N -0.816 5.816 8 C 0.035 3.965 9 C -0.212 4.212 10 C -0.167 4.167 11 C -0.202 4.202 12 S 2.705 3.295 13 O -0.949 6.949 14 O -0.930 6.930 15 C -0.690 4.690 16 C 0.031 3.969 17 C -0.550 4.550 18 H 0.087 0.913 19 C -0.124 4.124 20 N -0.511 5.511 21 Si 0.718 3.282 22 H -0.199 1.199 23 H -0.212 1.212 24 H -0.194 1.194 25 C -0.249 4.249 26 C -0.165 4.165 27 H 0.096 0.904 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.267 0.733 31 H 0.132 0.868 32 H 0.116 0.884 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.081 0.919 37 H 0.127 0.873 38 H 0.139 0.861 39 H 0.121 0.879 40 H 0.072 0.928 41 H 0.089 0.911 42 H 0.105 0.895 43 H 0.113 0.887 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.136 -7.814 2.787 14.700 hybrid contribution 0.716 0.126 1.416 1.591 sum -11.419 -7.688 4.203 14.393 Atomic orbital electron populations 1.22017 0.91103 1.03226 1.04309 1.20339 0.97124 0.97611 0.80495 0.84341 1.24209 0.74195 0.86115 0.84857 1.90675 1.45999 1.17445 1.84926 1.84572 1.79133 1.47792 1.20900 1.58171 1.62135 1.25251 1.36019 1.22371 0.96585 0.80485 0.97018 1.23729 0.98206 1.00175 0.99047 1.22484 0.97051 0.96632 1.00508 1.23775 0.98491 0.99431 0.98498 1.05468 0.76203 0.73708 0.74150 1.93473 1.84620 1.77102 1.39678 1.93540 1.83576 1.30652 1.85231 1.30110 1.19615 1.07389 1.11837 1.18325 0.91671 0.93353 0.93514 1.20546 1.30317 0.87709 1.16415 0.91261 1.24943 0.93217 0.98974 0.95223 1.70028 1.28340 1.36349 1.16363 0.86586 0.77573 0.84950 0.79126 1.19877 1.21237 1.19381 1.23241 1.07758 1.00468 0.93447 1.22478 0.95732 1.00240 0.98074 0.90439 0.89835 0.91634 0.73284 0.86845 0.88424 0.90794 0.90564 0.90656 0.91880 0.87282 0.86050 0.87897 0.92785 0.91058 0.89530 0.88715 0.91815 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 9.00 37.16 0.33 -1.23 16 2 C 0.15 2.17 3.11 -69.08 -0.22 1.95 16 3 H 0.14 2.08 6.80 -51.93 -0.35 1.73 16 4 C 0.47 6.44 7.51 36.01 0.27 6.71 16 5 O -0.50 -7.80 15.30 -18.75 -0.29 -8.09 16 6 O -0.51 -5.85 13.42 -39.27 -0.53 -6.37 16 7 N -0.98 -15.65 2.71 -100.66 -0.27 -15.92 16 8 C 0.14 2.00 2.70 -67.12 -0.18 1.82 16 9 C -0.17 -2.52 6.86 -25.93 -0.18 -2.70 16 10 C -0.13 -1.60 8.08 -25.92 -0.21 -1.81 16 11 C -0.16 -2.17 7.43 -25.92 -0.19 -2.37 16 12 S 2.61 52.32 4.46 -107.50 -0.48 51.84 16 13 O -0.96 -19.69 12.72 -57.54 -0.73 -20.42 16 14 O -0.94 -21.63 15.42 -57.54 -0.89 -22.52 16 15 C -0.56 -11.88 5.85 37.15 0.22 -11.66 16 16 C 0.03 0.83 1.63 -155.66 -0.25 0.57 16 17 C -0.51 -14.01 7.39 -34.44 -0.25 -14.27 16 18 H 0.07 1.94 7.82 -52.49 -0.41 1.53 16 19 C 0.08 2.22 5.41 -17.82 -0.10 2.12 16 20 N -0.88 -24.15 12.08 55.43 0.67 -23.48 16 21 Si 0.89 21.49 29.54 -169.99 -5.02 16.47 16 22 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 23 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 24 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 25 C -0.21 -4.68 9.94 -26.69 -0.27 -4.95 16 26 C -0.13 -2.95 8.92 -26.69 -0.24 -3.18 16 27 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.06 0.63 7.43 -51.93 -0.39 0.24 16 30 H 0.41 2.88 9.10 45.56 0.41 3.29 16 31 H 0.11 1.48 6.38 -51.93 -0.33 1.15 16 32 H 0.10 1.62 4.21 -51.93 -0.22 1.40 16 33 H 0.07 1.00 8.14 -51.93 -0.42 0.57 16 34 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.11 1.71 5.92 -51.93 -0.31 1.40 16 38 H 0.12 2.67 8.14 -51.92 -0.42 2.25 16 39 H 0.10 1.94 6.80 -51.92 -0.35 1.59 16 40 H 0.26 6.90 8.32 -40.82 -0.34 6.56 16 41 H 0.07 1.42 8.14 -51.93 -0.42 0.99 16 42 H 0.09 1.89 8.14 -51.93 -0.42 1.47 16 43 H 0.09 2.37 7.78 -51.93 -0.40 1.97 16 44 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 LS Contribution 362.81 15.07 5.47 5.47 Total: -1.00 -32.57 362.81 -9.04 -41.62 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -5.71 Total: 10.40 kcal Atomic # 6 Polarization: -27.73 SS G_CDS: -1.26 Total: -28.99 kcal Atomic # 7 Polarization: -39.80 SS G_CDS: 0.40 Total: -39.40 kcal Atomic # 8 Polarization: -54.97 SS G_CDS: -2.43 Total: -57.40 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.02 Total: 16.47 kcal Atomic # 16 Polarization: 52.32 SS G_CDS: -0.48 Total: 51.84 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.57 -9.04 -41.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589479727.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.647 kcal (2) G-P(sol) polarization free energy of solvation -32.572 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.262 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.28 seconds