Wall clock time and date at job start Tue Mar 31 2020 18:05:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47775 * 2 1 4 4 C 1.50704 * 109.46800 * 240.00627 * 2 1 3 5 5 O 1.20830 * 119.99992 * 229.04548 * 4 2 1 6 6 O 1.34233 * 120.00152 * 49.04654 * 4 2 1 7 7 N 1.46500 * 109.47520 * 120.00971 * 2 1 3 8 8 C 1.46497 * 119.99808 * 45.03286 * 7 2 1 9 9 C 1.53784 * 113.61340 * 172.53831 * 8 7 2 10 10 C 1.53787 * 87.08191 * 220.02027 * 9 8 7 11 11 C 1.53788 * 87.08172 * 25.43127 * 10 9 8 12 12 S 1.65597 * 119.99974 * 225.03775 * 7 2 1 13 13 O 1.42108 * 104.27808 * 153.92375 * 12 7 2 14 14 O 1.42104 * 104.27748 * 26.07003 * 12 7 2 15 15 C 1.81398 * 104.45173 * 269.99543 * 12 7 2 16 16 C 1.52997 * 109.47146 * 174.04557 * 15 12 7 17 17 C 1.50696 * 115.55107 * 64.83028 * 16 15 12 18 18 H 1.08006 * 119.99961 * 269.92523 * 17 16 15 19 19 C 1.37875 * 119.99954 * 89.93512 * 17 16 15 20 20 N 1.31512 * 119.99825 * 353.05638 * 19 17 16 21 21 Si 1.86799 * 119.99897 * 173.06547 * 19 17 16 22 22 H 1.48501 * 109.47312 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47293 * 119.99595 * 21 19 17 24 24 H 1.48501 * 109.47238 * 239.99287 * 21 19 17 25 25 C 1.53002 * 117.49852 * 279.16003 * 16 15 12 26 26 C 1.53002 * 117.49649 * 210.50360 * 16 15 12 27 27 H 1.08999 * 109.46769 * 302.54588 * 1 2 3 28 28 H 1.09006 * 109.47511 * 62.54438 * 1 2 3 29 29 H 1.09005 * 109.47610 * 182.54791 * 1 2 3 30 30 H 0.96694 * 117.00038 * 179.97438 * 6 4 2 31 31 H 1.08999 * 112.85275 * 303.84395 * 8 7 2 32 32 H 1.09000 * 113.61404 * 334.56514 * 9 8 7 33 33 H 1.08994 * 113.61637 * 105.47142 * 9 8 7 34 34 H 1.08996 * 113.61119 * 270.88565 * 10 9 8 35 35 H 1.09000 * 113.61697 * 139.97501 * 10 9 8 36 36 H 1.08994 * 113.61474 * 220.02491 * 11 10 9 37 37 H 1.09003 * 113.68890 * 89.12551 * 11 10 9 38 38 H 1.08999 * 109.46831 * 294.04651 * 15 12 7 39 39 H 1.08995 * 109.46869 * 54.04309 * 15 12 7 40 40 H 0.97000 * 119.99446 * 185.01331 * 20 19 17 41 41 H 1.09008 * 117.49626 * 0.02562 * 25 16 15 42 42 H 1.08996 * 117.50339 * 145.02204 * 25 16 15 43 43 H 1.09003 * 117.49479 * 214.97541 * 26 16 15 44 44 H 1.09000 * 117.50044 * 359.97298 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 8 2.8802 -1.5652 -1.1309 6 8 1.5375 -0.3932 -2.4375 7 7 2.0184 -0.6908 1.1960 8 6 1.4172 -1.9630 1.6039 9 6 2.1554 -2.6486 2.7658 10 6 1.9177 -3.9774 2.0291 11 6 1.8463 -3.1547 0.7317 12 16 3.2498 -0.0335 2.0869 13 8 3.0517 -0.5524 3.3950 14 8 3.1616 1.3615 1.8311 15 6 4.7583 -0.7216 1.3509 16 6 5.9833 -0.0710 1.9965 17 6 6.1737 -0.3570 3.4638 18 1 5.7307 0.2942 4.2028 19 6 6.9137 -1.4498 3.8627 20 7 7.3380 -2.3178 2.9705 21 14 7.3133 -1.6975 5.6706 22 1 6.7251 -0.5886 6.4641 23 1 6.7463 -2.9907 6.1303 24 1 8.7868 -1.7099 5.8546 25 6 6.4018 1.3092 1.4857 26 6 7.2401 0.0770 1.1366 27 1 -0.3633 0.5529 0.8663 28 1 -0.3634 0.4738 -0.9119 29 1 -0.3634 -1.0267 0.0457 30 1 1.8909 -0.8757 -3.1973 31 1 0.3392 -1.8943 1.7496 32 1 3.2071 -2.3719 2.8388 33 1 1.6309 -2.5778 3.7187 34 1 0.9766 -4.4602 2.2922 35 1 2.7690 -4.6570 2.0688 36 1 1.0723 -3.4924 0.0426 37 1 2.8130 -3.0158 0.2475 38 1 4.7868 -1.7979 1.5203 39 1 4.7632 -0.5222 0.2794 40 1 7.7954 -3.1237 3.2573 41 1 5.8041 1.7539 0.6899 42 1 6.8152 2.0102 2.2107 43 1 8.2048 -0.0322 1.6323 44 1 7.1944 -0.2896 0.1111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589479728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:57 Heat of formation + Delta-G solvation = -97.667380 kcal Electronic energy + Delta-G solvation = -29368.857611 eV Core-core repulsion = 25415.942859 eV Total energy + Delta-G solvation = -3952.914752 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.53217 -38.84500 -36.73901 -36.60758 -36.04308 -35.17794 -34.94303 -32.01018 -30.20884 -28.17139 -25.67321 -25.43209 -25.31621 -24.00193 -21.19954 -21.12112 -20.15920 -19.17985 -18.30630 -18.03880 -17.35305 -16.83098 -16.34301 -15.90625 -15.50339 -15.10255 -14.92975 -14.69364 -14.41220 -13.87945 -13.67004 -13.51068 -13.10020 -12.88602 -12.51035 -12.41259 -12.09231 -11.93235 -11.81055 -11.69604 -11.50359 -11.37308 -11.30019 -11.09235 -10.98220 -10.94133 -10.86496 -10.53481 -10.44041 -10.40946 -10.10436 -10.00171 -9.79134 -9.67744 -8.95883 -8.92360 -8.52605 -8.05740 -6.11424 -4.22913 0.94906 2.17224 2.80035 3.28700 3.29049 3.37023 3.44363 4.38081 4.41788 4.55348 4.66746 4.85590 4.90260 4.97102 5.06629 5.13979 5.16760 5.17514 5.23377 5.40548 5.53400 5.67962 5.76256 5.86707 5.93414 5.96084 6.01308 6.17042 6.19100 6.29752 6.36712 6.42603 6.48504 6.56575 6.63282 6.67145 6.74954 6.93042 7.04538 7.28234 7.44769 7.81592 7.87430 8.22346 8.82870 9.47941 10.95675 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.005623 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.134463 B = 4978.636626 C = 5575.547052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.157 3.843 3 H 0.140 0.860 4 C 0.456 3.544 5 O -0.490 6.490 6 O -0.517 6.517 7 N -0.982 5.982 8 C 0.124 3.876 9 C -0.139 4.139 10 C -0.151 4.151 11 C -0.155 4.155 12 S 2.599 3.401 13 O -0.936 6.936 14 O -0.974 6.974 15 C -0.543 4.543 16 C 0.040 3.960 17 C -0.516 4.516 18 H 0.068 0.932 19 C 0.082 3.918 20 N -0.871 5.871 21 Si 0.890 3.110 22 H -0.268 1.268 23 H -0.280 1.280 24 H -0.283 1.283 25 C -0.211 4.211 26 C -0.134 4.134 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.066 0.934 30 H 0.407 0.593 31 H 0.099 0.901 32 H 0.108 0.892 33 H 0.083 0.917 34 H 0.076 0.924 35 H 0.074 0.926 36 H 0.058 0.942 37 H 0.111 0.889 38 H 0.133 0.867 39 H 0.099 0.901 40 H 0.262 0.738 41 H 0.072 0.928 42 H 0.086 0.914 43 H 0.088 0.912 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.563 -0.011 -9.277 16.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.048 3.952 3 H 0.157 0.843 4 C 0.295 3.705 5 O -0.376 6.376 6 O -0.329 6.329 7 N -0.815 5.815 8 C 0.018 3.982 9 C -0.177 4.177 10 C -0.189 4.189 11 C -0.194 4.194 12 S 2.699 3.301 13 O -0.926 6.926 14 O -0.965 6.965 15 C -0.676 4.676 16 C 0.037 3.963 17 C -0.553 4.553 18 H 0.087 0.913 19 C -0.123 4.123 20 N -0.507 5.507 21 Si 0.717 3.283 22 H -0.192 1.192 23 H -0.206 1.206 24 H -0.209 1.209 25 C -0.248 4.248 26 C -0.173 4.173 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.085 0.915 30 H 0.266 0.734 31 H 0.116 0.884 32 H 0.126 0.874 33 H 0.102 0.898 34 H 0.094 0.906 35 H 0.092 0.908 36 H 0.077 0.923 37 H 0.129 0.871 38 H 0.151 0.849 39 H 0.118 0.882 40 H 0.072 0.928 41 H 0.090 0.910 42 H 0.105 0.895 43 H 0.106 0.894 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -13.501 0.424 -8.185 15.794 hybrid contribution 0.815 -1.161 -0.287 1.448 sum -12.686 -0.738 -8.472 15.273 Atomic orbital electron populations 1.21993 0.91420 1.03497 1.03968 1.20303 0.97469 0.96872 0.80593 0.84305 1.24343 0.79700 0.81446 0.84999 1.90702 1.30098 1.30458 1.86372 1.84526 1.65835 1.64920 1.17576 1.58029 1.52617 1.33718 1.37127 1.22511 0.98079 0.80641 0.96946 1.23586 1.03459 0.93726 0.96904 1.22864 1.01917 0.97224 0.96911 1.23651 1.03711 0.95532 0.96471 1.05587 0.75419 0.74071 0.74985 1.93590 1.84116 1.79545 1.35359 1.93462 1.86389 1.30630 1.85993 1.29996 1.15975 1.12921 1.08742 1.18343 0.90511 0.92853 0.94584 1.20550 1.33940 1.12228 0.88576 0.91342 1.24950 0.94214 0.95478 0.97665 1.70013 1.37758 1.09680 1.33224 0.86546 0.77974 0.78642 0.85113 1.19196 1.20611 1.20866 1.23228 1.06162 0.92234 1.03224 1.22491 0.96951 0.99717 0.98119 0.90446 0.90100 0.91481 0.73436 0.88359 0.87365 0.89799 0.90577 0.90772 0.92350 0.87132 0.84924 0.88206 0.92794 0.90984 0.89503 0.89360 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 8.68 37.15 0.32 -1.11 16 2 C 0.16 2.03 3.20 -69.08 -0.22 1.81 16 3 H 0.14 1.82 6.73 -51.93 -0.35 1.47 16 4 C 0.46 5.72 7.39 36.01 0.27 5.99 16 5 O -0.49 -7.47 13.13 -18.75 -0.25 -7.72 16 6 O -0.52 -4.72 12.93 -39.27 -0.51 -5.22 16 7 N -0.98 -15.47 2.50 -100.66 -0.25 -15.72 16 8 C 0.12 1.78 3.57 -67.11 -0.24 1.54 16 9 C -0.14 -2.30 5.52 -25.91 -0.14 -2.44 16 10 C -0.15 -2.08 8.08 -25.91 -0.21 -2.29 16 11 C -0.15 -2.15 6.33 -25.91 -0.16 -2.31 16 12 S 2.60 53.18 4.56 -107.50 -0.49 52.69 16 13 O -0.94 -21.37 13.58 -57.54 -0.78 -22.15 16 14 O -0.97 -21.09 16.49 -57.54 -0.95 -22.04 16 15 C -0.54 -11.90 5.88 37.16 0.22 -11.68 16 16 C 0.04 0.98 1.42 -155.66 -0.22 0.76 16 17 C -0.52 -14.14 8.18 -34.44 -0.28 -14.42 16 18 H 0.07 1.92 7.82 -52.48 -0.41 1.51 16 19 C 0.08 2.24 5.36 -17.82 -0.10 2.15 16 20 N -0.87 -24.12 12.72 55.43 0.71 -23.42 16 21 Si 0.89 21.39 29.55 -169.99 -5.02 16.37 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 25 C -0.21 -4.75 9.96 -26.69 -0.27 -5.02 16 26 C -0.13 -3.14 9.16 -26.69 -0.24 -3.39 16 27 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.08 0.63 7.86 -51.93 -0.41 0.22 16 29 H 0.07 0.59 6.84 -51.93 -0.35 0.24 16 30 H 0.41 2.13 9.10 45.56 0.41 2.55 16 31 H 0.10 1.16 7.03 -51.93 -0.37 0.79 16 32 H 0.11 2.17 4.76 -51.93 -0.25 1.92 16 33 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 34 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 35 H 0.07 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.11 1.79 5.86 -51.93 -0.30 1.49 16 38 H 0.13 3.05 7.34 -51.92 -0.38 2.67 16 39 H 0.10 2.00 7.47 -51.93 -0.39 1.62 16 40 H 0.26 6.91 8.32 -40.82 -0.34 6.57 16 41 H 0.07 1.48 8.14 -51.92 -0.42 1.06 16 42 H 0.09 1.92 8.14 -51.93 -0.42 1.50 16 43 H 0.09 2.19 8.14 -51.93 -0.42 1.77 16 44 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 361.91 15.07 5.45 5.45 Total: -1.00 -32.66 361.91 -9.10 -41.76 By element: Atomic # 1 Polarization: 16.14 SS G_CDS: -5.73 Total: 10.41 kcal Atomic # 6 Polarization: -29.14 SS G_CDS: -1.28 Total: -30.42 kcal Atomic # 7 Polarization: -39.59 SS G_CDS: 0.45 Total: -39.13 kcal Atomic # 8 Polarization: -54.65 SS G_CDS: -2.48 Total: -57.13 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 53.18 SS G_CDS: -0.49 Total: 52.69 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.66 -9.10 -41.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589479728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.904 kcal (2) G-P(sol) polarization free energy of solvation -32.662 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.566 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.101 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.763 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds