Wall clock time and date at job start Tue Mar 31 2020 18:05:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08996 * 109.47775 * 2 1 4 4 C 1.50704 * 109.46800 * 240.00627 * 2 1 3 5 5 O 1.20830 * 119.99992 * 229.04548 * 4 2 1 6 6 O 1.34233 * 120.00152 * 49.04654 * 4 2 1 7 7 N 1.46500 * 109.47520 * 120.00971 * 2 1 3 8 8 C 1.46497 * 119.99808 * 45.03286 * 7 2 1 9 9 C 1.53784 * 113.61340 * 172.53831 * 8 7 2 10 10 C 1.53787 * 87.08191 * 220.02027 * 9 8 7 11 11 C 1.53788 * 87.08172 * 25.43127 * 10 9 8 12 12 S 1.65597 * 119.99974 * 225.03775 * 7 2 1 13 13 O 1.42108 * 104.27808 * 153.92375 * 12 7 2 14 14 O 1.42104 * 104.27748 * 26.07003 * 12 7 2 15 15 C 1.81398 * 104.45173 * 269.99543 * 12 7 2 16 16 C 1.52997 * 109.47146 * 174.04557 * 15 12 7 17 17 C 1.50696 * 115.55107 * 64.83028 * 16 15 12 18 18 H 1.08006 * 119.99961 * 269.92523 * 17 16 15 19 19 C 1.37875 * 119.99954 * 89.93512 * 17 16 15 20 20 N 1.31512 * 119.99825 * 353.05638 * 19 17 16 21 21 Si 1.86799 * 119.99897 * 173.06547 * 19 17 16 22 22 H 1.48501 * 109.47312 * 359.97438 * 21 19 17 23 23 H 1.48505 * 109.47293 * 119.99595 * 21 19 17 24 24 H 1.48501 * 109.47238 * 239.99287 * 21 19 17 25 25 C 1.53002 * 117.49852 * 279.16003 * 16 15 12 26 26 C 1.53002 * 117.49649 * 210.50360 * 16 15 12 27 27 H 1.08999 * 109.46769 * 302.54588 * 1 2 3 28 28 H 1.09006 * 109.47511 * 62.54438 * 1 2 3 29 29 H 1.09005 * 109.47610 * 182.54791 * 1 2 3 30 30 H 0.96694 * 117.00038 * 179.97438 * 6 4 2 31 31 H 1.08999 * 112.85275 * 303.84395 * 8 7 2 32 32 H 1.09000 * 113.61404 * 334.56514 * 9 8 7 33 33 H 1.08994 * 113.61637 * 105.47142 * 9 8 7 34 34 H 1.08996 * 113.61119 * 270.88565 * 10 9 8 35 35 H 1.09000 * 113.61697 * 139.97501 * 10 9 8 36 36 H 1.08994 * 113.61474 * 220.02491 * 11 10 9 37 37 H 1.09003 * 113.68890 * 89.12551 * 11 10 9 38 38 H 1.08999 * 109.46831 * 294.04651 * 15 12 7 39 39 H 1.08995 * 109.46869 * 54.04309 * 15 12 7 40 40 H 0.97000 * 119.99446 * 185.01331 * 20 19 17 41 41 H 1.09008 * 117.49626 * 0.02562 * 25 16 15 42 42 H 1.08996 * 117.50339 * 145.02204 * 25 16 15 43 43 H 1.09003 * 117.49479 * 214.97541 * 26 16 15 44 44 H 1.09000 * 117.50044 * 359.97298 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0322 -0.7103 -1.2306 5 8 2.8802 -1.5652 -1.1309 6 8 1.5375 -0.3932 -2.4375 7 7 2.0184 -0.6908 1.1960 8 6 1.4172 -1.9630 1.6039 9 6 2.1554 -2.6486 2.7658 10 6 1.9177 -3.9774 2.0291 11 6 1.8463 -3.1547 0.7317 12 16 3.2498 -0.0335 2.0869 13 8 3.0517 -0.5524 3.3950 14 8 3.1616 1.3615 1.8311 15 6 4.7583 -0.7216 1.3509 16 6 5.9833 -0.0710 1.9965 17 6 6.1737 -0.3570 3.4638 18 1 5.7307 0.2942 4.2028 19 6 6.9137 -1.4498 3.8627 20 7 7.3380 -2.3178 2.9705 21 14 7.3133 -1.6975 5.6706 22 1 6.7251 -0.5886 6.4641 23 1 6.7463 -2.9907 6.1303 24 1 8.7868 -1.7099 5.8546 25 6 6.4018 1.3092 1.4857 26 6 7.2401 0.0770 1.1366 27 1 -0.3633 0.5529 0.8663 28 1 -0.3634 0.4738 -0.9119 29 1 -0.3634 -1.0267 0.0457 30 1 1.8909 -0.8757 -3.1973 31 1 0.3392 -1.8943 1.7496 32 1 3.2071 -2.3719 2.8388 33 1 1.6309 -2.5778 3.7187 34 1 0.9766 -4.4602 2.2922 35 1 2.7690 -4.6570 2.0688 36 1 1.0723 -3.4924 0.0426 37 1 2.8130 -3.0158 0.2475 38 1 4.7868 -1.7979 1.5203 39 1 4.7632 -0.5222 0.2794 40 1 7.7954 -3.1237 3.2573 41 1 5.8041 1.7539 0.6899 42 1 6.8152 2.0102 2.2107 43 1 8.2048 -0.0322 1.6323 44 1 7.1944 -0.2896 0.1111 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589479728.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:05:52 Heat of formation + Delta-G solvation = -119.980691 kcal Electronic energy + Delta-G solvation = -29369.825189 eV Core-core repulsion = 25415.942859 eV Total energy + Delta-G solvation = -3953.882330 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.90 seconds Orbital eigenvalues (eV) -41.52107 -39.98727 -38.61700 -38.13948 -37.00689 -36.84527 -36.09269 -34.09501 -31.24778 -29.92956 -27.53477 -26.59046 -26.52984 -25.04791 -23.04294 -22.19552 -21.64617 -20.81374 -19.74764 -19.02385 -18.64127 -18.15651 -18.04430 -17.08166 -16.86435 -16.74486 -16.38737 -16.18525 -15.86329 -15.64497 -14.99748 -14.74855 -14.47324 -13.93037 -13.86436 -13.78865 -13.52876 -13.45371 -13.24332 -13.13424 -12.91090 -12.88125 -12.74201 -12.53267 -12.50360 -12.43808 -12.33812 -12.21491 -12.04750 -11.80005 -11.64150 -11.53551 -11.13223 -11.04879 -10.92604 -10.56015 -10.22650 -9.83919 -8.20201 -6.36544 -0.63433 1.21917 1.35394 1.38344 1.50188 1.63077 2.19418 2.37632 2.89426 3.05185 3.21392 3.30903 3.34908 3.73612 3.79023 3.95626 4.00003 4.02376 4.08961 4.14879 4.30429 4.43099 4.49266 4.58306 4.63363 4.79121 4.85269 4.88571 4.91332 4.92544 5.02553 5.08985 5.15763 5.20525 5.26799 5.30354 5.39576 5.47367 5.54550 5.67877 5.69039 5.81327 6.19133 6.70323 7.05836 7.35841 8.86764 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014921 B = 0.005623 C = 0.005021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1876.134463 B = 4978.636626 C = 5575.547052 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.143 3.857 3 H 0.136 0.864 4 C 0.464 3.536 5 O -0.523 6.523 6 O -0.503 6.503 7 N -0.975 5.975 8 C 0.128 3.872 9 C -0.159 4.159 10 C -0.140 4.140 11 C -0.148 4.148 12 S 2.619 3.381 13 O -0.966 6.966 14 O -0.989 6.989 15 C -0.542 4.542 16 C 0.010 3.990 17 C -0.532 4.532 18 H 0.051 0.949 19 C 0.042 3.958 20 N -0.893 5.893 21 Si 0.938 3.062 22 H -0.270 1.270 23 H -0.275 1.275 24 H -0.272 1.272 25 C -0.197 4.197 26 C -0.135 4.135 27 H 0.081 0.919 28 H 0.103 0.897 29 H 0.079 0.921 30 H 0.427 0.573 31 H 0.137 0.863 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.109 0.891 35 H 0.060 0.940 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.112 0.888 39 H 0.113 0.887 40 H 0.265 0.735 41 H 0.094 0.906 42 H 0.087 0.913 43 H 0.069 0.931 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.998 -0.059 -10.592 19.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.035 3.965 3 H 0.154 0.846 4 C 0.304 3.696 5 O -0.411 6.411 6 O -0.316 6.316 7 N -0.811 5.811 8 C 0.023 3.977 9 C -0.197 4.197 10 C -0.178 4.178 11 C -0.187 4.187 12 S 2.718 3.282 13 O -0.956 6.956 14 O -0.979 6.979 15 C -0.674 4.674 16 C 0.008 3.992 17 C -0.569 4.569 18 H 0.069 0.931 19 C -0.161 4.161 20 N -0.529 5.529 21 Si 0.763 3.237 22 H -0.195 1.195 23 H -0.200 1.200 24 H -0.197 1.197 25 C -0.234 4.234 26 C -0.174 4.174 27 H 0.100 0.900 28 H 0.122 0.878 29 H 0.098 0.902 30 H 0.289 0.711 31 H 0.154 0.846 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.079 0.921 36 H 0.104 0.896 37 H 0.103 0.897 38 H 0.131 0.869 39 H 0.131 0.869 40 H 0.074 0.926 41 H 0.113 0.887 42 H 0.105 0.895 43 H 0.087 0.913 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -15.913 0.388 -9.533 18.554 hybrid contribution 1.506 -1.123 0.032 1.879 sum -14.406 -0.735 -9.501 17.273 Atomic orbital electron populations 1.22046 0.88191 1.04720 1.05408 1.20669 0.99935 0.96307 0.79596 0.84627 1.24135 0.79016 0.80684 0.85790 1.90724 1.31491 1.31970 1.86950 1.84463 1.65172 1.64731 1.17206 1.57619 1.50911 1.34395 1.38155 1.22778 0.99456 0.79829 0.95624 1.23554 1.01338 0.96636 0.98208 1.22885 1.03021 0.95819 0.96117 1.23523 1.03253 0.95195 0.96681 1.04682 0.75342 0.73552 0.74631 1.93558 1.84498 1.80005 1.37560 1.93431 1.86658 1.31545 1.86277 1.29898 1.16584 1.11469 1.09436 1.18475 0.92120 0.94817 0.93809 1.20697 1.34075 1.12188 0.89960 0.93080 1.25554 0.94200 0.95329 1.01008 1.70079 1.38304 1.09974 1.34535 0.85809 0.78226 0.78486 0.81188 1.19467 1.20047 1.19735 1.23270 1.05302 0.91447 1.03372 1.22412 0.95853 1.00722 0.98423 0.90009 0.87809 0.90235 0.71137 0.84553 0.91488 0.89968 0.87221 0.92073 0.89606 0.89741 0.86944 0.86903 0.92618 0.88742 0.89483 0.91268 0.90287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.20 8.68 71.98 0.63 -1.57 16 2 C 0.14 3.37 3.20 44.24 0.14 3.51 16 3 H 0.14 3.30 6.73 -2.39 -0.02 3.28 16 4 C 0.46 10.51 7.39 71.24 0.53 11.04 16 5 O -0.52 -15.26 13.13 21.95 0.29 -14.97 16 6 O -0.50 -7.45 12.93 -51.45 -0.67 -8.11 16 7 N -0.97 -29.56 2.50 -472.37 -1.18 -30.74 16 8 C 0.13 3.43 3.57 45.52 0.16 3.59 16 9 C -0.16 -5.28 5.52 31.12 0.17 -5.11 16 10 C -0.14 -3.68 8.08 31.12 0.25 -3.43 16 11 C -0.15 -3.83 6.33 31.13 0.20 -3.63 16 12 S 2.62 108.40 4.56 -56.49 -0.26 108.14 16 13 O -0.97 -45.50 13.58 -127.65 -1.73 -47.23 16 14 O -0.99 -42.63 16.49 -127.65 -2.11 -44.73 16 15 C -0.54 -24.42 5.88 71.98 0.42 -24.00 16 16 C 0.01 0.51 1.42 -52.93 -0.08 0.43 16 17 C -0.53 -30.17 8.18 25.60 0.21 -29.96 16 18 H 0.05 2.99 7.82 -2.91 -0.02 2.97 16 19 C 0.04 2.35 5.36 84.65 0.45 2.80 16 20 N -0.89 -50.84 12.72 21.45 0.27 -50.56 16 21 Si 0.94 44.72 29.55 68.60 2.03 46.75 16 22 H -0.27 -12.87 7.11 99.48 0.71 -12.17 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 24 H -0.27 -12.42 7.11 99.48 0.71 -11.71 16 25 C -0.20 -8.88 9.96 30.62 0.30 -8.57 16 26 C -0.14 -6.47 9.16 30.62 0.28 -6.19 16 27 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 28 H 0.10 1.14 7.86 -2.38 -0.02 1.12 16 29 H 0.08 1.02 6.84 -2.38 -0.02 1.01 16 30 H 0.43 3.03 9.10 -74.06 -0.67 2.35 16 31 H 0.14 2.67 7.03 -2.39 -0.02 2.66 16 32 H 0.07 2.82 4.76 -2.39 -0.01 2.81 16 33 H 0.08 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 35 H 0.06 1.74 8.14 -2.39 -0.02 1.73 16 36 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.08 2.72 5.86 -2.39 -0.01 2.71 16 38 H 0.11 5.49 7.34 -2.39 -0.02 5.47 16 39 H 0.11 4.61 7.47 -2.39 -0.02 4.59 16 40 H 0.26 14.27 8.32 -92.71 -0.77 13.50 16 41 H 0.09 3.79 8.14 -2.38 -0.02 3.77 16 42 H 0.09 3.87 8.14 -2.39 -0.02 3.85 16 43 H 0.07 3.53 8.14 -2.39 -0.02 3.51 16 44 H 0.08 3.50 8.14 -2.39 -0.02 3.48 16 Total: -1.00 -72.69 361.91 0.67 -72.02 By element: Atomic # 1 Polarization: 30.19 SS G_CDS: 0.35 Total: 30.54 kcal Atomic # 6 Polarization: -64.77 SS G_CDS: 3.67 Total: -61.09 kcal Atomic # 7 Polarization: -80.40 SS G_CDS: -0.91 Total: -81.31 kcal Atomic # 8 Polarization: -110.83 SS G_CDS: -4.22 Total: -115.05 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Atomic # 16 Polarization: 108.40 SS G_CDS: -0.26 Total: 108.14 kcal Total: -72.69 0.67 -72.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589479728.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.959 kcal (2) G-P(sol) polarization free energy of solvation -72.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.91 seconds