Wall clock time and date at job start Tue Mar 31 2020 17:50:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 5 5 H 1.08001 * 120.00037 * 119.99654 * 4 2 1 6 6 C 1.37875 * 120.00214 * 300.00299 * 4 2 1 7 7 N 1.31516 * 120.00297 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99907 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47496 * 89.99791 * 8 6 4 10 10 H 1.48503 * 109.47098 * 209.99926 * 8 6 4 11 11 H 1.48508 * 109.47255 * 329.99814 * 8 6 4 12 12 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 13 13 O 1.21283 * 119.99803 * 239.99993 * 12 2 1 14 14 N 1.34777 * 119.99675 * 60.27868 * 12 2 1 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 2 16 16 H 1.09001 * 109.47884 * 324.99780 * 15 14 12 17 17 C 1.53001 * 109.47201 * 204.99403 * 15 14 12 18 18 C 1.50702 * 109.46638 * 64.99927 * 17 15 14 19 19 C 1.34001 * 124.92234 * 90.00235 * 18 17 15 20 20 C 1.46784 * 106.18652 * 179.97438 * 19 18 17 21 21 C 1.39404 * 134.36900 * 179.97438 * 20 19 18 22 22 C 1.36733 * 119.71346 * 179.97438 * 21 20 19 23 23 C 1.38741 * 120.42136 * 0.08271 * 22 21 20 24 24 C 1.37853 * 120.68341 * 359.93735 * 23 22 21 25 25 C 1.38937 * 119.81829 * 0.02562 * 24 23 22 26 26 O 1.34451 * 124.92728 * 269.69319 * 18 17 15 27 27 C 1.50707 * 109.47332 * 85.00137 * 15 14 12 28 28 O 1.20821 * 119.99616 * 359.97438 * 27 15 14 29 29 O 1.34228 * 120.00220 * 179.97438 * 27 15 14 30 30 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 31 31 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 32 32 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99846 * 179.97438 * 7 6 4 34 34 H 0.97000 * 119.99894 * 359.71837 * 14 12 2 35 35 H 1.09000 * 109.47404 * 185.00044 * 17 15 14 36 36 H 1.09001 * 109.47466 * 305.00513 * 17 15 14 37 37 H 1.08002 * 126.90630 * 359.96510 * 19 18 17 38 38 H 1.08001 * 120.14126 * 359.97438 * 21 20 19 39 39 H 1.08002 * 119.78948 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.66418 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.08895 * 180.02562 * 24 23 22 42 42 H 0.96696 * 117.00128 * 179.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 2.1371 -0.8593 3.5567 8 14 0.6258 1.2800 2.6540 9 1 -0.8022 0.8748 2.6992 10 1 0.9770 1.9956 3.9069 11 1 0.8491 2.1775 1.4921 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1189 14 7 1.7114 -0.2468 -2.4545 15 6 2.2048 -0.9340 -3.6505 16 1 3.2035 -1.3263 -3.4584 17 6 2.2604 0.0522 -4.8190 18 6 3.2800 1.1223 -4.5248 19 6 4.5774 1.0567 -4.8532 20 6 5.1836 2.3059 -4.3773 21 6 6.4716 2.8384 -4.4090 22 6 6.7105 4.0676 -3.8598 23 6 5.6801 4.7861 -3.2707 24 6 4.4003 4.2755 -3.2296 25 6 4.1359 3.0286 -3.7825 26 8 3.0185 2.2838 -3.9001 27 6 1.2767 -2.0701 -3.9960 28 8 0.3034 -2.2840 -3.3129 29 8 1.5315 -2.8442 -5.0625 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.9031 -0.5276 4.4376 34 1 1.1537 0.5418 -2.5435 35 1 2.5421 -0.4779 -5.7288 36 1 1.2810 0.5110 -4.9542 37 1 5.0768 0.2473 -5.3651 38 1 7.2772 2.2824 -4.8653 39 1 7.7077 4.4815 -3.8840 40 1 5.8826 5.7557 -2.8403 41 1 3.6054 4.8432 -2.7690 42 1 0.9080 -3.5607 -5.2439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592213127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:59 Heat of formation + Delta-G solvation = -91.607584 kcal Electronic energy + Delta-G solvation = -28391.791843 eV Core-core repulsion = 24303.695912 eV Total energy + Delta-G solvation = -4088.095931 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.59680 -40.52333 -38.83157 -38.02626 -36.14299 -35.50129 -33.82381 -33.07817 -31.72788 -30.84726 -30.53596 -28.61200 -25.57206 -25.09111 -23.21268 -23.01839 -21.96450 -21.31880 -20.81453 -19.64821 -18.13353 -17.48384 -17.37561 -16.78378 -16.71522 -16.42826 -15.83004 -15.71550 -15.56370 -15.17398 -14.52714 -14.31554 -14.05661 -13.90736 -13.36277 -13.28933 -13.11553 -13.10413 -12.63937 -12.61001 -12.35837 -12.24513 -12.13636 -11.81616 -11.59605 -11.49305 -11.06570 -10.95774 -10.65977 -10.59453 -10.27107 -10.21655 -9.61122 -9.08137 -8.93155 -8.79905 -8.73418 -8.54761 -8.27714 -6.02314 -4.02411 0.75317 1.24924 2.04905 2.28793 2.50429 2.80019 3.26658 3.33759 3.38636 3.47607 3.60220 3.67004 4.17103 4.40781 4.42646 4.52125 4.67376 4.82091 4.94928 4.97753 5.11666 5.15502 5.26891 5.29606 5.34624 5.38011 5.56000 5.72583 5.83297 6.06138 6.12695 6.17808 6.28643 6.30365 6.35523 6.44460 6.50577 6.51980 6.64558 6.74876 7.06377 7.22030 7.54103 7.86926 7.96955 8.55839 8.97869 9.16500 9.56368 11.10633 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.008636 B = 0.004782 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.281907 B = 5853.725138 C = 8207.773425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.001 4.001 3 H 0.053 0.947 4 C -0.505 4.505 5 H 0.093 0.907 6 C 0.071 3.929 7 N -0.896 5.896 8 Si 0.884 3.116 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.267 1.267 12 C 0.538 3.462 13 O -0.525 6.525 14 N -0.725 5.725 15 C 0.161 3.839 16 H 0.130 0.870 17 C -0.046 4.046 18 C 0.040 3.960 19 C -0.197 4.197 20 C -0.129 4.129 21 C -0.072 4.072 22 C -0.137 4.137 23 C -0.095 4.095 24 C -0.105 4.105 25 C 0.058 3.942 26 O -0.186 6.186 27 C 0.463 3.537 28 O -0.490 6.490 29 O -0.520 6.520 30 H 0.048 0.952 31 H 0.033 0.967 32 H 0.059 0.941 33 H 0.264 0.736 34 H 0.404 0.596 35 H 0.126 0.874 36 H 0.097 0.903 37 H 0.160 0.840 38 H 0.126 0.874 39 H 0.128 0.872 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.555 8.851 -22.773 24.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.022 4.022 3 H 0.071 0.929 4 C -0.543 4.543 5 H 0.111 0.889 6 C -0.131 4.131 7 N -0.534 5.534 8 Si 0.714 3.286 9 H -0.205 1.205 10 H -0.223 1.223 11 H -0.192 1.192 12 C 0.328 3.672 13 O -0.399 6.399 14 N -0.381 5.381 15 C 0.053 3.947 16 H 0.148 0.852 17 C -0.083 4.083 18 C -0.008 4.008 19 C -0.216 4.216 20 C -0.130 4.130 21 C -0.090 4.090 22 C -0.156 4.156 23 C -0.113 4.113 24 C -0.123 4.123 25 C 0.010 3.990 26 O -0.088 6.088 27 C 0.302 3.698 28 O -0.375 6.375 29 O -0.332 6.332 30 H 0.067 0.933 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.074 0.926 34 H 0.239 0.761 35 H 0.144 0.856 36 H 0.116 0.884 37 H 0.178 0.822 38 H 0.144 0.856 39 H 0.146 0.854 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.267 0.733 Dipole moment (debyes) X Y Z Total from point charges 3.819 8.445 -22.067 23.934 hybrid contribution -1.261 0.537 0.121 1.376 sum 2.558 8.982 -21.946 23.850 Atomic orbital electron populations 1.22090 0.97010 1.01770 0.99125 1.19296 0.93404 0.97481 0.92054 0.92911 1.20914 1.32100 1.14073 0.87182 0.88904 1.24960 0.95793 0.96575 0.95725 1.69882 1.45508 1.40162 0.97837 0.86923 0.80781 0.83854 0.77060 1.20476 1.22301 1.19216 1.21396 0.78149 0.83997 0.83681 1.90584 1.37001 1.26042 1.86230 1.46132 1.55947 1.31851 1.04200 1.20287 0.98115 0.89249 0.87062 0.85241 1.20479 0.98308 0.91471 0.98071 1.21833 0.95368 0.86480 0.97084 1.22247 0.93041 0.98704 1.07613 1.19928 0.94847 0.95394 1.02855 1.20280 0.94540 0.95387 0.98766 1.20769 0.99492 0.95137 1.00158 1.20929 0.91431 1.00066 0.98893 1.19991 0.98061 0.92243 1.02035 1.19598 0.84152 0.94207 1.00993 1.83941 1.33755 1.26332 1.64752 1.24089 0.85295 0.83035 0.77421 1.90764 1.28345 1.69183 1.49167 1.84501 1.56924 1.44789 1.46955 0.93320 0.94835 0.92155 0.92581 0.76114 0.85642 0.88434 0.82236 0.85577 0.85437 0.84826 0.84956 0.73255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.57 37.16 0.32 -2.80 16 2 C 0.00 -0.02 2.23 -92.92 -0.21 -0.23 16 3 H 0.05 1.25 7.20 -51.92 -0.37 0.87 16 4 C -0.50 -14.98 8.96 -34.44 -0.31 -15.29 16 5 H 0.09 3.13 7.00 -52.49 -0.37 2.76 16 6 C 0.07 2.10 5.45 -17.82 -0.10 2.00 16 7 N -0.90 -28.19 13.96 55.43 0.77 -27.41 16 8 Si 0.88 21.87 24.37 -169.99 -4.14 17.72 16 9 H -0.28 -6.68 6.87 56.52 0.39 -6.29 16 10 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 11 H -0.27 -6.16 6.53 56.52 0.37 -5.79 16 12 C 0.54 12.13 6.97 -10.98 -0.08 12.05 16 13 O -0.53 -13.73 15.12 5.55 0.08 -13.65 16 14 N -0.73 -12.15 4.22 -54.93 -0.23 -12.38 16 15 C 0.16 2.17 2.47 -69.08 -0.17 2.00 16 16 H 0.13 1.87 7.58 -51.93 -0.39 1.48 16 17 C -0.05 -0.42 5.22 -27.88 -0.15 -0.57 16 18 C 0.04 0.46 6.21 -35.80 -0.22 0.24 16 19 C -0.20 -2.22 11.01 -37.62 -0.41 -2.63 16 20 C -0.13 -1.63 6.40 -105.16 -0.67 -2.30 16 21 C -0.07 -0.76 10.05 -39.69 -0.40 -1.16 16 22 C -0.14 -1.30 9.98 -39.94 -0.40 -1.70 16 23 C -0.10 -0.92 10.01 -39.54 -0.40 -1.32 16 24 C -0.10 -1.21 10.07 -39.46 -0.40 -1.60 16 25 C 0.06 0.78 7.42 -38.47 -0.29 0.49 16 26 O -0.19 -2.51 10.58 3.92 0.04 -2.47 16 27 C 0.46 6.41 7.66 36.01 0.28 6.69 16 28 O -0.49 -8.82 17.08 -18.75 -0.32 -9.14 16 29 O -0.52 -5.02 13.23 -39.25 -0.52 -5.54 16 30 H 0.05 1.09 3.27 -51.93 -0.17 0.92 16 31 H 0.03 0.59 7.57 -51.93 -0.39 0.20 16 32 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 33 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 34 H 0.40 5.89 8.03 -40.82 -0.33 5.56 16 35 H 0.13 0.79 7.99 -51.93 -0.42 0.37 16 36 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 37 H 0.16 1.36 8.06 -52.49 -0.42 0.94 16 38 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 39 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 40 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 42 H 0.41 2.39 9.10 45.56 0.41 2.80 16 LS Contribution 360.38 15.07 5.43 5.43 Total: -1.00 -38.85 360.38 -6.65 -45.50 By element: Atomic # 1 Polarization: 12.22 SS G_CDS: -4.17 Total: 8.06 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -3.60 Total: -6.13 kcal Atomic # 7 Polarization: -40.33 SS G_CDS: 0.54 Total: -39.79 kcal Atomic # 8 Polarization: -30.08 SS G_CDS: -0.71 Total: -30.79 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.14 Total: 17.72 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.85 -6.65 -45.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592213127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.112 kcal (2) G-P(sol) polarization free energy of solvation -38.848 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.648 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.496 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.608 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds