Wall clock time and date at job start Tue Mar 31 2020 17:50:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09009 * 109.47102 * 2 1 4 4 C 1.50703 * 109.47087 * 119.99328 * 2 1 3 5 5 H 1.08001 * 120.00037 * 119.99654 * 4 2 1 6 6 C 1.37875 * 120.00214 * 300.00299 * 4 2 1 7 7 N 1.31516 * 120.00297 * 179.97438 * 6 4 2 8 8 Si 1.86800 * 119.99907 * 359.97438 * 6 4 2 9 9 H 1.48502 * 109.47496 * 89.99791 * 8 6 4 10 10 H 1.48503 * 109.47098 * 209.99926 * 8 6 4 11 11 H 1.48508 * 109.47255 * 329.99814 * 8 6 4 12 12 C 1.50700 * 109.47442 * 239.99535 * 2 1 3 13 13 O 1.21283 * 119.99803 * 239.99993 * 12 2 1 14 14 N 1.34777 * 119.99675 * 60.27868 * 12 2 1 15 15 C 1.46497 * 119.99525 * 179.72583 * 14 12 2 16 16 H 1.09001 * 109.47884 * 324.99780 * 15 14 12 17 17 C 1.53001 * 109.47201 * 204.99403 * 15 14 12 18 18 C 1.50702 * 109.46638 * 64.99927 * 17 15 14 19 19 C 1.34001 * 124.92234 * 90.00235 * 18 17 15 20 20 C 1.46784 * 106.18652 * 179.97438 * 19 18 17 21 21 C 1.39404 * 134.36900 * 179.97438 * 20 19 18 22 22 C 1.36733 * 119.71346 * 179.97438 * 21 20 19 23 23 C 1.38741 * 120.42136 * 0.08271 * 22 21 20 24 24 C 1.37853 * 120.68341 * 359.93735 * 23 22 21 25 25 C 1.38937 * 119.81829 * 0.02562 * 24 23 22 26 26 O 1.34451 * 124.92728 * 269.69319 * 18 17 15 27 27 C 1.50707 * 109.47332 * 85.00137 * 15 14 12 28 28 O 1.20821 * 119.99616 * 359.97438 * 27 15 14 29 29 O 1.34228 * 120.00220 * 179.97438 * 27 15 14 30 30 H 1.08996 * 109.47637 * 300.00483 * 1 2 3 31 31 H 1.09004 * 109.46762 * 60.00268 * 1 2 3 32 32 H 1.08995 * 109.47223 * 179.97438 * 1 2 3 33 33 H 0.97001 * 119.99846 * 179.97438 * 7 6 4 34 34 H 0.97000 * 119.99894 * 359.71837 * 14 12 2 35 35 H 1.09000 * 109.47404 * 185.00044 * 17 15 14 36 36 H 1.09001 * 109.47466 * 305.00513 * 17 15 14 37 37 H 1.08002 * 126.90630 * 359.96510 * 19 18 17 38 38 H 1.08001 * 120.14126 * 359.97438 * 21 20 19 39 39 H 1.08002 * 119.78948 * 180.02562 * 22 21 20 40 40 H 1.08001 * 119.66418 * 179.97438 * 23 22 21 41 41 H 1.07997 * 120.08895 * 180.02562 * 24 23 22 42 42 H 0.96696 * 117.00128 * 179.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6532 -1.5884 1.1316 6 6 1.6992 -0.2392 2.4828 7 7 2.1371 -0.8593 3.5567 8 14 0.6258 1.2800 2.6540 9 1 -0.8022 0.8748 2.6992 10 1 0.9770 1.9956 3.9069 11 1 0.8491 2.1775 1.4921 12 6 2.0324 -0.7105 -1.2304 13 8 2.7297 -1.6966 -1.1189 14 7 1.7114 -0.2468 -2.4545 15 6 2.2048 -0.9340 -3.6505 16 1 3.2035 -1.3263 -3.4584 17 6 2.2604 0.0522 -4.8190 18 6 3.2800 1.1223 -4.5248 19 6 4.5774 1.0567 -4.8532 20 6 5.1836 2.3059 -4.3773 21 6 6.4716 2.8384 -4.4090 22 6 6.7105 4.0676 -3.8598 23 6 5.6801 4.7861 -3.2707 24 6 4.4003 4.2755 -3.2296 25 6 4.1359 3.0286 -3.7825 26 8 3.0185 2.2838 -3.9001 27 6 1.2767 -2.0701 -3.9960 28 8 0.3034 -2.2840 -3.3129 29 8 1.5315 -2.8442 -5.0625 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 -0.3633 -1.0276 -0.0005 33 1 1.9031 -0.5276 4.4376 34 1 1.1537 0.5418 -2.5435 35 1 2.5421 -0.4779 -5.7288 36 1 1.2810 0.5110 -4.9542 37 1 5.0768 0.2473 -5.3651 38 1 7.2772 2.2824 -4.8653 39 1 7.7077 4.4815 -3.8840 40 1 5.8826 5.7557 -2.8403 41 1 3.6054 4.8432 -2.7690 42 1 0.9080 -3.5607 -5.2439 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592213127.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:50:58 Heat of formation + Delta-G solvation = -120.940822 kcal Electronic energy + Delta-G solvation = -28393.063828 eV Core-core repulsion = 24303.695912 eV Total energy + Delta-G solvation = -4089.367916 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.43547 -41.72546 -40.38595 -38.81857 -37.20816 -36.71695 -35.85575 -34.15642 -33.42554 -32.23386 -31.32309 -29.62745 -27.15740 -26.50239 -24.95292 -23.84913 -22.81881 -22.35193 -21.79448 -21.30107 -19.19593 -18.84549 -18.48804 -18.29129 -17.78620 -17.65161 -17.22057 -16.94322 -16.61596 -16.37220 -16.06311 -15.79171 -15.10581 -15.05164 -14.75444 -14.62332 -14.18573 -14.15243 -14.02356 -13.92344 -13.53826 -13.48996 -13.17691 -12.95976 -12.85979 -12.60146 -12.57495 -12.53688 -12.20375 -11.89459 -11.80187 -11.50648 -11.27383 -11.06147 -10.81872 -10.60959 -10.36459 -9.55937 -9.09159 -8.29772 -6.37548 -0.05042 0.43295 1.05418 1.30517 1.33705 1.36735 1.47898 1.54313 1.73814 1.96533 2.31641 2.34434 2.80494 3.03569 3.35987 3.49452 3.73495 3.85835 4.02146 4.09805 4.15331 4.23167 4.31293 4.36319 4.40843 4.44037 4.55138 4.58011 4.66184 4.72353 4.81000 4.93585 4.97889 5.25061 5.27362 5.37351 5.39437 5.47497 5.51036 5.53963 5.56159 5.78347 6.19847 6.23061 6.51049 6.76821 6.92680 7.21386 7.34573 8.87874 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.008636 B = 0.004782 C = 0.003411 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3241.281907 B = 5853.725138 C = 8207.773425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.006 4.006 3 H 0.068 0.932 4 C -0.521 4.521 5 H 0.030 0.970 6 C 0.009 3.991 7 N -0.950 5.950 8 Si 0.957 3.043 9 H -0.261 1.261 10 H -0.295 1.295 11 H -0.233 1.233 12 C 0.538 3.462 13 O -0.575 6.575 14 N -0.706 5.706 15 C 0.156 3.844 16 H 0.118 0.882 17 C -0.030 4.030 18 C 0.025 3.975 19 C -0.201 4.201 20 C -0.156 4.156 21 C -0.084 4.084 22 C -0.139 4.139 23 C -0.094 4.094 24 C -0.125 4.125 25 C 0.025 3.975 26 O -0.203 6.203 27 C 0.474 3.526 28 O -0.537 6.537 29 O -0.499 6.499 30 H 0.048 0.952 31 H 0.080 0.920 32 H 0.041 0.959 33 H 0.268 0.732 34 H 0.417 0.583 35 H 0.163 0.837 36 H 0.117 0.883 37 H 0.183 0.817 38 H 0.146 0.854 39 H 0.157 0.843 40 H 0.162 0.838 41 H 0.142 0.858 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.783 11.317 -25.397 27.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.028 4.028 3 H 0.086 0.914 4 C -0.559 4.559 5 H 0.049 0.951 6 C -0.188 4.188 7 N -0.590 5.590 8 Si 0.781 3.219 9 H -0.187 1.187 10 H -0.223 1.223 11 H -0.156 1.156 12 C 0.327 3.673 13 O -0.453 6.453 14 N -0.361 5.361 15 C 0.049 3.951 16 H 0.136 0.864 17 C -0.067 4.067 18 C -0.022 4.022 19 C -0.220 4.220 20 C -0.157 4.157 21 C -0.102 4.102 22 C -0.157 4.157 23 C -0.112 4.112 24 C -0.144 4.144 25 C -0.022 4.022 26 O -0.105 6.105 27 C 0.314 3.686 28 O -0.426 6.426 29 O -0.312 6.312 30 H 0.066 0.934 31 H 0.099 0.901 32 H 0.060 0.940 33 H 0.077 0.923 34 H 0.254 0.746 35 H 0.180 0.820 36 H 0.136 0.864 37 H 0.200 0.800 38 H 0.163 0.837 39 H 0.174 0.826 40 H 0.180 0.820 41 H 0.159 0.841 42 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges 3.035 10.921 -24.792 27.260 hybrid contribution -0.850 -0.317 0.845 1.240 sum 2.185 10.604 -23.947 26.280 Atomic orbital electron populations 1.21975 0.94587 1.01384 1.01347 1.19236 0.95257 0.97415 0.90869 0.91441 1.21043 1.31746 1.12850 0.90250 0.95136 1.25995 0.97356 1.00667 0.94782 1.70068 1.47543 1.42704 0.98697 0.85743 0.78831 0.79144 0.78133 1.18710 1.22286 1.15589 1.21059 0.77774 0.83295 0.85161 1.90564 1.39401 1.28182 1.87176 1.45751 1.54885 1.31830 1.03669 1.20529 0.97162 0.90393 0.87048 0.86406 1.20574 0.99046 0.90061 0.97030 1.22233 0.96140 0.86536 0.97319 1.22642 0.93161 0.98880 1.07325 1.20336 0.95641 0.96139 1.03559 1.20654 0.94463 0.96124 0.98933 1.21196 1.00828 0.94669 0.98975 1.21361 0.90749 1.01069 0.97999 1.20338 0.99309 0.92140 1.02584 1.20055 0.84588 0.95235 1.02305 1.83897 1.34182 1.27061 1.65352 1.23932 0.84221 0.82979 0.77456 1.90762 1.30391 1.70489 1.50914 1.84437 1.57136 1.44880 1.44794 0.93391 0.90087 0.93983 0.92319 0.74558 0.81979 0.86432 0.79972 0.83674 0.82555 0.82004 0.84062 0.70833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.67 8.57 71.98 0.62 -5.06 16 2 C -0.01 -0.30 2.23 -12.29 -0.03 -0.33 16 3 H 0.07 3.08 7.20 -2.38 -0.02 3.06 16 4 C -0.52 -32.29 8.96 25.60 0.23 -32.06 16 5 H 0.03 2.22 7.00 -2.91 -0.02 2.19 16 6 C 0.01 0.52 5.45 84.65 0.46 0.98 16 7 N -0.95 -62.32 13.96 21.45 0.30 -62.02 16 8 Si 0.96 44.62 24.37 68.60 1.67 46.29 16 9 H -0.26 -11.48 6.87 99.48 0.68 -10.79 16 10 H -0.30 -13.69 7.11 99.48 0.71 -12.99 16 11 H -0.23 -9.51 6.53 99.48 0.65 -8.86 16 12 C 0.54 24.60 6.97 87.66 0.61 25.22 16 13 O -0.58 -31.59 15.12 -3.04 -0.05 -31.63 16 14 N -0.71 -22.91 4.22 -446.09 -1.88 -24.79 16 15 C 0.16 3.96 2.47 44.25 0.11 4.07 16 16 H 0.12 3.36 7.58 -2.39 -0.02 3.34 16 17 C -0.03 -0.47 5.22 29.85 0.16 -0.31 16 18 C 0.02 0.53 6.21 24.72 0.15 0.69 16 19 C -0.20 -4.25 11.01 23.54 0.26 -3.99 16 20 C -0.16 -3.78 6.40 -20.21 -0.13 -3.91 16 21 C -0.08 -1.65 10.05 22.20 0.22 -1.43 16 22 C -0.14 -2.33 9.98 22.04 0.22 -2.11 16 23 C -0.09 -1.64 10.01 22.30 0.22 -1.42 16 24 C -0.13 -2.77 10.07 22.35 0.23 -2.54 16 25 C 0.03 0.66 7.42 22.99 0.17 0.83 16 26 O -0.20 -5.26 10.58 -8.90 -0.09 -5.35 16 27 C 0.47 12.31 7.66 71.24 0.55 12.86 16 28 O -0.54 -18.86 17.08 21.98 0.38 -18.48 16 29 O -0.50 -8.23 13.23 -51.39 -0.68 -8.91 16 30 H 0.05 2.01 3.27 -2.39 -0.01 2.00 16 31 H 0.08 2.59 7.57 -2.38 -0.02 2.58 16 32 H 0.04 1.89 8.14 -2.39 -0.02 1.87 16 33 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 34 H 0.42 11.20 8.03 -92.71 -0.74 10.46 16 35 H 0.16 1.34 7.99 -2.39 -0.02 1.32 16 36 H 0.12 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.18 2.73 8.06 -2.91 -0.02 2.71 16 38 H 0.15 2.14 8.06 -2.91 -0.02 2.12 16 39 H 0.16 1.62 8.06 -2.91 -0.02 1.60 16 40 H 0.16 1.77 8.06 -2.91 -0.02 1.75 16 41 H 0.14 2.66 8.06 -2.91 -0.02 2.64 16 42 H 0.43 3.76 9.10 -74.06 -0.67 3.08 16 Total: -1.00 -91.79 360.38 3.29 -88.50 By element: Atomic # 1 Polarization: 25.32 SS G_CDS: -0.41 Total: 24.91 kcal Atomic # 6 Polarization: -12.57 SS G_CDS: 4.05 Total: -8.52 kcal Atomic # 7 Polarization: -85.23 SS G_CDS: -1.58 Total: -86.81 kcal Atomic # 8 Polarization: -63.93 SS G_CDS: -0.44 Total: -64.37 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.67 Total: 46.29 kcal Total: -91.79 3.29 -88.50 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592213127.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.441 kcal (2) G-P(sol) polarization free energy of solvation -91.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds