Wall clock time and date at job start Tue Mar 31 2020 17:51:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47092 * 2 1 4 4 C 1.50698 * 109.46902 * 240.00323 * 2 1 3 5 5 H 1.08002 * 120.00051 * 239.99532 * 4 2 1 6 6 C 1.37877 * 120.00197 * 60.00213 * 4 2 1 7 7 N 1.31511 * 119.99805 * 359.97438 * 6 4 2 8 8 Si 1.86799 * 120.00102 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.47322 * 89.99469 * 8 6 4 10 10 H 1.48501 * 109.47343 * 209.99631 * 8 6 4 11 11 H 1.48507 * 109.47163 * 329.99685 * 8 6 4 12 12 C 1.50698 * 109.47412 * 120.00392 * 2 1 3 13 13 O 1.21278 * 120.00539 * 119.99846 * 12 2 1 14 14 N 1.34780 * 119.99495 * 300.00380 * 12 2 1 15 15 C 1.46502 * 119.99429 * 180.02562 * 14 12 2 16 16 H 1.09001 * 109.47434 * 324.99037 * 15 14 12 17 17 C 1.53009 * 109.46619 * 204.99394 * 15 14 12 18 18 C 1.50704 * 109.46904 * 64.99987 * 17 15 14 19 19 C 1.33990 * 124.92202 * 89.99854 * 18 17 15 20 20 C 1.46787 * 106.18608 * 179.97438 * 19 18 17 21 21 C 1.39406 * 134.37016 * 180.02562 * 20 19 18 22 22 C 1.36736 * 119.71514 * 180.02562 * 21 20 19 23 23 C 1.38743 * 120.41735 * 359.95255 * 22 21 20 24 24 C 1.37855 * 120.68498 * 0.02562 * 23 22 21 25 25 C 1.38944 * 119.81775 * 0.02562 * 24 23 22 26 26 O 1.34443 * 124.92335 * 269.97214 * 18 17 15 27 27 C 1.50699 * 109.47522 * 84.99704 * 15 14 12 28 28 O 1.20825 * 119.99917 * 359.97438 * 27 15 14 29 29 O 1.34232 * 119.99947 * 179.97438 * 27 15 14 30 30 H 1.09001 * 109.46872 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47030 * 299.99798 * 1 2 3 32 32 H 1.09001 * 109.47604 * 59.99872 * 1 2 3 33 33 H 0.97011 * 119.99735 * 180.02562 * 7 6 4 34 34 H 0.96999 * 120.00600 * 359.97438 * 14 12 2 35 35 H 1.08996 * 109.47025 * 305.00216 * 17 15 14 36 36 H 1.09003 * 109.47047 * 184.99693 * 17 15 14 37 37 H 1.08003 * 126.91279 * 359.97438 * 19 18 17 38 38 H 1.07992 * 120.14243 * 359.94200 * 21 20 19 39 39 H 1.07998 * 119.79185 * 179.97438 * 22 21 20 40 40 H 1.07998 * 119.66172 * 180.30210 * 23 22 21 41 41 H 1.07999 * 120.08813 * 180.02562 * 24 23 22 42 42 H 0.96699 * 116.99645 * 179.97438 * 29 27 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4827 7 7 0.9428 0.8298 -2.6033 8 14 2.3224 -1.1193 -4.0080 9 1 1.3448 -2.1614 -4.4124 10 1 2.4872 -0.1400 -5.1121 11 1 3.6309 -1.7564 -3.7121 12 6 2.0324 -0.7105 1.2304 13 8 2.7297 -1.6965 1.1191 14 7 1.7067 -0.2500 2.4545 15 6 2.1956 -0.9404 3.6506 16 1 2.2326 -2.0132 3.4614 17 6 1.2516 -0.6615 4.8220 18 6 -0.0978 -1.2680 4.5350 19 6 -0.4661 -2.5124 4.8685 20 6 -1.8477 -2.6701 4.3986 21 6 -2.7783 -3.7073 4.4377 22 6 -4.0188 -3.5259 3.8918 23 6 -4.3562 -2.3168 3.3009 24 6 -3.4493 -1.2797 3.2532 25 6 -2.1830 -1.4436 3.8012 26 8 -1.1069 -0.6388 3.9078 27 6 3.5769 -0.4420 3.9891 28 8 4.0997 0.4028 3.3014 29 8 4.2266 -0.9367 5.0545 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 0.7081 1.1610 -3.4844 34 1 1.1493 0.5388 2.5436 35 1 1.1452 0.4152 4.9545 36 1 1.6614 -1.1008 5.7315 37 1 0.1331 -3.2510 5.3802 38 1 -2.5202 -4.6505 4.8961 39 1 -4.7406 -4.3287 3.9211 40 1 -5.3411 -2.1851 2.8778 41 1 -3.7223 -0.3425 2.7913 42 1 5.1104 -0.5864 5.2313 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592213129.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:51:09 Heat of formation + Delta-G solvation = -101.408125 kcal Electronic energy + Delta-G solvation = -28442.129052 eV Core-core repulsion = 24353.608138 eV Total energy + Delta-G solvation = -4088.520914 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.52411 -40.44667 -38.68322 -37.95596 -36.08408 -35.40341 -33.71922 -32.99808 -31.54228 -30.47145 -30.23966 -28.44107 -25.47753 -25.08896 -22.97747 -22.91522 -21.89560 -21.25018 -20.75614 -19.57255 -18.06292 -17.41449 -17.29470 -16.71600 -16.45216 -16.17510 -15.75236 -15.59871 -15.48148 -15.07569 -14.37190 -14.25095 -13.92958 -13.78789 -13.27429 -13.23050 -13.06533 -12.82687 -12.58080 -12.42632 -12.27145 -12.08756 -11.76047 -11.51432 -11.43032 -11.00039 -10.99394 -10.72486 -10.65146 -10.58594 -10.23463 -10.14819 -9.93753 -8.95208 -8.82447 -8.67719 -8.64208 -8.31599 -8.20766 -5.99451 -4.02343 0.81958 1.31524 2.11095 2.35063 2.58343 2.88064 3.36428 3.41657 3.48174 3.61858 3.66671 3.82750 4.24022 4.49526 4.51627 4.58761 4.74849 4.87874 5.01927 5.04505 5.17687 5.21844 5.33575 5.35943 5.40756 5.45679 5.62741 5.79491 6.12338 6.19105 6.19464 6.35141 6.36142 6.49363 6.58687 6.66728 6.78267 6.87918 6.97066 7.14057 7.50789 7.78421 7.91957 7.97462 8.12507 8.39978 9.05370 9.14376 9.62460 11.08222 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.008760 B = 0.004572 C = 0.003283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3195.429911 B = 6122.608676 C = 8527.525912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.033 3.967 3 H 0.055 0.945 4 C -0.500 4.500 5 H 0.073 0.927 6 C 0.058 3.942 7 N -0.896 5.896 8 Si 0.900 3.100 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.273 1.273 12 C 0.530 3.470 13 O -0.541 6.541 14 N -0.724 5.724 15 C 0.161 3.839 16 H 0.128 0.872 17 C -0.046 4.046 18 C 0.043 3.957 19 C -0.200 4.200 20 C -0.130 4.130 21 C -0.073 4.073 22 C -0.138 4.138 23 C -0.096 4.096 24 C -0.103 4.103 25 C 0.060 3.940 26 O -0.184 6.184 27 C 0.463 3.537 28 O -0.490 6.490 29 O -0.520 6.520 30 H 0.030 0.970 31 H 0.013 0.987 32 H 0.093 0.907 33 H 0.260 0.740 34 H 0.404 0.596 35 H 0.097 0.903 36 H 0.124 0.876 37 H 0.159 0.841 38 H 0.125 0.875 39 H 0.127 0.873 40 H 0.134 0.866 41 H 0.133 0.867 42 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.449 -4.024 19.986 21.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.012 3.988 3 H 0.073 0.927 4 C -0.538 4.538 5 H 0.091 0.909 6 C -0.142 4.142 7 N -0.535 5.535 8 Si 0.728 3.272 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.198 1.198 12 C 0.321 3.679 13 O -0.416 6.416 14 N -0.380 5.380 15 C 0.052 3.948 16 H 0.145 0.855 17 C -0.084 4.084 18 C -0.005 4.005 19 C -0.219 4.219 20 C -0.131 4.131 21 C -0.091 4.091 22 C -0.156 4.156 23 C -0.114 4.114 24 C -0.121 4.121 25 C 0.012 3.988 26 O -0.085 6.085 27 C 0.301 3.699 28 O -0.375 6.375 29 O -0.332 6.332 30 H 0.049 0.951 31 H 0.032 0.968 32 H 0.112 0.888 33 H 0.070 0.930 34 H 0.240 0.760 35 H 0.116 0.884 36 H 0.142 0.858 37 H 0.177 0.823 38 H 0.143 0.857 39 H 0.145 0.855 40 H 0.151 0.849 41 H 0.151 0.849 42 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -7.239 -4.275 19.340 21.088 hybrid contribution 0.741 0.086 -0.685 1.013 sum -6.498 -4.189 18.655 20.194 Atomic orbital electron populations 1.21718 0.96295 0.99767 1.00986 1.18870 0.94226 0.96939 0.88803 0.92702 1.21120 1.30971 1.12760 0.88958 0.90855 1.24936 0.95144 0.95059 0.99063 1.69876 1.37124 1.23054 1.23484 0.86453 0.79445 0.79231 0.82088 1.20682 1.21278 1.19770 1.22119 0.77699 0.83903 0.84186 1.90529 1.37641 1.26931 1.86498 1.46202 1.54517 1.33124 1.04111 1.20279 0.86335 1.00862 0.87320 0.85452 1.20481 0.86505 1.03330 0.98065 1.21826 0.89510 0.92365 0.96816 1.22223 0.94751 0.97014 1.07905 1.19924 0.94968 0.95238 1.02935 1.20260 0.92421 0.97510 0.98926 1.20755 0.96741 0.97875 1.00253 1.20920 0.99079 0.92443 0.98978 1.20005 0.89248 1.01017 1.01853 1.19591 0.88939 0.89358 1.00872 1.83958 1.19656 1.40427 1.64440 1.24160 0.89039 0.79303 0.77365 1.90765 1.67580 1.30266 1.48922 1.84509 1.35224 1.66381 1.47119 0.95127 0.96824 0.88814 0.92990 0.76010 0.88433 0.85772 0.82343 0.85686 0.85524 0.84864 0.84876 0.73361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 8.87 37.16 0.33 -2.74 16 2 C 0.03 0.84 2.64 -92.92 -0.25 0.60 16 3 H 0.06 1.49 8.14 -51.93 -0.42 1.06 16 4 C -0.50 -14.58 8.37 -34.44 -0.29 -14.87 16 5 H 0.07 2.26 6.75 -52.49 -0.35 1.90 16 6 C 0.06 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.90 -25.65 11.32 55.43 0.63 -25.03 16 8 Si 0.90 22.33 29.54 -169.99 -5.02 17.31 16 9 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 10 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.27 -6.83 7.11 56.52 0.40 -6.43 16 12 C 0.53 12.46 6.98 -10.98 -0.08 12.38 16 13 O -0.54 -14.33 15.12 5.56 0.08 -14.25 16 14 N -0.72 -12.94 4.21 -54.93 -0.23 -13.17 16 15 C 0.16 2.29 2.47 -69.08 -0.17 2.12 16 16 H 0.13 1.94 7.58 -51.93 -0.39 1.55 16 17 C -0.05 -0.46 5.23 -27.88 -0.15 -0.61 16 18 C 0.04 0.52 6.21 -35.80 -0.22 0.30 16 19 C -0.20 -2.37 11.01 -37.62 -0.41 -2.79 16 20 C -0.13 -1.70 6.40 -105.16 -0.67 -2.38 16 21 C -0.07 -0.81 10.05 -39.69 -0.40 -1.21 16 22 C -0.14 -1.37 9.98 -39.94 -0.40 -1.77 16 23 C -0.10 -0.98 10.01 -39.54 -0.40 -1.38 16 24 C -0.10 -1.25 10.07 -39.46 -0.40 -1.65 16 25 C 0.06 0.84 7.42 -38.47 -0.29 0.56 16 26 O -0.18 -2.63 10.58 3.95 0.04 -2.58 16 27 C 0.46 6.75 7.66 36.00 0.28 7.02 16 28 O -0.49 -9.26 17.08 -18.75 -0.32 -9.58 16 29 O -0.52 -5.31 13.23 -39.26 -0.52 -5.83 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.01 0.26 7.56 -51.93 -0.39 -0.13 16 32 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.40 6.54 8.02 -40.82 -0.33 6.21 16 35 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.12 0.86 7.99 -51.93 -0.42 0.45 16 37 H 0.16 1.44 8.06 -52.48 -0.42 1.02 16 38 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 39 H 0.13 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.13 0.99 8.06 -52.49 -0.42 0.57 16 41 H 0.13 1.42 8.06 -52.49 -0.42 1.00 16 42 H 0.41 2.57 9.10 45.56 0.41 2.98 16 LS Contribution 367.17 15.07 5.53 5.53 Total: -1.00 -36.78 367.17 -7.71 -44.49 By element: Atomic # 1 Polarization: 12.24 SS G_CDS: -4.30 Total: 7.94 kcal Atomic # 6 Polarization: -1.24 SS G_CDS: -3.60 Total: -4.84 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 0.40 Total: -38.20 kcal Atomic # 8 Polarization: -31.52 SS G_CDS: -0.71 Total: -32.23 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.31 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -36.78 -7.71 -44.49 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592213129.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.919 kcal (2) G-P(sol) polarization free energy of solvation -36.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.489 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds