Wall clock time and date at job start Tue Mar 31 2020 16:49:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46678 * 2 1 4 4 C 1.50703 * 109.47465 * 55.09021 * 3 2 1 5 5 O 1.20833 * 119.99554 * 7.38618 * 4 3 2 6 6 O 1.34220 * 120.00222 * 187.38241 * 4 3 2 7 7 N 1.46504 * 109.46899 * 240.00271 * 2 1 3 8 8 S 1.65603 * 120.00162 * 307.11618 * 7 2 1 9 9 O 1.42098 * 104.27279 * 320.67199 * 8 7 2 10 10 O 1.42099 * 104.27661 * 192.81539 * 8 7 2 11 11 C 1.81396 * 104.44900 * 76.74216 * 8 7 2 12 12 C 1.53002 * 109.47110 * 182.65694 * 11 8 7 13 13 C 1.50693 * 115.55310 * 302.34332 * 12 11 8 14 14 H 1.07997 * 119.99952 * 95.10094 * 13 12 11 15 15 C 1.37872 * 120.00134 * 274.83229 * 13 12 11 16 16 N 1.31517 * 120.00193 * 355.54926 * 15 13 12 17 17 Si 1.86797 * 120.00327 * 175.55011 * 15 13 12 18 18 H 1.48499 * 109.46879 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47523 * 119.99774 * 17 15 13 20 20 H 1.48509 * 109.47344 * 239.99954 * 17 15 13 21 21 C 1.53005 * 117.49687 * 88.01267 * 12 11 8 22 22 C 1.52999 * 117.49675 * 156.67062 * 12 11 8 23 23 C 1.52998 * 109.47295 * 120.00373 * 2 1 3 24 24 C 1.53004 * 117.49661 * 244.88245 * 23 2 1 25 25 C 1.53002 * 117.49733 * 176.22359 * 23 2 1 26 26 H 1.09003 * 109.46796 * 189.86904 * 1 2 3 27 27 H 1.08997 * 109.47030 * 309.86353 * 1 2 3 28 28 H 1.09002 * 109.47536 * 69.86702 * 1 2 3 29 29 H 1.09002 * 109.46920 * 175.08854 * 3 2 1 30 30 H 1.08997 * 109.47435 * 295.08672 * 3 2 1 31 31 H 0.96708 * 117.00125 * 179.97438 * 6 4 3 32 32 H 0.96994 * 119.99808 * 127.11516 * 7 2 1 33 33 H 1.08998 * 109.47228 * 62.65763 * 11 8 7 34 34 H 1.09000 * 109.47202 * 302.65944 * 11 8 7 35 35 H 0.96998 * 120.00887 * 185.00229 * 16 15 13 36 36 H 1.08995 * 117.49806 * 215.00685 * 21 12 11 37 37 H 1.09009 * 117.49845 * 0.02562 * 21 12 11 38 38 H 1.09003 * 117.50308 * 359.97438 * 22 12 11 39 39 H 1.09000 * 117.49626 * 144.97862 * 22 12 11 40 40 H 1.09000 * 115.55247 * 30.54952 * 23 2 1 41 41 H 1.09000 * 117.49628 * 359.97438 * 24 23 2 42 42 H 1.08997 * 117.49584 * 145.02195 * 24 23 2 43 43 H 1.09001 * 117.49199 * 214.97541 * 25 23 2 44 44 H 1.08995 * 117.49542 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4407 2.1872 1.1651 5 8 0.7918 1.5924 1.9929 6 8 1.6279 3.5110 1.2834 7 7 2.0183 -0.6906 -1.1962 8 16 1.4784 -2.2155 -1.5504 9 8 1.4098 -2.8648 -0.2883 10 8 2.3634 -2.6742 -2.5632 11 6 -0.1855 -1.9609 -2.2265 12 6 -0.8237 -3.3168 -2.5350 13 6 -0.0575 -4.1932 -3.4920 14 1 0.6184 -4.9451 -3.1126 15 6 -0.2237 -4.0387 -4.8519 16 7 -1.1144 -3.1881 -5.3132 17 14 0.8162 -5.0376 -6.0394 18 1 1.7371 -5.9153 -5.2733 19 1 -0.0688 -5.8718 -6.8915 20 1 1.6076 -4.1195 -6.8975 21 6 -1.5954 -4.0070 -1.4084 22 6 -2.3514 -3.3836 -2.5844 23 6 2.0401 -0.7213 1.2492 24 6 2.8187 0.1059 2.2741 25 6 3.5523 -0.9060 1.3903 26 1 -0.3633 -1.0125 0.1761 27 1 -0.3633 0.6587 0.7888 28 1 -0.3634 0.3537 -0.9649 29 1 3.1264 1.4438 0.0880 30 1 1.7502 1.9303 -0.9307 31 1 1.2239 3.9451 2.0473 32 1 2.6579 -0.2546 -1.7808 33 1 -0.1196 -1.3736 -3.1424 34 1 -0.7966 -1.4292 -1.4972 35 1 -1.2828 -3.1315 -6.2668 36 1 -1.5488 -5.0949 -1.3595 37 1 -1.6488 -3.4948 -0.4476 38 1 -2.9019 -2.4617 -2.3968 39 1 -2.8023 -4.0612 -3.3095 40 1 1.3984 -1.5170 1.6276 41 1 2.9679 1.1638 2.0582 42 1 2.6895 -0.1460 3.3267 43 1 3.9054 -1.8231 1.8619 44 1 4.1837 -0.5140 0.5930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592329225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:31 Heat of formation + Delta-G solvation = -94.252135 kcal Electronic energy + Delta-G solvation = -28647.539050 eV Core-core repulsion = 24694.772394 eV Total energy + Delta-G solvation = -3952.766656 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21190 -38.57848 -36.73184 -36.25797 -36.05404 -34.99580 -34.60938 -32.00856 -30.75731 -29.11420 -27.81023 -25.46787 -23.70892 -22.29313 -22.19304 -21.15267 -19.84824 -19.31368 -18.59085 -18.24061 -17.10863 -16.85405 -16.59501 -16.39654 -15.60797 -15.29943 -14.90420 -14.63020 -14.48568 -14.10090 -13.75660 -13.45101 -13.17640 -13.02575 -12.53570 -12.45737 -12.18396 -11.81003 -11.70905 -11.50570 -11.49704 -11.29083 -11.17352 -11.10667 -10.97362 -10.93138 -10.85066 -10.61120 -10.42721 -10.40900 -10.12605 -9.99740 -9.83958 -9.64802 -9.24106 -8.99399 -8.51149 -8.05931 -6.10979 -4.23434 1.11447 1.96337 2.71030 3.31012 3.39313 3.48094 3.48328 3.99402 4.29874 4.40678 4.54165 4.64108 4.74201 4.96525 5.04209 5.09538 5.11919 5.18142 5.23894 5.26643 5.37025 5.50362 5.61714 5.67050 5.71432 5.86731 5.93516 6.00939 6.09386 6.17728 6.23998 6.30384 6.38869 6.41673 6.55454 6.65602 6.75114 7.02389 7.22959 7.27337 7.48257 7.66761 7.82308 8.22097 8.82881 9.49147 10.95542 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020010 B = 0.004092 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.958596 B = 6841.074899 C = 7096.769336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.230 3.770 3 C -0.119 4.119 4 C 0.481 3.519 5 O -0.490 6.490 6 O -0.520 6.520 7 N -1.124 6.124 8 S 2.614 3.386 9 O -0.963 6.963 10 O -0.949 6.949 11 C -0.569 4.569 12 C 0.040 3.960 13 C -0.515 4.515 14 H 0.068 0.932 15 C 0.082 3.918 16 N -0.875 5.875 17 Si 0.892 3.108 18 H -0.267 1.267 19 H -0.284 1.284 20 H -0.280 1.280 21 C -0.208 4.208 22 C -0.135 4.135 23 C -0.140 4.140 24 C -0.171 4.171 25 C -0.179 4.179 26 H 0.076 0.924 27 H 0.099 0.901 28 H 0.070 0.930 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.410 0.590 32 H 0.410 0.590 33 H 0.127 0.873 34 H 0.108 0.892 35 H 0.262 0.738 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.127 0.873 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.095 0.905 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.741 13.805 11.547 18.612 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.261 4.261 2 C 0.141 3.859 3 C -0.158 4.158 4 C 0.323 3.677 5 O -0.377 6.377 6 O -0.333 6.333 7 N -0.879 5.879 8 S 2.711 3.289 9 O -0.953 6.953 10 O -0.940 6.940 11 C -0.701 4.701 12 C 0.038 3.962 13 C -0.553 4.553 14 H 0.086 0.914 15 C -0.123 4.123 16 N -0.511 5.511 17 Si 0.719 3.281 18 H -0.191 1.191 19 H -0.210 1.210 20 H -0.205 1.205 21 C -0.245 4.245 22 C -0.174 4.174 23 C -0.159 4.159 24 C -0.209 4.209 25 C -0.216 4.216 26 H 0.094 0.906 27 H 0.118 0.882 28 H 0.089 0.911 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.269 0.731 32 H 0.243 0.757 33 H 0.145 0.855 34 H 0.127 0.873 35 H 0.071 0.929 36 H 0.103 0.897 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.107 0.893 40 H 0.145 0.855 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.113 0.887 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.107 12.680 11.514 17.873 hybrid contribution -0.066 0.549 -0.790 0.964 sum 5.040 13.229 10.724 17.760 Atomic orbital electron populations 1.23024 0.93603 1.05226 1.04235 1.19100 0.93900 0.88673 0.84218 1.21651 1.03053 0.94558 0.96557 1.22982 0.77785 0.80169 0.86780 1.90753 1.37248 1.68034 1.41690 1.84537 1.73201 1.23554 1.51969 1.56272 1.59239 1.38602 1.33751 1.04977 0.77717 0.71959 0.74290 1.93494 1.87719 1.72370 1.41731 1.93552 1.62616 1.77393 1.60400 1.30379 1.20633 1.07915 1.11185 1.18278 0.92282 0.89360 0.96321 1.20581 1.25656 1.18855 0.90170 0.91409 1.24940 0.94563 0.94500 0.98259 1.70010 1.32149 1.35021 1.13893 0.86516 0.80597 0.80175 0.80820 1.19102 1.21019 1.20536 1.23170 1.08927 0.99768 0.92646 1.22493 0.95660 1.00417 0.98801 1.22756 0.95042 1.01971 0.96147 1.23110 1.04757 0.95928 0.97064 1.22980 0.94949 1.01167 1.02538 0.90552 0.88220 0.91066 0.86794 0.86806 0.73096 0.75736 0.85516 0.87331 0.92854 0.89674 0.90985 0.91770 0.89313 0.85498 0.90107 0.88890 0.88658 0.89139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.66 6.50 37.16 0.24 -2.42 16 2 C 0.23 2.91 0.64 -131.82 -0.08 2.82 16 3 C -0.12 -1.09 4.49 -27.88 -0.13 -1.22 16 4 C 0.48 4.49 5.61 36.01 0.20 4.70 16 5 O -0.49 -5.75 11.98 -18.76 -0.22 -5.97 16 6 O -0.52 -3.57 13.42 -39.23 -0.53 -4.10 16 7 N -1.12 -15.96 5.24 0.54 0.00 -15.95 16 8 S 2.61 51.96 4.67 -107.50 -0.50 51.45 16 9 O -0.96 -20.34 14.97 -57.54 -0.86 -21.20 16 10 O -0.95 -22.65 17.30 -57.54 -1.00 -23.65 16 11 C -0.57 -11.69 5.31 37.16 0.20 -11.49 16 12 C 0.04 0.97 1.51 -155.66 -0.24 0.73 16 13 C -0.52 -14.16 7.58 -34.45 -0.26 -14.43 16 14 H 0.07 1.92 7.82 -52.49 -0.41 1.51 16 15 C 0.08 2.26 5.43 -17.82 -0.10 2.16 16 16 N -0.88 -24.15 12.65 55.43 0.70 -23.45 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 19 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 C -0.21 -4.55 9.94 -26.69 -0.27 -4.82 16 22 C -0.13 -3.08 9.17 -26.69 -0.24 -3.33 16 23 C -0.14 -1.94 3.16 -90.62 -0.29 -2.22 16 24 C -0.17 -1.98 7.71 -26.69 -0.21 -2.19 16 25 C -0.18 -2.27 9.71 -26.69 -0.26 -2.53 16 26 H 0.08 1.11 6.06 -51.93 -0.31 0.80 16 27 H 0.10 1.24 5.18 -51.93 -0.27 0.97 16 28 H 0.07 0.85 7.21 -51.93 -0.37 0.47 16 29 H 0.11 0.88 6.78 -51.93 -0.35 0.52 16 30 H 0.11 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.41 1.18 9.10 45.56 0.41 1.60 16 32 H 0.41 4.78 8.59 -34.47 -0.30 4.48 16 33 H 0.13 2.67 8.14 -51.93 -0.42 2.24 16 34 H 0.11 1.89 4.58 -51.92 -0.24 1.65 16 35 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 36 H 0.08 1.86 8.14 -51.93 -0.42 1.43 16 37 H 0.07 1.42 8.14 -51.92 -0.42 0.99 16 38 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.09 2.17 8.14 -51.93 -0.42 1.75 16 40 H 0.13 2.05 7.17 -51.93 -0.37 1.67 16 41 H 0.08 0.82 4.54 -51.93 -0.24 0.58 16 42 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.09 1.23 8.14 -51.93 -0.42 0.81 16 44 H 0.09 1.03 7.83 -51.93 -0.41 0.63 16 LS Contribution 356.16 15.07 5.37 5.37 Total: -1.00 -34.33 356.16 -8.86 -43.19 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -5.37 Total: 11.75 kcal Atomic # 6 Polarization: -32.80 SS G_CDS: -1.42 Total: -34.22 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.70 Total: -39.40 kcal Atomic # 8 Polarization: -52.31 SS G_CDS: -2.61 Total: -54.92 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Atomic # 16 Polarization: 51.96 SS G_CDS: -0.50 Total: 51.45 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -34.33 -8.86 -43.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592329225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.062 kcal (2) G-P(sol) polarization free energy of solvation -34.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.190 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds