Wall clock time and date at job start Tue Mar 31 2020 16:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.46678 * 2 1 4 4 C 1.50703 * 109.47465 * 55.09021 * 3 2 1 5 5 O 1.20833 * 119.99554 * 7.38618 * 4 3 2 6 6 O 1.34220 * 120.00222 * 187.38241 * 4 3 2 7 7 N 1.46504 * 109.46899 * 240.00271 * 2 1 3 8 8 S 1.65603 * 120.00162 * 307.11618 * 7 2 1 9 9 O 1.42098 * 104.27279 * 320.67199 * 8 7 2 10 10 O 1.42099 * 104.27661 * 192.81539 * 8 7 2 11 11 C 1.81396 * 104.44900 * 76.74216 * 8 7 2 12 12 C 1.53002 * 109.47110 * 182.65694 * 11 8 7 13 13 C 1.50693 * 115.55310 * 302.34332 * 12 11 8 14 14 H 1.07997 * 119.99952 * 95.10094 * 13 12 11 15 15 C 1.37872 * 120.00134 * 274.83229 * 13 12 11 16 16 N 1.31517 * 120.00193 * 355.54926 * 15 13 12 17 17 Si 1.86797 * 120.00327 * 175.55011 * 15 13 12 18 18 H 1.48499 * 109.46879 * 359.97438 * 17 15 13 19 19 H 1.48494 * 109.47523 * 119.99774 * 17 15 13 20 20 H 1.48509 * 109.47344 * 239.99954 * 17 15 13 21 21 C 1.53005 * 117.49687 * 88.01267 * 12 11 8 22 22 C 1.52999 * 117.49675 * 156.67062 * 12 11 8 23 23 C 1.52998 * 109.47295 * 120.00373 * 2 1 3 24 24 C 1.53004 * 117.49661 * 244.88245 * 23 2 1 25 25 C 1.53002 * 117.49733 * 176.22359 * 23 2 1 26 26 H 1.09003 * 109.46796 * 189.86904 * 1 2 3 27 27 H 1.08997 * 109.47030 * 309.86353 * 1 2 3 28 28 H 1.09002 * 109.47536 * 69.86702 * 1 2 3 29 29 H 1.09002 * 109.46920 * 175.08854 * 3 2 1 30 30 H 1.08997 * 109.47435 * 295.08672 * 3 2 1 31 31 H 0.96708 * 117.00125 * 179.97438 * 6 4 3 32 32 H 0.96994 * 119.99808 * 127.11516 * 7 2 1 33 33 H 1.08998 * 109.47228 * 62.65763 * 11 8 7 34 34 H 1.09000 * 109.47202 * 302.65944 * 11 8 7 35 35 H 0.96998 * 120.00887 * 185.00229 * 16 15 13 36 36 H 1.08995 * 117.49806 * 215.00685 * 21 12 11 37 37 H 1.09009 * 117.49845 * 0.02562 * 21 12 11 38 38 H 1.09003 * 117.50308 * 359.97438 * 22 12 11 39 39 H 1.09000 * 117.49626 * 144.97862 * 22 12 11 40 40 H 1.09000 * 115.55247 * 30.54952 * 23 2 1 41 41 H 1.09000 * 117.49628 * 359.97438 * 24 23 2 42 42 H 1.08997 * 117.49584 * 145.02195 * 24 23 2 43 43 H 1.09001 * 117.49199 * 214.97541 * 25 23 2 44 44 H 1.08995 * 117.49542 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 1.4407 2.1872 1.1651 5 8 0.7918 1.5924 1.9929 6 8 1.6279 3.5110 1.2834 7 7 2.0183 -0.6906 -1.1962 8 16 1.4784 -2.2155 -1.5504 9 8 1.4098 -2.8648 -0.2883 10 8 2.3634 -2.6742 -2.5632 11 6 -0.1855 -1.9609 -2.2265 12 6 -0.8237 -3.3168 -2.5350 13 6 -0.0575 -4.1932 -3.4920 14 1 0.6184 -4.9451 -3.1126 15 6 -0.2237 -4.0387 -4.8519 16 7 -1.1144 -3.1881 -5.3132 17 14 0.8162 -5.0376 -6.0394 18 1 1.7371 -5.9153 -5.2733 19 1 -0.0688 -5.8718 -6.8915 20 1 1.6076 -4.1195 -6.8975 21 6 -1.5954 -4.0070 -1.4084 22 6 -2.3514 -3.3836 -2.5844 23 6 2.0401 -0.7213 1.2492 24 6 2.8187 0.1059 2.2741 25 6 3.5523 -0.9060 1.3903 26 1 -0.3633 -1.0125 0.1761 27 1 -0.3633 0.6587 0.7888 28 1 -0.3634 0.3537 -0.9649 29 1 3.1264 1.4438 0.0880 30 1 1.7502 1.9303 -0.9307 31 1 1.2239 3.9451 2.0473 32 1 2.6579 -0.2546 -1.7808 33 1 -0.1196 -1.3736 -3.1424 34 1 -0.7966 -1.4292 -1.4972 35 1 -1.2828 -3.1315 -6.2668 36 1 -1.5488 -5.0949 -1.3595 37 1 -1.6488 -3.4948 -0.4476 38 1 -2.9019 -2.4617 -2.3968 39 1 -2.8023 -4.0612 -3.3095 40 1 1.3984 -1.5170 1.6276 41 1 2.9679 1.1638 2.0582 42 1 2.6895 -0.1460 3.3267 43 1 3.9054 -1.8231 1.8619 44 1 4.1837 -0.5140 0.5930 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592329225.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:30 Heat of formation + Delta-G solvation = -119.624324 kcal Electronic energy + Delta-G solvation = -28648.639271 eV Core-core repulsion = 24694.772394 eV Total energy + Delta-G solvation = -3953.866877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.99166 -39.44785 -38.55513 -37.78932 -36.86954 -36.66314 -35.66479 -34.07114 -31.75420 -30.36867 -29.15263 -27.48301 -24.71829 -23.23992 -22.98862 -22.94153 -21.42773 -20.65535 -19.91538 -18.99689 -18.46246 -18.27221 -17.76998 -17.38967 -16.90728 -16.75102 -16.48900 -16.20935 -15.62529 -15.44697 -15.38131 -14.92687 -14.16831 -14.04445 -13.79068 -13.69867 -13.46108 -13.13872 -13.10983 -12.98361 -12.86104 -12.82792 -12.80834 -12.62203 -12.41038 -12.36211 -12.18690 -12.13861 -11.87800 -11.83265 -11.50624 -11.35930 -11.09161 -10.91951 -10.82291 -10.53538 -10.43291 -9.85921 -8.18618 -6.34749 -0.44263 1.28739 1.35275 1.40124 1.51582 1.86761 2.38682 2.40150 2.98020 3.06167 3.08436 3.36220 3.42394 3.53491 3.70187 3.78662 3.99540 4.11547 4.16105 4.29243 4.42939 4.46339 4.52398 4.55397 4.56958 4.61182 4.70827 4.75939 4.85206 4.87291 4.98421 4.99910 5.14012 5.22762 5.24360 5.30663 5.44078 5.44906 5.63923 5.72062 5.77960 6.20862 6.23473 6.72054 7.11374 7.38607 8.87533 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.020010 B = 0.004092 C = 0.003945 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1398.958596 B = 6841.074899 C = 7096.769336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.228 3.772 3 C -0.120 4.120 4 C 0.488 3.512 5 O -0.519 6.519 6 O -0.512 6.512 7 N -1.106 6.106 8 S 2.629 3.371 9 O -0.981 6.981 10 O -0.995 6.995 11 C -0.567 4.567 12 C 0.008 3.992 13 C -0.532 4.532 14 H 0.045 0.955 15 C 0.045 3.955 16 N -0.892 5.892 17 Si 0.931 3.069 18 H -0.276 1.276 19 H -0.270 1.270 20 H -0.274 1.274 21 C -0.197 4.197 22 C -0.132 4.132 23 C -0.163 4.163 24 C -0.148 4.148 25 C -0.187 4.187 26 H 0.056 0.944 27 H 0.108 0.892 28 H 0.083 0.917 29 H 0.135 0.865 30 H 0.139 0.861 31 H 0.429 0.571 32 H 0.425 0.575 33 H 0.120 0.880 34 H 0.139 0.861 35 H 0.265 0.735 36 H 0.079 0.921 37 H 0.097 0.903 38 H 0.085 0.915 39 H 0.066 0.934 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.092 0.908 43 H 0.085 0.915 44 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.215 16.321 12.064 20.955 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.267 4.267 2 C 0.139 3.861 3 C -0.159 4.159 4 C 0.331 3.669 5 O -0.409 6.409 6 O -0.326 6.326 7 N -0.865 5.865 8 S 2.726 3.274 9 O -0.971 6.971 10 O -0.985 6.985 11 C -0.699 4.699 12 C 0.006 3.994 13 C -0.570 4.570 14 H 0.064 0.936 15 C -0.158 4.158 16 N -0.528 5.528 17 Si 0.757 3.243 18 H -0.200 1.200 19 H -0.195 1.195 20 H -0.200 1.200 21 C -0.234 4.234 22 C -0.171 4.171 23 C -0.183 4.183 24 C -0.185 4.185 25 C -0.225 4.225 26 H 0.075 0.925 27 H 0.126 0.874 28 H 0.102 0.898 29 H 0.152 0.848 30 H 0.157 0.843 31 H 0.291 0.709 32 H 0.261 0.739 33 H 0.139 0.861 34 H 0.157 0.843 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.104 0.896 39 H 0.084 0.916 40 H 0.115 0.885 41 H 0.119 0.881 42 H 0.110 0.890 43 H 0.103 0.897 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 5.577 15.211 12.026 20.176 hybrid contribution -0.220 -0.184 -0.845 0.893 sum 5.357 15.027 11.181 19.481 Atomic orbital electron populations 1.23073 0.94053 1.04278 1.05264 1.19212 0.93731 0.90592 0.82535 1.21648 1.04228 0.92054 0.97973 1.22881 0.77079 0.80763 0.86201 1.90762 1.38611 1.68797 1.42739 1.84488 1.72981 1.22175 1.53004 1.55700 1.59099 1.37077 1.34601 1.04186 0.77061 0.72973 0.73208 1.93474 1.87772 1.73831 1.41976 1.93487 1.63821 1.79320 1.61919 1.30321 1.21645 1.06043 1.11848 1.18420 0.92854 0.90920 0.97162 1.20725 1.25767 1.19172 0.91329 0.93638 1.25465 0.95459 0.95543 0.99349 1.70043 1.32777 1.35688 1.14270 0.85911 0.79600 0.79346 0.79485 1.20040 1.19494 1.19975 1.23212 1.07253 0.99667 0.93240 1.22423 0.95033 1.00940 0.98698 1.22703 0.95262 1.02534 0.97780 1.23121 1.02322 0.96570 0.96488 1.23086 0.94394 1.01529 1.03460 0.92536 0.87364 0.89814 0.84752 0.84307 0.70904 0.73940 0.86127 0.84297 0.92542 0.90259 0.88483 0.89626 0.91558 0.88538 0.88074 0.88967 0.89661 0.87617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -5.08 6.50 71.98 0.47 -4.62 16 2 C 0.23 5.28 0.64 3.60 0.00 5.28 16 3 C -0.12 -1.76 4.49 29.85 0.13 -1.63 16 4 C 0.49 7.41 5.61 71.24 0.40 7.80 16 5 O -0.52 -10.86 11.98 21.94 0.26 -10.59 16 6 O -0.51 -4.97 13.42 -51.32 -0.69 -5.66 16 7 N -1.11 -29.60 5.24 -152.21 -0.80 -30.40 16 8 S 2.63 104.26 4.67 -56.49 -0.26 103.99 16 9 O -0.98 -41.83 14.97 -127.65 -1.91 -43.74 16 10 O -1.00 -48.16 17.30 -127.65 -2.21 -50.37 16 11 C -0.57 -22.97 5.31 71.98 0.38 -22.59 16 12 C 0.01 0.41 1.51 -52.93 -0.08 0.33 16 13 C -0.53 -29.86 7.58 25.60 0.19 -29.67 16 14 H 0.05 2.68 7.82 -2.91 -0.02 2.65 16 15 C 0.04 2.48 5.43 84.65 0.46 2.94 16 16 N -0.89 -49.31 12.65 21.45 0.27 -49.04 16 17 Si 0.93 44.87 29.54 68.60 2.03 46.89 16 18 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 19 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 20 H -0.27 -12.90 7.11 99.48 0.71 -12.19 16 21 C -0.20 -8.55 9.94 30.62 0.30 -8.24 16 22 C -0.13 -6.00 9.17 30.62 0.28 -5.72 16 23 C -0.16 -4.35 3.16 -10.79 -0.03 -4.39 16 24 C -0.15 -3.12 7.71 30.62 0.24 -2.88 16 25 C -0.19 -4.50 9.71 30.62 0.30 -4.20 16 26 H 0.06 1.59 6.06 -2.39 -0.01 1.58 16 27 H 0.11 2.48 5.18 -2.39 -0.01 2.47 16 28 H 0.08 1.78 7.21 -2.39 -0.02 1.76 16 29 H 0.13 1.46 6.78 -2.39 -0.02 1.45 16 30 H 0.14 1.40 8.14 -2.39 -0.02 1.38 16 31 H 0.43 0.85 9.10 -74.05 -0.67 0.18 16 32 H 0.42 8.94 8.59 -96.75 -0.83 8.11 16 33 H 0.12 5.02 8.14 -2.39 -0.02 5.00 16 34 H 0.14 4.64 4.58 -2.39 -0.01 4.63 16 35 H 0.27 13.89 8.32 -92.71 -0.77 13.11 16 36 H 0.08 3.49 8.14 -2.39 -0.02 3.47 16 37 H 0.10 3.69 8.14 -2.38 -0.02 3.67 16 38 H 0.09 3.46 8.14 -2.39 -0.02 3.44 16 39 H 0.07 3.28 8.14 -2.39 -0.02 3.26 16 40 H 0.10 3.17 7.17 -2.39 -0.02 3.15 16 41 H 0.10 1.71 4.54 -2.39 -0.01 1.70 16 42 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 43 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 44 H 0.11 2.17 7.83 -2.39 -0.02 2.15 16 Total: -1.00 -75.10 356.16 -0.72 -75.82 By element: Atomic # 1 Polarization: 31.12 SS G_CDS: -0.45 Total: 30.67 kcal Atomic # 6 Polarization: -70.62 SS G_CDS: 3.04 Total: -67.57 kcal Atomic # 7 Polarization: -78.92 SS G_CDS: -0.53 Total: -79.44 kcal Atomic # 8 Polarization: -105.82 SS G_CDS: -4.54 Total: -110.36 kcal Atomic # 14 Polarization: 44.87 SS G_CDS: 2.03 Total: 46.89 kcal Atomic # 16 Polarization: 104.26 SS G_CDS: -0.26 Total: 103.99 kcal Total: -75.10 -0.72 -75.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592329225.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.803 kcal (2) G-P(sol) polarization free energy of solvation -75.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds