Wall clock time and date at job start Tue Mar 31 2020 16:49:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46987 * 2 1 4 4 C 1.50703 * 109.47196 * 300.83083 * 3 2 1 5 5 O 1.20831 * 119.99505 * 47.84372 * 4 3 2 6 6 O 1.34231 * 120.00292 * 227.83720 * 4 3 2 7 7 N 1.46493 * 109.47157 * 119.99979 * 2 1 3 8 8 S 1.65606 * 119.99907 * 24.83463 * 7 2 1 9 9 O 1.42107 * 104.27534 * 177.25648 * 8 7 2 10 10 O 1.42095 * 104.27822 * 305.10996 * 8 7 2 11 11 C 1.81394 * 104.45032 * 61.18227 * 8 7 2 12 12 C 1.52998 * 109.47043 * 184.14528 * 11 8 7 13 13 C 1.50700 * 115.54963 * 72.03210 * 12 11 8 14 14 H 1.08005 * 119.99171 * 265.96546 * 13 12 11 15 15 C 1.37868 * 120.00125 * 85.96866 * 13 12 11 16 16 N 1.31520 * 119.99840 * 177.69120 * 15 13 12 17 17 Si 1.86800 * 120.00088 * 357.69007 * 15 13 12 18 18 H 1.48501 * 109.47042 * 90.66361 * 17 15 13 19 19 H 1.48501 * 109.47125 * 210.65972 * 17 15 13 20 20 H 1.48493 * 109.47317 * 330.66237 * 17 15 13 21 21 C 1.53008 * 117.49938 * 286.35691 * 12 11 8 22 22 C 1.53007 * 117.49899 * 217.69726 * 12 11 8 23 23 C 1.53003 * 109.46939 * 239.99943 * 2 1 3 24 24 C 1.53001 * 117.49744 * 50.02455 * 23 2 1 25 25 C 1.52994 * 117.49576 * 118.64365 * 23 2 1 26 26 H 1.08994 * 109.47289 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47247 * 300.00172 * 1 2 3 28 28 H 1.09003 * 109.47061 * 59.99887 * 1 2 3 29 29 H 1.08993 * 109.47690 * 60.83608 * 3 2 1 30 30 H 1.09007 * 109.46897 * 180.83781 * 3 2 1 31 31 H 0.96695 * 116.99636 * 180.02562 * 6 4 3 32 32 H 0.96997 * 120.00521 * 204.83899 * 7 2 1 33 33 H 1.09000 * 109.47270 * 304.14511 * 11 8 7 34 34 H 1.09000 * 109.47279 * 64.14667 * 11 8 7 35 35 H 0.97004 * 119.99850 * 179.97438 * 16 15 13 36 36 H 1.09003 * 117.49725 * 0.02562 * 21 12 11 37 37 H 1.08999 * 117.49775 * 145.01931 * 21 12 11 38 38 H 1.08996 * 117.50037 * 214.97773 * 22 12 11 39 39 H 1.08998 * 117.49303 * 359.97438 * 22 12 11 40 40 H 1.08993 * 115.55698 * 264.33813 * 23 2 1 41 41 H 1.09001 * 117.49982 * 359.97438 * 24 23 2 42 42 H 1.09003 * 117.49919 * 214.98054 * 24 23 2 43 43 H 1.09004 * 117.49683 * 145.02373 * 25 23 2 44 44 H 1.09000 * 117.50353 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5209 2.1588 -1.2201 5 8 0.3509 2.0837 -1.5125 6 8 2.3581 2.8804 -1.9817 7 7 2.0183 -0.6906 1.1961 8 16 1.0672 -1.8195 1.9467 9 8 1.8777 -2.3129 3.0046 10 8 -0.1476 -1.1325 2.2139 11 6 0.8100 -3.1023 0.6902 12 6 -0.1484 -4.1637 1.2339 13 6 -1.5893 -3.7386 1.3530 14 1 -1.9607 -3.3456 2.2879 15 6 -2.4332 -3.8515 0.2686 16 7 -3.7014 -3.5232 0.3854 17 14 -1.7753 -4.4705 -1.3665 18 1 -1.9213 -5.9469 -1.4318 19 1 -2.5413 -3.8479 -2.4759 20 1 -0.3405 -4.1090 -1.4916 21 6 0.3928 -5.1299 2.2897 22 6 0.1296 -5.6223 0.8644 23 6 2.0400 -0.7213 -1.2493 24 6 1.4534 -0.2989 -2.5978 25 6 2.8888 0.0856 -2.2338 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6890 1.9520 0.8973 30 1 3.1299 1.4425 -0.0150 31 1 1.9788 3.3222 -2.7537 32 1 2.8987 -0.4866 1.5485 33 1 0.3833 -2.6524 -0.2062 34 1 1.7650 -3.5667 0.4444 35 1 -4.2951 -3.6022 -0.3777 36 1 1.4315 -5.0090 2.5973 37 1 -0.2935 -5.4583 3.0703 38 1 -0.7296 -6.2744 0.7079 39 1 0.9950 -5.8254 0.2336 40 1 2.2882 -1.7742 -1.1159 41 1 0.7038 0.4925 -2.5949 42 1 1.3157 -1.0740 -3.3517 43 1 3.6955 -0.4365 -2.7483 44 1 3.0843 1.1302 -1.9913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592329226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:36 Heat of formation + Delta-G solvation = -81.530292 kcal Electronic energy + Delta-G solvation = -29163.631202 eV Core-core repulsion = 25211.416206 eV Total energy + Delta-G solvation = -3952.214996 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.44997 -38.45725 -37.15389 -36.45802 -36.39797 -35.28371 -34.65647 -32.14125 -30.69837 -29.00007 -27.99511 -25.51248 -24.06138 -22.27835 -22.14538 -21.74634 -19.93011 -19.23582 -18.67512 -18.34870 -17.94944 -17.00217 -16.67924 -16.22216 -15.57847 -15.28591 -15.03764 -14.88229 -14.61102 -14.02417 -13.82241 -13.49663 -13.22981 -13.03085 -12.80815 -12.62763 -12.50112 -12.34160 -11.94487 -11.78266 -11.49965 -11.44419 -11.17956 -11.03283 -11.00016 -10.98218 -10.81554 -10.69497 -10.51674 -10.36610 -10.14954 -10.08345 -9.85995 -9.71453 -9.36830 -9.17336 -8.65917 -8.46634 -6.13788 -4.20164 0.88012 1.94493 2.69892 3.22735 3.30842 3.33424 3.36181 3.66754 4.29551 4.36539 4.38895 4.47714 4.78065 4.78757 4.83390 4.89064 4.91797 5.03932 5.06412 5.17222 5.25658 5.46646 5.58861 5.60946 5.68997 5.79590 5.86205 5.91960 5.98930 6.01713 6.04276 6.13657 6.24610 6.33271 6.40850 6.50445 6.63989 6.86560 6.98620 7.03748 7.13675 7.60507 7.67639 8.41147 8.94581 9.47014 10.97461 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.005624 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.291177 B = 4977.511047 C = 5732.978348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.224 3.776 3 C -0.118 4.118 4 C 0.487 3.513 5 O -0.494 6.494 6 O -0.518 6.518 7 N -1.118 6.118 8 S 2.611 3.389 9 O -0.975 6.975 10 O -0.929 6.929 11 C -0.579 4.579 12 C 0.003 3.997 13 C -0.498 4.498 14 H 0.090 0.910 15 C 0.088 3.912 16 N -0.883 5.883 17 Si 0.868 3.132 18 H -0.277 1.277 19 H -0.291 1.291 20 H -0.256 1.256 21 C -0.187 4.187 22 C -0.184 4.184 23 C -0.177 4.177 24 C -0.191 4.191 25 C -0.206 4.206 26 H 0.076 0.924 27 H 0.093 0.907 28 H 0.107 0.893 29 H 0.121 0.879 30 H 0.104 0.896 31 H 0.410 0.590 32 H 0.411 0.589 33 H 0.132 0.868 34 H 0.106 0.894 35 H 0.266 0.734 36 H 0.084 0.916 37 H 0.096 0.904 38 H 0.093 0.907 39 H 0.074 0.926 40 H 0.115 0.885 41 H 0.116 0.884 42 H 0.096 0.904 43 H 0.095 0.905 44 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.511 9.814 -6.225 19.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.262 4.262 2 C 0.135 3.865 3 C -0.158 4.158 4 C 0.330 3.670 5 O -0.382 6.382 6 O -0.331 6.331 7 N -0.873 5.873 8 S 2.708 3.292 9 O -0.966 6.966 10 O -0.918 6.918 11 C -0.711 4.711 12 C 0.000 4.000 13 C -0.535 4.535 14 H 0.108 0.892 15 C -0.117 4.117 16 N -0.519 5.519 17 Si 0.696 3.304 18 H -0.203 1.203 19 H -0.217 1.217 20 H -0.180 1.180 21 C -0.224 4.224 22 C -0.222 4.222 23 C -0.197 4.197 24 C -0.228 4.228 25 C -0.242 4.242 26 H 0.095 0.905 27 H 0.112 0.888 28 H 0.125 0.875 29 H 0.139 0.861 30 H 0.123 0.877 31 H 0.269 0.731 32 H 0.244 0.756 33 H 0.150 0.850 34 H 0.124 0.876 35 H 0.076 0.924 36 H 0.102 0.898 37 H 0.115 0.885 38 H 0.111 0.889 39 H 0.093 0.907 40 H 0.133 0.867 41 H 0.134 0.866 42 H 0.114 0.886 43 H 0.113 0.887 44 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.659 9.655 -5.201 18.307 hybrid contribution 0.665 -0.457 -2.151 2.297 sum 15.324 9.198 -7.352 19.326 Atomic orbital electron populations 1.23178 0.90227 1.05770 1.07076 1.19280 0.95757 0.88232 0.83272 1.21787 1.03765 0.95623 0.94578 1.23038 0.84227 0.75879 0.83855 1.90655 1.18312 1.58268 1.70924 1.84541 1.45288 1.61961 1.41313 1.56059 1.32648 1.57557 1.41046 1.05099 0.73747 0.75100 0.75300 1.93513 1.69559 1.81390 1.52124 1.93638 1.44985 1.70192 1.83010 1.30478 1.06925 1.16064 1.17621 1.18896 0.95023 0.86448 0.99622 1.20322 0.88994 1.43685 1.00496 0.89217 1.24920 0.94429 0.93999 0.98322 1.69889 1.03986 1.46742 1.31248 0.87006 0.80075 0.79421 0.83920 1.20250 1.21743 1.18047 1.23120 1.00642 1.06095 0.92572 1.23002 1.01859 0.99351 0.98034 1.23043 1.05239 1.00697 0.90734 1.23522 0.96724 1.04899 0.97687 1.23691 0.94735 1.02284 1.03524 0.90505 0.88776 0.87522 0.86103 0.87726 0.73069 0.75646 0.84959 0.87575 0.92369 0.89800 0.88511 0.88868 0.90704 0.86680 0.86646 0.88580 0.88656 0.86289 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.54 6.17 37.16 0.23 -3.31 16 2 C 0.22 2.99 0.87 -131.82 -0.12 2.87 16 3 C -0.12 -1.19 4.61 -27.88 -0.13 -1.32 16 4 C 0.49 5.05 4.82 36.01 0.17 5.22 16 5 O -0.49 -6.63 12.36 -18.75 -0.23 -6.86 16 6 O -0.52 -3.69 11.57 -39.26 -0.45 -4.15 16 7 N -1.12 -15.26 5.34 0.53 0.00 -15.26 16 8 S 2.61 49.36 4.85 -107.50 -0.52 48.84 16 9 O -0.98 -19.91 18.08 -57.54 -1.04 -20.95 16 10 O -0.93 -20.97 13.91 -57.54 -0.80 -21.77 16 11 C -0.58 -11.20 3.94 37.16 0.15 -11.06 16 12 C 0.00 0.07 0.73 -155.65 -0.11 -0.05 16 13 C -0.50 -13.65 8.78 -34.44 -0.30 -13.95 16 14 H 0.09 2.74 8.06 -52.48 -0.42 2.32 16 15 C 0.09 2.46 5.47 -17.82 -0.10 2.36 16 16 N -0.88 -26.48 13.96 55.43 0.77 -25.71 16 17 Si 0.87 20.84 24.95 -169.99 -4.24 16.60 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 19 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 20 H -0.26 -5.62 5.80 56.52 0.33 -5.29 16 21 C -0.19 -3.84 9.93 -26.69 -0.26 -4.10 16 22 C -0.18 -3.78 7.67 -26.69 -0.20 -3.99 16 23 C -0.18 -2.21 4.81 -90.62 -0.44 -2.65 16 24 C -0.19 -2.35 9.08 -26.73 -0.24 -2.59 16 25 C -0.21 -2.06 9.19 -26.74 -0.25 -2.31 16 26 H 0.08 1.52 4.60 -51.93 -0.24 1.28 16 27 H 0.09 1.72 6.85 -51.93 -0.36 1.37 16 28 H 0.11 1.79 4.22 -51.93 -0.22 1.57 16 29 H 0.12 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.10 0.78 7.44 -51.93 -0.39 0.39 16 31 H 0.41 1.42 9.10 45.56 0.41 1.83 16 32 H 0.41 4.32 8.80 -34.47 -0.30 4.02 16 33 H 0.13 2.57 4.19 -51.92 -0.22 2.36 16 34 H 0.11 1.68 8.04 -51.92 -0.42 1.27 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.08 1.56 8.14 -51.93 -0.42 1.13 16 37 H 0.10 1.99 8.14 -51.93 -0.42 1.56 16 38 H 0.09 2.00 7.42 -51.93 -0.39 1.61 16 39 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 40 H 0.12 1.44 7.14 -51.93 -0.37 1.07 16 41 H 0.12 1.52 4.32 -51.93 -0.22 1.29 16 42 H 0.10 1.15 8.14 -51.93 -0.42 0.73 16 43 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.12 1.05 3.19 -51.93 -0.17 0.89 16 LS Contribution 341.62 15.07 5.15 5.15 Total: -1.00 -35.16 341.62 -8.00 -43.16 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -5.04 Total: 15.83 kcal Atomic # 6 Polarization: -33.27 SS G_CDS: -1.60 Total: -34.87 kcal Atomic # 7 Polarization: -41.75 SS G_CDS: 0.78 Total: -40.97 kcal Atomic # 8 Polarization: -51.20 SS G_CDS: -2.53 Total: -53.73 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -4.24 Total: 16.60 kcal Atomic # 16 Polarization: 49.36 SS G_CDS: -0.52 Total: 48.84 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -35.16 -8.00 -43.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592329226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.369 kcal (2) G-P(sol) polarization free energy of solvation -35.158 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.530 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds