Wall clock time and date at job start Tue Mar 31 2020 16:49:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46987 * 2 1 4 4 C 1.50703 * 109.47196 * 300.83083 * 3 2 1 5 5 O 1.20831 * 119.99505 * 47.84372 * 4 3 2 6 6 O 1.34231 * 120.00292 * 227.83720 * 4 3 2 7 7 N 1.46493 * 109.47157 * 119.99979 * 2 1 3 8 8 S 1.65606 * 119.99907 * 24.83463 * 7 2 1 9 9 O 1.42107 * 104.27534 * 177.25648 * 8 7 2 10 10 O 1.42095 * 104.27822 * 305.10996 * 8 7 2 11 11 C 1.81394 * 104.45032 * 61.18227 * 8 7 2 12 12 C 1.52998 * 109.47043 * 184.14528 * 11 8 7 13 13 C 1.50700 * 115.54963 * 72.03210 * 12 11 8 14 14 H 1.08005 * 119.99171 * 265.96546 * 13 12 11 15 15 C 1.37868 * 120.00125 * 85.96866 * 13 12 11 16 16 N 1.31520 * 119.99840 * 177.69120 * 15 13 12 17 17 Si 1.86800 * 120.00088 * 357.69007 * 15 13 12 18 18 H 1.48501 * 109.47042 * 90.66361 * 17 15 13 19 19 H 1.48501 * 109.47125 * 210.65972 * 17 15 13 20 20 H 1.48493 * 109.47317 * 330.66237 * 17 15 13 21 21 C 1.53008 * 117.49938 * 286.35691 * 12 11 8 22 22 C 1.53007 * 117.49899 * 217.69726 * 12 11 8 23 23 C 1.53003 * 109.46939 * 239.99943 * 2 1 3 24 24 C 1.53001 * 117.49744 * 50.02455 * 23 2 1 25 25 C 1.52994 * 117.49576 * 118.64365 * 23 2 1 26 26 H 1.08994 * 109.47289 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47247 * 300.00172 * 1 2 3 28 28 H 1.09003 * 109.47061 * 59.99887 * 1 2 3 29 29 H 1.08993 * 109.47690 * 60.83608 * 3 2 1 30 30 H 1.09007 * 109.46897 * 180.83781 * 3 2 1 31 31 H 0.96695 * 116.99636 * 180.02562 * 6 4 3 32 32 H 0.96997 * 120.00521 * 204.83899 * 7 2 1 33 33 H 1.09000 * 109.47270 * 304.14511 * 11 8 7 34 34 H 1.09000 * 109.47279 * 64.14667 * 11 8 7 35 35 H 0.97004 * 119.99850 * 179.97438 * 16 15 13 36 36 H 1.09003 * 117.49725 * 0.02562 * 21 12 11 37 37 H 1.08999 * 117.49775 * 145.01931 * 21 12 11 38 38 H 1.08996 * 117.50037 * 214.97773 * 22 12 11 39 39 H 1.08998 * 117.49303 * 359.97438 * 22 12 11 40 40 H 1.08993 * 115.55698 * 264.33813 * 23 2 1 41 41 H 1.09001 * 117.49982 * 359.97438 * 24 23 2 42 42 H 1.09003 * 117.49919 * 214.98054 * 24 23 2 43 43 H 1.09004 * 117.49683 * 145.02373 * 25 23 2 44 44 H 1.09000 * 117.50353 * 0.02562 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.5209 2.1588 -1.2201 5 8 0.3509 2.0837 -1.5125 6 8 2.3581 2.8804 -1.9817 7 7 2.0183 -0.6906 1.1961 8 16 1.0672 -1.8195 1.9467 9 8 1.8777 -2.3129 3.0046 10 8 -0.1476 -1.1325 2.2139 11 6 0.8100 -3.1023 0.6902 12 6 -0.1484 -4.1637 1.2339 13 6 -1.5893 -3.7386 1.3530 14 1 -1.9607 -3.3456 2.2879 15 6 -2.4332 -3.8515 0.2686 16 7 -3.7014 -3.5232 0.3854 17 14 -1.7753 -4.4705 -1.3665 18 1 -1.9213 -5.9469 -1.4318 19 1 -2.5413 -3.8479 -2.4759 20 1 -0.3405 -4.1090 -1.4916 21 6 0.3928 -5.1299 2.2897 22 6 0.1296 -5.6223 0.8644 23 6 2.0400 -0.7213 -1.2493 24 6 1.4534 -0.2989 -2.5978 25 6 2.8888 0.0856 -2.2338 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 1.6890 1.9520 0.8973 30 1 3.1299 1.4425 -0.0150 31 1 1.9788 3.3222 -2.7537 32 1 2.8987 -0.4866 1.5485 33 1 0.3833 -2.6524 -0.2062 34 1 1.7650 -3.5667 0.4444 35 1 -4.2951 -3.6022 -0.3777 36 1 1.4315 -5.0090 2.5973 37 1 -0.2935 -5.4583 3.0703 38 1 -0.7296 -6.2744 0.7079 39 1 0.9950 -5.8254 0.2336 40 1 2.2882 -1.7742 -1.1159 41 1 0.7038 0.4925 -2.5949 42 1 1.3157 -1.0740 -3.3517 43 1 3.6955 -0.4365 -2.7483 44 1 3.0843 1.1302 -1.9913 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592329226.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:49:35 Heat of formation + Delta-G solvation = -110.111885 kcal Electronic energy + Delta-G solvation = -29164.870593 eV Core-core repulsion = 25211.416206 eV Total energy + Delta-G solvation = -3953.454386 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.29946 -39.38359 -38.86653 -38.00123 -37.15174 -36.84674 -35.72534 -34.26876 -31.69046 -30.43455 -29.28175 -27.58476 -25.10866 -23.39487 -23.10616 -22.93161 -21.39252 -20.60090 -20.05454 -19.13919 -19.01416 -18.51173 -18.28370 -17.14133 -17.07371 -16.84701 -16.57482 -16.03163 -15.60221 -15.55658 -15.05793 -14.83958 -14.58475 -14.47297 -14.18782 -13.95068 -13.70287 -13.50490 -13.26624 -13.08319 -13.03260 -12.87603 -12.72514 -12.65961 -12.44288 -12.24535 -12.11640 -12.05280 -11.77640 -11.68560 -11.63779 -11.39524 -11.12789 -11.01215 -10.90588 -10.71431 -10.56900 -10.15792 -8.29161 -6.40230 -0.59963 1.14474 1.33178 1.35260 1.47457 1.75554 2.25973 2.35496 2.78081 2.83091 3.01721 3.12684 3.38992 3.44717 3.56770 3.73176 3.83662 3.96695 4.09600 4.13137 4.27196 4.28235 4.33150 4.35696 4.39728 4.55930 4.69389 4.72951 4.82640 4.82753 4.93884 4.96905 5.03645 5.12051 5.20458 5.22456 5.28620 5.41796 5.47477 5.61903 5.80195 6.17762 6.25229 6.71237 7.01541 7.30582 8.86762 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014150 B = 0.005624 C = 0.004883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1978.291177 B = 4977.511047 C = 5732.978348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.227 3.773 3 C -0.122 4.122 4 C 0.494 3.506 5 O -0.531 6.531 6 O -0.503 6.503 7 N -1.097 6.097 8 S 2.621 3.379 9 O -0.992 6.992 10 O -0.979 6.979 11 C -0.578 4.578 12 C -0.030 4.030 13 C -0.496 4.496 14 H 0.032 0.968 15 C 0.028 3.972 16 N -0.942 5.942 17 Si 0.925 3.075 18 H -0.265 1.265 19 H -0.298 1.298 20 H -0.216 1.216 21 C -0.183 4.183 22 C -0.169 4.169 23 C -0.194 4.194 24 C -0.210 4.210 25 C -0.172 4.172 26 H 0.044 0.956 27 H 0.069 0.931 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.143 0.857 31 H 0.429 0.571 32 H 0.430 0.570 33 H 0.131 0.869 34 H 0.153 0.847 35 H 0.266 0.734 36 H 0.112 0.888 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.117 0.883 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.097 0.903 43 H 0.115 0.885 44 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.289 9.744 -8.470 24.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.263 4.263 2 C 0.137 3.863 3 C -0.161 4.161 4 C 0.338 3.662 5 O -0.422 6.422 6 O -0.317 6.317 7 N -0.857 5.857 8 S 2.717 3.283 9 O -0.983 6.983 10 O -0.969 6.969 11 C -0.710 4.710 12 C -0.032 4.032 13 C -0.533 4.533 14 H 0.051 0.949 15 C -0.171 4.171 16 N -0.580 5.580 17 Si 0.749 3.251 18 H -0.190 1.190 19 H -0.226 1.226 20 H -0.138 1.138 21 C -0.220 4.220 22 C -0.207 4.207 23 C -0.214 4.214 24 C -0.248 4.248 25 C -0.208 4.208 26 H 0.063 0.937 27 H 0.088 0.912 28 H 0.126 0.874 29 H 0.144 0.856 30 H 0.161 0.839 31 H 0.291 0.709 32 H 0.267 0.733 33 H 0.149 0.851 34 H 0.171 0.829 35 H 0.075 0.925 36 H 0.130 0.870 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.135 0.865 40 H 0.137 0.863 41 H 0.121 0.879 42 H 0.115 0.885 43 H 0.133 0.867 44 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.501 9.597 -7.426 22.968 hybrid contribution -0.858 -0.337 -1.366 1.648 sum 18.643 9.260 -8.792 22.597 Atomic orbital electron populations 1.23112 0.93891 1.03283 1.05992 1.19217 0.92958 0.90607 0.83471 1.21825 1.06006 0.93275 0.94996 1.23003 0.83747 0.75578 0.83863 1.90653 1.20048 1.59712 1.71789 1.84475 1.44233 1.61289 1.41750 1.55434 1.32945 1.56223 1.41087 1.04468 0.73069 0.75396 0.75318 1.93479 1.69526 1.81943 1.53329 1.93600 1.47796 1.71427 1.84078 1.30358 1.08172 1.15290 1.17143 1.18799 0.93054 0.88571 1.02800 1.20376 0.92164 1.42564 0.98221 0.94945 1.25826 0.94364 0.94345 1.02562 1.70063 1.05900 1.49564 1.32503 0.86080 0.81576 0.79159 0.78321 1.19046 1.22556 1.13775 1.23193 1.01722 1.04607 0.92513 1.23107 1.02802 0.96546 0.98263 1.23021 1.06929 1.01295 0.90131 1.23541 0.98467 1.05049 0.97709 1.23789 0.93593 1.02747 1.00717 0.93666 0.91158 0.87433 0.85588 0.83872 0.70900 0.73307 0.85083 0.82908 0.92510 0.87016 0.89814 0.90137 0.86533 0.86269 0.87935 0.88491 0.86668 0.84981 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -7.28 6.17 71.98 0.44 -6.83 16 2 C 0.23 5.61 0.87 3.61 0.00 5.61 16 3 C -0.12 -2.11 4.61 29.85 0.14 -1.97 16 4 C 0.49 9.02 4.82 71.24 0.34 9.36 16 5 O -0.53 -13.92 12.36 21.95 0.27 -13.65 16 6 O -0.50 -5.24 11.57 -51.43 -0.60 -5.84 16 7 N -1.10 -27.56 5.34 -152.22 -0.81 -28.38 16 8 S 2.62 97.74 4.85 -56.49 -0.27 97.47 16 9 O -0.99 -39.22 18.08 -127.65 -2.31 -41.53 16 10 O -0.98 -46.57 13.91 -127.65 -1.78 -48.35 16 11 C -0.58 -21.05 3.94 71.98 0.28 -20.77 16 12 C -0.03 -1.32 0.73 -52.92 -0.04 -1.36 16 13 C -0.50 -28.43 8.78 25.60 0.22 -28.20 16 14 H 0.03 2.16 8.06 -2.91 -0.02 2.13 16 15 C 0.03 1.61 5.47 84.65 0.46 2.07 16 16 N -0.94 -59.98 13.96 21.44 0.30 -59.68 16 17 Si 0.93 42.77 24.95 68.60 1.71 44.48 16 18 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 19 H -0.30 -14.07 7.11 99.48 0.71 -13.37 16 20 H -0.22 -8.47 5.80 99.48 0.58 -7.89 16 21 C -0.18 -7.21 9.93 30.62 0.30 -6.91 16 22 C -0.17 -6.41 7.67 30.62 0.23 -6.18 16 23 C -0.19 -4.19 4.81 -10.79 -0.05 -4.24 16 24 C -0.21 -4.63 9.08 30.59 0.28 -4.35 16 25 C -0.17 -2.64 9.19 30.59 0.28 -2.36 16 26 H 0.04 1.86 4.60 -2.39 -0.01 1.85 16 27 H 0.07 2.75 6.85 -2.38 -0.02 2.74 16 28 H 0.11 3.76 4.22 -2.39 -0.01 3.75 16 29 H 0.13 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.14 1.38 7.44 -2.38 -0.02 1.36 16 31 H 0.43 1.45 9.10 -74.06 -0.67 0.78 16 32 H 0.43 7.58 8.80 -96.75 -0.85 6.73 16 33 H 0.13 4.86 4.19 -2.39 -0.01 4.85 16 34 H 0.15 4.06 8.04 -2.39 -0.02 4.04 16 35 H 0.27 15.86 8.31 -92.71 -0.77 15.09 16 36 H 0.11 3.78 8.14 -2.39 -0.02 3.76 16 37 H 0.08 3.46 8.14 -2.39 -0.02 3.44 16 38 H 0.08 3.27 7.42 -2.39 -0.02 3.25 16 39 H 0.12 3.50 8.14 -2.39 -0.02 3.48 16 40 H 0.12 2.47 7.14 -2.39 -0.02 2.46 16 41 H 0.10 2.57 4.32 -2.39 -0.01 2.56 16 42 H 0.10 2.08 8.14 -2.39 -0.02 2.07 16 43 H 0.12 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.13 1.65 3.19 -2.39 -0.01 1.64 16 Total: -1.00 -83.31 341.62 -1.16 -84.47 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: -0.58 Total: 37.14 kcal Atomic # 6 Polarization: -69.04 SS G_CDS: 2.91 Total: -66.14 kcal Atomic # 7 Polarization: -87.55 SS G_CDS: -0.51 Total: -88.06 kcal Atomic # 8 Polarization: -104.95 SS G_CDS: -4.41 Total: -109.36 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 1.71 Total: 44.48 kcal Atomic # 16 Polarization: 97.74 SS G_CDS: -0.27 Total: 97.47 kcal Total: -83.31 -1.16 -84.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592329226.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.639 kcal (2) G-P(sol) polarization free energy of solvation -83.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds