Wall clock time and date at job start Tue Mar 31 2020 16:05:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31350 * 119.62920 * 2 1 4 4 C 1.32789 * 121.76744 * 180.02562 * 3 2 1 5 5 C 1.48040 * 119.59916 * 180.02562 * 4 3 2 6 6 O 1.21528 * 120.00127 * 179.97438 * 5 4 3 7 7 N 1.34777 * 120.00218 * 359.97438 * 5 4 3 8 8 C 1.46497 * 120.00431 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47399 * 180.02562 * 8 7 5 10 10 O 1.21292 * 120.00034 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99924 * 180.02562 * 9 8 7 12 12 C 1.37096 * 119.99594 * 179.97438 * 11 9 8 13 13 H 1.07993 * 120.00533 * 0.02562 * 12 11 9 14 14 C 1.38955 * 119.99493 * 179.97438 * 12 11 9 15 15 N 1.31404 * 120.00061 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99756 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46846 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47028 * 120.00243 * 16 14 12 19 19 H 1.48501 * 109.46593 * 240.00337 * 16 14 12 20 20 C 1.39436 * 120.80318 * 359.97438 * 4 3 2 21 21 C 1.38305 * 119.18284 * 0.02562 * 20 4 3 22 22 C 1.39667 * 119.63523 * 180.02562 * 2 1 3 23 23 C 1.48350 * 120.43699 * 0.25005 * 22 2 1 24 24 N 1.34093 * 126.68298 * 359.40803 * 23 22 2 25 25 N 1.28986 * 107.26530 * 179.83653 * 24 23 22 26 26 N 1.28728 * 108.95474 * 0.43068 * 25 24 23 27 27 H 0.96997 * 125.33552 * 179.71681 * 26 25 24 28 28 N 1.28870 * 109.33073 * 359.73116 * 26 25 24 29 29 H 1.09003 * 109.46581 * 269.97486 * 1 2 3 30 30 H 1.08994 * 109.47401 * 29.97387 * 1 2 3 31 31 H 1.09002 * 109.46981 * 149.98152 * 1 2 3 32 32 H 0.97008 * 119.99623 * 0.02562 * 7 5 4 33 33 H 1.09005 * 109.46948 * 300.00404 * 8 7 5 34 34 H 1.09001 * 109.46770 * 59.99948 * 8 7 5 35 35 H 0.96995 * 119.99618 * 0.02562 * 11 9 8 36 36 H 0.97010 * 120.00002 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.41046 * 180.02562 * 20 4 3 38 38 H 1.07997 * 120.81083 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1564 1.1418 0.0000 4 6 3.4834 1.1913 -0.0005 5 6 4.1661 2.5049 0.0001 6 8 5.3801 2.5588 0.0001 7 7 3.4412 3.6411 0.0006 8 6 4.1167 4.9411 0.0018 9 6 3.0876 6.0420 0.0028 10 8 1.9061 5.7678 0.0021 11 7 3.4802 7.3313 0.0035 12 6 2.5440 8.3328 0.0039 13 1 1.4920 8.0887 0.0041 14 6 2.9487 9.6621 0.0051 15 7 4.2287 9.9592 0.0053 16 14 1.6731 11.0268 0.0063 17 1 0.3123 10.4323 0.0052 18 1 1.8466 11.8654 1.2195 19 1 1.8465 11.8675 -1.2055 20 6 4.2416 0.0211 -0.0005 21 6 3.5950 -1.2015 -0.0005 22 6 2.1977 -1.2140 -0.0005 23 6 1.4575 -2.4997 -0.0067 24 7 0.1259 -2.6574 -0.0011 25 7 -0.1094 -3.9256 -0.0132 26 7 1.0114 -4.5588 -0.0169 27 1 1.1106 -5.5237 -0.0217 28 7 1.9810 -3.7099 -0.0129 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 2.4720 3.5981 0.0010 33 1 4.7399 5.0258 0.8921 34 1 4.7405 5.0271 -0.8879 35 1 4.4250 7.5506 0.0029 36 1 4.5113 10.8872 0.0058 37 1 5.3206 0.0688 -0.0005 38 1 4.1562 -2.1241 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001592348996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:51 Heat of formation + Delta-G solvation = 95.460577 kcal Electronic energy + Delta-G solvation = -26225.109498 eV Core-core repulsion = 22106.170610 eV Total energy + Delta-G solvation = -4118.938888 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -44.92124 -40.89122 -39.21431 -38.04149 -35.15248 -34.57879 -34.31718 -33.71296 -33.23220 -31.86432 -31.33825 -28.28806 -27.88451 -25.91176 -24.91750 -24.33436 -22.88759 -22.33969 -20.51664 -19.74719 -19.58826 -18.29016 -17.80998 -17.61380 -17.03548 -16.51537 -15.73429 -15.54397 -15.21706 -14.86875 -14.72289 -14.61675 -14.29161 -13.99962 -13.74891 -13.71742 -13.25333 -13.00014 -12.53142 -12.47414 -12.25729 -12.17362 -11.99211 -11.84983 -11.61148 -11.57835 -11.19249 -11.12118 -10.39317 -10.37007 -10.27939 -10.06582 -9.73009 -9.62052 -9.14790 -8.79916 -8.60191 -8.07392 -6.49070 -3.90694 -0.08061 0.68771 0.89712 1.73349 1.76793 2.74690 3.06422 3.12613 3.20904 3.25345 3.32754 3.65059 3.67705 3.77228 3.90638 4.13688 4.32138 4.62140 4.66667 4.76004 4.88722 4.98201 5.05059 5.19296 5.32860 5.48166 5.61263 5.65167 5.82317 5.88664 5.90226 5.94403 6.03078 6.08237 6.31152 6.61203 7.41695 7.49106 7.68041 7.81865 7.94631 8.32132 8.48221 9.07543 9.41779 9.89935 10.67914 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.026166 B = 0.002051 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.815710 B =13648.075598 C =14697.433207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.179 3.821 3 N -0.452 5.452 4 C 0.115 3.885 5 C 0.564 3.436 6 O -0.539 6.539 7 N -0.682 5.682 8 C 0.105 3.895 9 C 0.428 3.572 10 O -0.592 6.592 11 N -0.550 5.550 12 C -0.303 4.303 13 H 0.106 0.894 14 C 0.025 3.975 15 N -0.895 5.895 16 Si 0.932 3.068 17 H -0.267 1.267 18 H -0.281 1.281 19 H -0.281 1.281 20 C -0.124 4.124 21 C -0.037 4.037 22 C -0.063 4.063 23 C 0.227 3.773 24 N -0.260 5.260 25 N -0.048 5.048 26 N -0.224 5.224 27 H 0.476 0.524 28 N -0.291 5.291 29 H 0.085 0.915 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.423 0.577 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.396 0.604 36 H 0.273 0.727 37 H 0.158 0.842 38 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.945 -28.228 -0.081 28.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.036 3.964 3 N -0.164 5.164 4 C -0.024 4.024 5 C 0.348 3.652 6 O -0.416 6.416 7 N -0.335 5.335 8 C -0.022 4.022 9 C 0.213 3.787 10 O -0.478 6.478 11 N -0.185 5.185 12 C -0.432 4.432 13 H 0.124 0.876 14 C -0.178 4.178 15 N -0.535 5.535 16 Si 0.759 3.241 17 H -0.191 1.191 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.145 4.145 21 C -0.065 4.065 22 C -0.069 4.069 23 C -0.053 4.053 24 N -0.133 5.133 25 N -0.043 5.043 26 N -0.070 5.070 27 H 0.331 0.669 28 N -0.143 5.143 29 H 0.104 0.896 30 H 0.102 0.898 31 H 0.123 0.877 32 H 0.263 0.737 33 H 0.106 0.894 34 H 0.106 0.894 35 H 0.230 0.770 36 H 0.083 0.917 37 H 0.176 0.824 38 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -2.791 -27.697 -0.079 27.837 hybrid contribution 0.637 -0.291 0.034 0.701 sum -2.154 -27.988 -0.045 28.071 Atomic orbital electron populations 1.21217 0.86966 1.05336 1.04356 1.21487 0.97783 0.85874 0.91249 1.67635 1.08529 1.28733 1.11479 1.21421 0.89580 0.94524 0.96923 1.17738 0.86455 0.83164 0.77876 1.90787 1.12785 1.87003 1.51053 1.45607 1.12512 1.04212 1.71142 1.21063 0.95166 0.82413 1.03564 1.19705 0.89288 0.83978 0.85681 1.90526 1.17695 1.82607 1.56938 1.41789 1.10058 1.03837 1.62815 1.19789 0.90895 0.84575 1.47988 0.87571 1.25325 0.96965 0.98632 0.96875 1.69623 1.14231 1.20141 1.49554 0.85758 0.80455 0.80105 0.77779 1.19097 1.20650 1.20654 1.22036 1.02698 0.90811 0.98956 1.21592 0.92245 0.99105 0.93567 1.18273 0.92924 0.88226 1.07472 1.23336 0.88335 0.91904 1.01772 1.76191 1.13409 1.05830 1.17893 1.78978 1.10836 1.00266 1.14197 1.47724 1.01089 1.12483 1.45724 0.66903 1.74939 1.17809 0.99590 1.21915 0.89609 0.89761 0.87663 0.73654 0.89434 0.89420 0.77048 0.91683 0.82420 0.83074 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 9.36 36.01 0.34 -0.89 16 2 C 0.18 2.10 6.81 -82.26 -0.56 1.54 16 3 N -0.45 -6.28 9.43 -5.82 -0.05 -6.33 16 4 C 0.12 1.60 6.75 -82.99 -0.56 1.04 16 5 C 0.56 9.29 7.81 -12.24 -0.10 9.20 16 6 O -0.54 -9.72 16.31 5.34 0.09 -9.64 16 7 N -0.68 -12.07 5.52 -62.37 -0.34 -12.41 16 8 C 0.11 1.96 6.15 -5.20 -0.03 1.93 16 9 C 0.43 9.92 7.85 -10.98 -0.09 9.83 16 10 O -0.59 -15.44 15.24 5.55 0.08 -15.36 16 11 N -0.55 -13.67 5.29 -10.96 -0.06 -13.73 16 12 C -0.30 -8.27 9.68 -14.93 -0.14 -8.41 16 13 H 0.11 3.03 7.16 -52.49 -0.38 2.65 16 14 C 0.02 0.65 5.50 -17.47 -0.10 0.55 16 15 N -0.90 -23.93 13.05 55.50 0.72 -23.21 16 16 Si 0.93 20.65 29.55 -169.99 -5.02 15.63 16 17 H -0.27 -5.91 7.11 56.52 0.40 -5.50 16 18 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 19 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 20 C -0.12 -1.35 9.62 -39.11 -0.38 -1.73 16 21 C -0.04 -0.34 9.82 -39.00 -0.38 -0.72 16 22 C -0.06 -0.65 5.90 -104.64 -0.62 -1.27 16 23 C 0.23 2.15 7.79 -156.27 -1.22 0.93 16 24 N -0.26 -2.52 9.10 32.14 0.29 -2.23 16 25 N -0.05 -0.38 13.47 60.35 0.81 0.44 16 26 N -0.22 -1.14 7.90 60.35 0.48 -0.67 16 27 H 0.48 0.10 8.96 -340.37 -3.05 -2.95 16 28 N -0.29 -2.20 12.15 32.16 0.39 -1.81 16 29 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.08 0.87 8.14 -51.93 -0.42 0.44 16 31 H 0.11 1.02 5.14 -51.93 -0.27 0.75 16 32 H 0.42 7.81 6.76 -40.82 -0.28 7.54 16 33 H 0.09 1.52 8.14 -51.93 -0.42 1.10 16 34 H 0.09 1.53 8.14 -51.93 -0.42 1.10 16 35 H 0.40 9.40 7.90 -40.82 -0.32 9.08 16 36 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 37 H 0.16 1.53 7.63 -52.49 -0.40 1.13 16 38 H 0.15 0.98 7.95 -52.49 -0.42 0.57 16 LS Contribution 343.74 15.07 5.18 5.18 Total: -1.00 -33.54 343.74 -7.20 -40.74 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: -5.94 Total: 11.40 kcal Atomic # 6 Polarization: 15.82 SS G_CDS: -3.83 Total: 11.99 kcal Atomic # 7 Polarization: -62.19 SS G_CDS: 2.24 Total: -59.95 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: 0.17 Total: -24.99 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -33.54 -7.20 -40.74 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592348996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 136.203 kcal (2) G-P(sol) polarization free energy of solvation -33.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.659 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.461 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds