Wall clock time and date at job start Tue Mar 31 2020 16:05:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.31350 * 119.62920 * 2 1 4 4 C 1.32789 * 121.76744 * 180.02562 * 3 2 1 5 5 C 1.48040 * 119.59916 * 180.02562 * 4 3 2 6 6 O 1.21528 * 120.00127 * 179.97438 * 5 4 3 7 7 N 1.34777 * 120.00218 * 359.97438 * 5 4 3 8 8 C 1.46497 * 120.00431 * 179.97438 * 7 5 4 9 9 C 1.50699 * 109.47399 * 180.02562 * 8 7 5 10 10 O 1.21292 * 120.00034 * 359.97438 * 9 8 7 11 11 N 1.34778 * 119.99924 * 180.02562 * 9 8 7 12 12 C 1.37096 * 119.99594 * 179.97438 * 11 9 8 13 13 H 1.07993 * 120.00533 * 0.02562 * 12 11 9 14 14 C 1.38955 * 119.99493 * 179.97438 * 12 11 9 15 15 N 1.31404 * 120.00061 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 119.99756 * 180.02562 * 14 12 11 17 17 H 1.48502 * 109.46846 * 359.97438 * 16 14 12 18 18 H 1.48497 * 109.47028 * 120.00243 * 16 14 12 19 19 H 1.48501 * 109.46593 * 240.00337 * 16 14 12 20 20 C 1.39436 * 120.80318 * 359.97438 * 4 3 2 21 21 C 1.38305 * 119.18284 * 0.02562 * 20 4 3 22 22 C 1.39667 * 119.63523 * 180.02562 * 2 1 3 23 23 C 1.48350 * 120.43699 * 0.25005 * 22 2 1 24 24 N 1.34093 * 126.68298 * 359.40803 * 23 22 2 25 25 N 1.28986 * 107.26530 * 179.83653 * 24 23 22 26 26 N 1.28728 * 108.95474 * 0.43068 * 25 24 23 27 27 H 0.96997 * 125.33552 * 179.71681 * 26 25 24 28 28 N 1.28870 * 109.33073 * 359.73116 * 26 25 24 29 29 H 1.09003 * 109.46581 * 269.97486 * 1 2 3 30 30 H 1.08994 * 109.47401 * 29.97387 * 1 2 3 31 31 H 1.09002 * 109.46981 * 149.98152 * 1 2 3 32 32 H 0.97008 * 119.99623 * 0.02562 * 7 5 4 33 33 H 1.09005 * 109.46948 * 300.00404 * 8 7 5 34 34 H 1.09001 * 109.46770 * 59.99948 * 8 7 5 35 35 H 0.96995 * 119.99618 * 0.02562 * 11 9 8 36 36 H 0.97010 * 120.00002 * 179.97438 * 15 14 12 37 37 H 1.08000 * 120.41046 * 180.02562 * 20 4 3 38 38 H 1.07997 * 120.81083 * 180.02562 * 21 20 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1564 1.1418 0.0000 4 6 3.4834 1.1913 -0.0005 5 6 4.1661 2.5049 0.0001 6 8 5.3801 2.5588 0.0001 7 7 3.4412 3.6411 0.0006 8 6 4.1167 4.9411 0.0018 9 6 3.0876 6.0420 0.0028 10 8 1.9061 5.7678 0.0021 11 7 3.4802 7.3313 0.0035 12 6 2.5440 8.3328 0.0039 13 1 1.4920 8.0887 0.0041 14 6 2.9487 9.6621 0.0051 15 7 4.2287 9.9592 0.0053 16 14 1.6731 11.0268 0.0063 17 1 0.3123 10.4323 0.0052 18 1 1.8466 11.8654 1.2195 19 1 1.8465 11.8675 -1.2055 20 6 4.2416 0.0211 -0.0005 21 6 3.5950 -1.2015 -0.0005 22 6 2.1977 -1.2140 -0.0005 23 6 1.4575 -2.4997 -0.0067 24 7 0.1259 -2.6574 -0.0011 25 7 -0.1094 -3.9256 -0.0132 26 7 1.0114 -4.5588 -0.0169 27 1 1.1106 -5.5237 -0.0217 28 7 1.9810 -3.7099 -0.0129 29 1 -0.3632 -0.0005 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5141 32 1 2.4720 3.5981 0.0010 33 1 4.7399 5.0258 0.8921 34 1 4.7405 5.0271 -0.8879 35 1 4.4250 7.5506 0.0029 36 1 4.5113 10.8872 0.0058 37 1 5.3206 0.0688 -0.0005 38 1 4.1562 -2.1241 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001592348996.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:05:42 Heat of formation + Delta-G solvation = 68.638175 kcal Electronic energy + Delta-G solvation = -26226.272604 eV Core-core repulsion = 22106.170610 eV Total energy + Delta-G solvation = -4120.101995 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 4.16 seconds Orbital eigenvalues (eV) -45.53181 -41.88925 -40.63628 -39.72877 -36.27970 -35.86242 -35.44084 -34.99258 -34.09911 -33.37322 -32.63733 -29.63297 -28.90101 -27.10418 -26.10425 -25.44288 -23.69599 -23.22135 -21.72077 -21.37087 -20.33468 -20.10656 -19.29000 -18.21351 -17.88523 -17.48522 -17.39608 -16.89182 -16.58885 -16.50914 -15.92499 -15.85832 -15.41813 -15.35111 -15.13603 -14.86242 -14.31539 -13.93494 -13.75540 -13.66495 -13.54479 -13.31182 -13.26473 -12.94354 -12.90674 -12.53405 -12.43473 -12.28738 -12.10678 -11.89083 -11.57195 -11.56893 -10.86759 -10.73777 -10.54704 -10.30808 -10.08200 -9.90983 -8.50158 -5.99940 -0.94670 0.07439 0.08600 0.92227 1.35842 1.35996 1.43650 1.57669 1.67439 1.86365 1.91560 2.30789 2.45322 2.67474 2.92316 3.00148 3.11569 3.16902 3.51416 3.66372 3.85466 3.99027 4.17059 4.23460 4.33703 4.40908 4.42223 4.51043 4.71114 4.80953 4.84815 5.02877 5.17682 5.21685 5.39945 5.49384 5.58783 5.92672 6.28934 6.49906 6.65021 6.98273 7.05184 7.06135 7.44873 7.96212 8.66899 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.026166 B = 0.002051 C = 0.001905 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.815710 B =13648.075598 C =14697.433207 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C 0.164 3.836 3 N -0.476 5.476 4 C 0.087 3.913 5 C 0.568 3.432 6 O -0.557 6.557 7 N -0.690 5.690 8 C 0.118 3.882 9 C 0.431 3.569 10 O -0.623 6.623 11 N -0.558 5.558 12 C -0.336 4.336 13 H 0.085 0.915 14 C -0.011 4.011 15 N -0.915 5.915 16 Si 0.997 3.003 17 H -0.271 1.271 18 H -0.271 1.271 19 H -0.271 1.271 20 C -0.113 4.113 21 C -0.024 4.024 22 C -0.053 4.053 23 C 0.211 3.789 24 N -0.280 5.280 25 N -0.054 5.054 26 N -0.194 5.194 27 H 0.496 0.504 28 N -0.281 5.281 29 H 0.089 0.911 30 H 0.076 0.924 31 H 0.112 0.888 32 H 0.419 0.581 33 H 0.103 0.897 34 H 0.103 0.897 35 H 0.400 0.600 36 H 0.280 0.720 37 H 0.171 0.829 38 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.567 -30.258 -0.063 30.299 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.021 3.979 3 N -0.188 5.188 4 C -0.051 4.051 5 C 0.353 3.647 6 O -0.436 6.436 7 N -0.343 5.343 8 C -0.009 4.009 9 C 0.218 3.782 10 O -0.511 6.511 11 N -0.194 5.194 12 C -0.465 4.465 13 H 0.103 0.897 14 C -0.211 4.211 15 N -0.555 5.555 16 Si 0.820 3.180 17 H -0.195 1.195 18 H -0.196 1.196 19 H -0.196 1.196 20 C -0.133 4.133 21 C -0.051 4.051 22 C -0.059 4.059 23 C -0.069 4.069 24 N -0.152 5.152 25 N -0.048 5.048 26 N -0.045 5.045 27 H 0.356 0.644 28 N -0.134 5.134 29 H 0.108 0.892 30 H 0.095 0.905 31 H 0.130 0.870 32 H 0.258 0.742 33 H 0.121 0.879 34 H 0.121 0.879 35 H 0.234 0.766 36 H 0.089 0.911 37 H 0.189 0.811 38 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -2.390 -29.759 -0.061 29.855 hybrid contribution 0.504 0.107 0.029 0.516 sum -1.886 -29.653 -0.032 29.713 Atomic orbital electron populations 1.21205 0.86337 1.05235 1.04585 1.21690 0.98328 0.86023 0.91849 1.67511 1.08820 1.30130 1.12347 1.21138 0.89966 0.93910 1.00099 1.18090 0.86263 0.83647 0.76660 1.90762 1.13476 1.87444 1.51918 1.45645 1.12295 1.04290 1.72050 1.20918 0.93731 0.81329 1.04951 1.20424 0.89726 0.84385 0.83662 1.90501 1.19550 1.83217 1.57808 1.41821 1.09909 1.04179 1.63483 1.19765 0.90536 0.85964 1.50270 0.89703 1.26119 0.98983 1.00203 0.95835 1.69682 1.15441 1.21032 1.49355 0.84816 0.77705 0.77165 0.78319 1.19549 1.19591 1.19598 1.22181 1.03160 0.90359 0.97649 1.21887 0.91798 0.99553 0.91859 1.18362 0.93517 0.88191 1.05801 1.23194 0.88405 0.92087 1.03218 1.76162 1.13728 1.06741 1.18599 1.78944 1.11432 0.99870 1.14603 1.47806 1.00054 1.13356 1.43315 0.64401 1.74896 1.18101 0.99163 1.21234 0.89225 0.90529 0.87014 0.74176 0.87950 0.87933 0.76587 0.91070 0.81144 0.79811 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.37 9.36 71.24 0.67 -1.70 16 2 C 0.16 3.81 6.81 42.98 0.29 4.10 16 3 N -0.48 -13.36 9.43 -172.33 -1.62 -14.98 16 4 C 0.09 2.40 6.75 41.89 0.28 2.68 16 5 C 0.57 18.74 7.81 86.84 0.68 19.41 16 6 O -0.56 -19.85 16.31 -3.80 -0.06 -19.92 16 7 N -0.69 -24.82 5.52 -469.52 -2.59 -27.41 16 8 C 0.12 4.41 6.15 85.63 0.53 4.93 16 9 C 0.43 20.44 7.85 87.66 0.69 21.13 16 10 O -0.62 -33.56 15.24 -3.07 -0.05 -33.61 16 11 N -0.56 -28.37 5.29 -306.99 -1.62 -30.00 16 12 C -0.34 -18.77 9.68 84.04 0.81 -17.95 16 13 H 0.09 5.02 7.16 -2.91 -0.02 5.00 16 14 C -0.01 -0.57 5.50 84.93 0.47 -0.10 16 15 N -0.92 -48.79 13.05 21.66 0.28 -48.50 16 16 Si 1.00 42.27 29.55 68.60 2.03 44.30 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 19 H -0.27 -11.01 7.11 99.48 0.71 -10.31 16 20 C -0.11 -2.28 9.62 22.57 0.22 -2.06 16 21 C -0.02 -0.37 9.82 22.65 0.22 -0.15 16 22 C -0.05 -1.00 5.90 -19.88 -0.12 -1.12 16 23 C 0.21 3.56 7.79 137.32 1.07 4.63 16 24 N -0.28 -4.99 9.10 -52.21 -0.48 -5.46 16 25 N -0.05 -0.73 13.47 37.02 0.50 -0.23 16 26 N -0.19 -1.42 7.90 37.02 0.29 -1.13 16 27 H 0.50 -1.39 8.96 -347.54 -3.12 -4.50 16 28 N -0.28 -3.41 12.15 -52.16 -0.63 -4.05 16 29 H 0.09 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.11 2.13 5.14 -2.39 -0.01 2.11 16 32 H 0.42 16.00 6.76 -92.70 -0.63 15.37 16 33 H 0.10 3.53 8.14 -2.38 -0.02 3.51 16 34 H 0.10 3.54 8.14 -2.39 -0.02 3.52 16 35 H 0.40 19.33 7.90 -92.71 -0.73 18.60 16 36 H 0.28 13.90 8.31 -92.70 -0.77 13.13 16 37 H 0.17 2.97 7.63 -2.91 -0.02 2.95 16 38 H 0.18 1.66 7.95 -2.91 -0.02 1.64 16 Total: -1.00 -72.60 343.74 -1.43 -74.03 By element: Atomic # 1 Polarization: 36.44 SS G_CDS: -3.28 Total: 33.16 kcal Atomic # 6 Polarization: 27.99 SS G_CDS: 5.81 Total: 33.80 kcal Atomic # 7 Polarization: -125.89 SS G_CDS: -5.87 Total: -131.76 kcal Atomic # 8 Polarization: -53.42 SS G_CDS: -0.11 Total: -53.53 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.30 kcal Total: -72.60 -1.43 -74.03 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001592348996.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 142.668 kcal (2) G-P(sol) polarization free energy of solvation -72.604 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.425 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.029 kcal (6) G-S(sol) free energy of system = (1) + (5) 68.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.16 seconds