Wall clock time and date at job start Tue Mar 31 2020 16:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 O 1.33908 * 125.60313 * 2 1 4 4 C 1.34943 * 109.37943 * 180.12751 * 3 2 1 5 5 C 1.46463 * 125.99869 * 179.88399 * 4 3 2 6 6 O 1.21625 * 119.99868 * 179.68896 * 5 4 3 7 7 O 1.34894 * 119.99912 * 359.69136 * 5 4 3 8 8 C 1.36648 * 108.00337 * 359.62368 * 4 3 2 9 9 C 1.35161 * 125.61212 * 179.70671 * 2 1 3 10 10 C 1.50707 * 126.43460 * 359.97438 * 9 2 1 11 11 N 1.46897 * 109.46763 * 80.00325 * 10 9 2 12 12 C 1.46907 * 110.99933 * 180.02562 * 11 10 9 13 13 C 1.50689 * 109.47295 * 180.02562 * 12 11 10 14 14 C 1.38330 * 119.96537 * 269.71922 * 13 12 11 15 15 C 1.38277 * 120.13797 * 179.76502 * 14 13 12 16 16 C 1.38118 * 120.07112 * 0.51144 * 15 14 13 17 17 C 1.38859 * 119.93211 * 359.74823 * 16 15 14 18 18 O 1.35743 * 120.07128 * 179.97438 * 17 16 15 19 19 C 1.34827 * 117.00306 * 354.48553 * 18 17 16 20 20 H 1.08000 * 119.99671 * 5.05412 * 19 18 17 21 21 C 1.38651 * 120.00621 * 185.06072 * 19 18 17 22 22 N 1.31557 * 119.99623 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 120.00520 * 179.97438 * 21 19 18 24 24 H 1.48503 * 109.47028 * 0.02562 * 23 21 19 25 25 H 1.48504 * 109.46939 * 119.99824 * 23 21 19 26 26 H 1.48500 * 109.47526 * 240.00106 * 23 21 19 27 27 C 1.38077 * 119.97201 * 89.99735 * 13 12 11 28 28 H 1.09008 * 109.47009 * 270.29291 * 1 2 3 29 29 H 1.08992 * 109.47242 * 30.29482 * 1 2 3 30 30 H 1.08998 * 109.46551 * 150.29839 * 1 2 3 31 31 H 0.96705 * 116.99918 * 179.97438 * 7 5 4 32 32 H 1.07998 * 126.64625 * 180.18995 * 8 4 3 33 33 H 1.09001 * 109.47074 * 199.99910 * 10 9 2 34 34 H 1.08999 * 109.47180 * 319.99857 * 10 9 2 35 35 H 1.00899 * 110.99869 * 303.94711 * 11 10 9 36 36 H 1.09002 * 109.46661 * 300.00257 * 12 11 10 37 37 H 1.08999 * 109.46837 * 59.99436 * 12 11 10 38 38 H 1.07999 * 119.92860 * 0.02562 * 14 13 12 39 39 H 1.08002 * 119.96291 * 180.26003 * 15 14 13 40 40 H 1.08001 * 120.03898 * 179.72261 * 16 15 14 41 41 H 0.97003 * 120.00086 * 180.02562 * 22 21 19 42 42 H 1.08007 * 120.02822 * 359.95919 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.2867 1.0888 0.0000 4 6 3.5823 0.7118 -0.0028 5 6 4.7400 1.6090 -0.0062 6 8 5.8659 1.1490 -0.0028 7 8 4.5574 2.9455 -0.0129 8 6 3.6248 -0.6540 0.0039 9 6 2.2941 -1.0988 0.0056 10 6 1.8296 -2.5325 0.0135 11 7 1.4495 -2.9314 -1.3482 12 6 0.9897 -4.3264 -1.3791 13 6 0.6100 -4.6990 -2.7889 14 6 -0.6881 -4.5099 -3.2278 15 6 -1.0393 -4.8461 -4.5223 16 6 -0.0969 -5.3819 -5.3781 17 6 1.2058 -5.5780 -4.9390 18 8 2.1341 -6.1049 -5.7775 19 6 1.7021 -6.5222 -6.9846 20 1 0.6762 -6.3555 -7.2782 21 6 2.5747 -7.1655 -7.8490 22 7 3.8244 -7.3683 -7.4915 23 14 1.9759 -7.7443 -9.5210 24 1 0.5407 -7.3975 -9.6801 25 1 2.7666 -7.0788 -10.5875 26 1 2.1445 -9.2160 -9.6250 27 6 1.5567 -5.2343 -3.6397 28 1 -0.3633 0.0053 1.0277 29 1 -0.3633 0.8873 -0.5184 30 1 -0.3632 -0.8927 -0.5092 31 1 5.3517 3.4971 -0.0145 32 1 4.5109 -1.2714 0.0066 33 1 2.6364 -3.1739 0.3681 34 1 0.9690 -2.6319 0.6749 35 1 0.7477 -2.3114 -1.7240 36 1 1.7904 -4.9805 -1.0338 37 1 0.1231 -4.4378 -0.7274 38 1 -1.4279 -4.0948 -2.5592 39 1 -2.0527 -4.6933 -4.8632 40 1 -0.3729 -5.6484 -6.3876 41 1 4.4350 -7.8180 -8.0963 42 1 2.5692 -5.3853 -3.2953 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600831071.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:45 Heat of formation + Delta-G solvation = -76.435407 kcal Electronic energy + Delta-G solvation = -26420.294853 eV Core-core repulsion = 22332.856837 eV Total energy + Delta-G solvation = -4087.438016 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.43 seconds Orbital eigenvalues (eV) -43.10972 -40.22393 -39.09292 -37.26377 -36.52785 -35.97601 -33.54342 -32.46115 -32.25931 -30.61719 -29.09094 -28.25727 -26.38355 -25.28842 -23.86644 -23.39664 -21.68843 -21.55338 -20.64417 -20.26134 -18.41690 -17.87858 -17.56887 -16.99015 -16.91472 -15.95652 -15.62754 -15.60390 -15.01326 -14.72077 -14.67706 -14.37886 -14.21071 -13.75862 -13.52875 -13.39277 -13.38395 -13.31438 -13.24526 -12.71857 -12.49666 -12.17641 -11.99843 -11.91567 -11.75428 -11.53493 -11.30269 -11.26979 -10.84634 -10.74703 -10.58541 -10.41894 -10.16305 -9.32247 -8.89727 -8.83158 -8.42887 -8.07456 -7.23153 -6.43107 -4.02206 0.51921 1.80457 2.07006 2.14349 2.36861 2.58685 2.87106 3.13214 3.14511 3.20152 3.97633 4.22543 4.28456 4.44865 4.63124 4.71235 4.80704 5.01058 5.05374 5.05788 5.14144 5.21242 5.30209 5.35353 5.41041 5.57089 5.61170 5.66749 5.68269 5.84789 5.91125 5.98497 6.03880 6.18044 6.36949 6.55516 6.65403 6.92170 6.94799 7.08186 7.25054 7.34339 7.39953 7.45760 7.45936 7.82371 8.01807 9.02522 9.73294 10.75025 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.013687 B = 0.002236 C = 0.002031 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2045.250267 B =12520.437252 C =13785.211614 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.043 3.957 3 O -0.150 6.150 4 C -0.082 4.082 5 C 0.574 3.426 6 O -0.494 6.494 7 O -0.507 6.507 8 C -0.072 4.072 9 C -0.184 4.184 10 C 0.128 3.872 11 N -0.678 5.678 12 C 0.106 3.894 13 C -0.049 4.049 14 C -0.208 4.208 15 C -0.076 4.076 16 C -0.232 4.232 17 C 0.152 3.848 18 O -0.178 6.178 19 C -0.391 4.391 20 H 0.092 0.908 21 C 0.039 3.961 22 N -0.862 5.862 23 Si 0.941 3.059 24 H -0.267 1.267 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.165 4.165 28 H 0.089 0.911 29 H 0.085 0.915 30 H 0.092 0.908 31 H 0.418 0.582 32 H 0.167 0.833 33 H 0.087 0.913 34 H 0.041 0.959 35 H 0.341 0.659 36 H 0.079 0.921 37 H 0.035 0.965 38 H 0.101 0.899 39 H 0.106 0.894 40 H 0.126 0.874 41 H 0.269 0.731 42 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.495 15.391 17.130 23.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.011 4.011 3 O -0.045 6.045 4 C -0.131 4.131 5 C 0.418 3.582 6 O -0.384 6.384 7 O -0.319 6.319 8 C -0.092 4.092 9 C -0.186 4.186 10 C -0.001 4.001 11 N -0.309 5.309 12 C -0.021 4.021 13 C -0.050 4.050 14 C -0.228 4.228 15 C -0.094 4.094 16 C -0.252 4.252 17 C 0.098 3.902 18 O -0.081 6.081 19 C -0.467 4.467 20 H 0.109 0.891 21 C -0.166 4.166 22 N -0.497 5.497 23 Si 0.765 3.235 24 H -0.191 1.191 25 H -0.202 1.202 26 H -0.202 1.202 27 C -0.185 4.185 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.111 0.889 31 H 0.278 0.722 32 H 0.184 0.816 33 H 0.105 0.895 34 H 0.059 0.941 35 H 0.160 0.840 36 H 0.098 0.902 37 H 0.053 0.947 38 H 0.119 0.881 39 H 0.124 0.876 40 H 0.143 0.857 41 H 0.079 0.921 42 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -5.516 15.020 16.875 23.255 hybrid contribution -0.548 0.094 -0.606 0.823 sum -6.064 15.115 16.269 23.020 Atomic orbital electron populations 1.20495 0.84247 1.04921 1.04166 1.22775 0.94288 0.83665 1.00337 1.84076 1.15481 1.34277 1.70694 1.20419 0.81325 0.92478 1.18884 1.18818 0.86151 0.80630 0.72592 1.91027 1.23178 1.77332 1.46851 1.84662 1.43415 1.18109 1.85680 1.21892 0.98717 0.91948 0.96663 1.20105 0.92297 0.96203 1.09971 1.20265 0.99880 0.89655 0.90304 1.60511 1.47091 1.03441 1.19896 1.20818 0.98521 0.89132 0.93675 1.19114 0.93173 0.98570 0.94146 1.20401 0.95647 1.10026 0.96689 1.20682 0.97928 0.97330 0.93490 1.21186 0.93893 1.08753 1.01332 1.19365 0.88638 0.91953 0.90228 1.83982 1.32069 1.67301 1.24787 1.21361 0.97788 1.37728 0.89869 0.89073 1.25286 0.95111 0.96457 0.99709 1.70052 1.03798 1.39308 1.36551 0.85653 0.78846 0.78601 0.80350 1.19140 1.20156 1.20155 1.20035 0.99649 1.07067 0.91739 0.89206 0.89578 0.88892 0.72246 0.81587 0.89498 0.94072 0.83999 0.90223 0.94653 0.88095 0.87595 0.85670 0.92085 0.86474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.48 10.20 36.01 0.37 -0.11 16 2 C 0.04 0.41 7.31 -35.40 -0.26 0.15 16 3 O -0.15 -1.68 10.67 4.73 0.05 -1.63 16 4 C -0.08 -0.96 7.18 -36.85 -0.26 -1.22 16 5 C 0.57 6.40 8.30 34.04 0.28 6.68 16 6 O -0.49 -6.61 17.65 -19.36 -0.34 -6.95 16 7 O -0.51 -4.15 13.44 -42.47 -0.57 -4.72 16 8 C -0.07 -0.82 10.57 -39.38 -0.42 -1.24 16 9 C -0.18 -1.91 5.65 -104.94 -0.59 -2.51 16 10 C 0.13 1.24 5.68 -4.97 -0.03 1.21 16 11 N -0.68 -8.26 6.48 -116.34 -0.75 -9.02 16 12 C 0.11 1.39 5.81 -4.98 -0.03 1.36 16 13 C -0.05 -0.84 5.39 -104.65 -0.56 -1.41 16 14 C -0.21 -3.41 9.70 -39.53 -0.38 -3.79 16 15 C -0.08 -1.37 10.04 -39.61 -0.40 -1.76 16 16 C -0.23 -5.03 9.17 -39.40 -0.36 -5.39 16 17 C 0.15 3.68 6.65 -39.11 -0.26 3.42 16 18 O -0.18 -5.12 9.76 0.08 0.00 -5.12 16 19 C -0.39 -11.00 9.49 30.89 0.29 -10.70 16 20 H 0.09 2.37 5.20 -52.49 -0.27 2.10 16 21 C 0.04 1.07 5.49 -17.52 -0.10 0.97 16 22 N -0.86 -25.50 13.67 55.48 0.76 -24.74 16 23 Si 0.94 20.64 29.55 -169.99 -5.02 15.61 16 24 H -0.27 -5.60 7.11 56.52 0.40 -5.20 16 25 H -0.28 -5.94 7.11 56.52 0.40 -5.54 16 26 H -0.28 -5.92 7.11 56.52 0.40 -5.52 16 27 C -0.17 -3.48 9.64 -39.40 -0.38 -3.86 16 28 H 0.09 0.37 8.14 -51.92 -0.42 -0.05 16 29 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 30 H 0.09 0.50 7.01 -51.93 -0.36 0.13 16 31 H 0.42 1.25 9.11 45.56 0.42 1.67 16 32 H 0.17 1.77 8.06 -52.49 -0.42 1.35 16 33 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.04 0.32 8.13 -51.93 -0.42 -0.10 16 35 H 0.34 3.95 7.86 -39.29 -0.31 3.64 16 36 H 0.08 1.04 8.08 -51.93 -0.42 0.62 16 37 H 0.04 0.39 8.08 -51.93 -0.42 -0.03 16 38 H 0.10 1.34 8.06 -52.49 -0.42 0.92 16 39 H 0.11 1.59 8.06 -52.49 -0.42 1.17 16 40 H 0.13 2.73 5.64 -52.49 -0.30 2.43 16 41 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 42 H 0.12 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 372.91 15.07 5.62 5.62 Total: -1.00 -34.63 372.91 -7.53 -42.16 By element: Atomic # 1 Polarization: 11.19 SS G_CDS: -4.18 Total: 7.01 kcal Atomic # 6 Polarization: -15.13 SS G_CDS: -3.09 Total: -18.22 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.00 Total: -33.76 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.86 Total: -18.42 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.61 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.63 -7.53 -42.16 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600831071.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.278 kcal (2) G-P(sol) polarization free energy of solvation -34.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.158 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds