Wall clock time and date at job start Tue Mar 31 2020 15:53:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34444 * 124.92381 * 2 1 4 4 C 1.34805 * 110.89168 * 180.02562 * 3 2 1 5 5 C 1.38945 * 133.49389 * 180.02562 * 4 3 2 6 6 C 1.37851 * 119.81832 * 179.97438 * 5 4 3 7 7 C 1.38748 * 120.68129 * 359.97438 * 6 5 4 8 8 C 1.36735 * 120.42230 * 0.02682 * 7 6 5 9 9 C 1.39413 * 119.71265 * 359.67521 * 8 7 6 10 10 C 1.33998 * 124.92188 * 180.02562 * 2 1 3 11 11 C 1.50699 * 126.91044 * 359.96121 * 10 2 1 12 12 C 1.50701 * 109.47278 * 90.01982 * 11 10 2 13 13 O 1.21286 * 120.00148 * 355.03032 * 12 11 10 14 14 N 1.34776 * 119.99732 * 175.02515 * 12 11 10 15 15 C 1.37097 * 119.99971 * 5.47389 * 14 12 11 16 16 H 1.08001 * 120.00476 * 320.03281 * 15 14 12 17 17 C 1.38958 * 119.99940 * 140.03641 * 15 14 12 18 18 N 1.31410 * 120.00052 * 163.78049 * 17 15 14 19 19 Si 1.86801 * 119.99843 * 343.77742 * 17 15 14 20 20 H 1.48502 * 109.47010 * 95.35921 * 19 17 15 21 21 H 1.48500 * 109.47120 * 215.36129 * 19 17 15 22 22 H 1.48499 * 109.47224 * 335.36270 * 19 17 15 23 23 C 1.46500 * 120.00091 * 185.47389 * 14 12 11 24 24 C 1.52998 * 109.46939 * 89.99823 * 23 14 12 25 25 C 1.50703 * 109.46902 * 180.02562 * 24 23 14 26 26 O 1.20826 * 119.99786 * 359.97438 * 25 24 23 27 27 O 1.34228 * 119.99957 * 180.02562 * 25 24 23 28 28 H 1.08995 * 109.46993 * 269.97631 * 1 2 3 29 29 H 1.08993 * 109.47258 * 29.97709 * 1 2 3 30 30 H 1.09002 * 109.47112 * 149.97846 * 1 2 3 31 31 H 1.07997 * 120.09135 * 359.96902 * 5 4 3 32 32 H 1.07995 * 119.65751 * 179.97438 * 6 5 4 33 33 H 1.07994 * 119.78487 * 179.97438 * 7 6 5 34 34 H 1.07995 * 120.14374 * 179.97438 * 8 7 6 35 35 H 1.09001 * 109.46573 * 330.01857 * 11 10 2 36 36 H 1.08994 * 109.47115 * 210.02720 * 11 10 2 37 37 H 0.96999 * 119.99832 * 179.97438 * 18 17 15 38 38 H 1.08994 * 109.47292 * 210.00421 * 23 14 12 39 39 H 1.08999 * 109.46545 * 330.00121 * 23 14 12 40 40 H 1.08994 * 109.47338 * 299.99929 * 24 23 14 41 41 H 1.08999 * 109.47259 * 60.00735 * 24 23 14 42 42 H 0.96701 * 116.99661 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2767 1.1023 0.0000 4 6 3.5845 0.7755 -0.0006 5 6 4.7567 1.5215 -0.0004 6 6 5.9771 0.8805 -0.0006 7 6 6.0491 -0.5051 -0.0005 8 6 4.9075 -1.2577 -0.0007 9 6 3.6641 -0.6271 0.0058 10 6 2.2741 -1.0987 -0.0005 11 6 1.8042 -2.5306 -0.0003 12 6 1.6472 -3.0080 -1.4211 13 8 1.8051 -2.2343 -2.3417 14 7 1.3315 -4.2946 -1.6686 15 6 1.0431 -5.1417 -0.6299 16 1 1.6168 -5.0908 0.2837 17 6 0.0126 -6.0658 -0.7526 18 7 -0.0673 -7.0758 0.0842 19 14 -1.2591 -5.8722 -2.1071 20 1 -0.8658 -6.6979 -3.2770 21 1 -2.5848 -6.3192 -1.6089 22 1 -1.3378 -4.4457 -2.5120 23 6 1.2964 -4.7881 -3.0475 24 6 2.6780 -5.3198 -3.4341 25 6 2.6421 -5.8268 -4.8529 26 8 1.6166 -5.7692 -5.4892 27 8 3.7491 -6.3433 -5.4092 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.7118 2.6005 -0.0001 32 1 6.8866 1.4629 -0.0008 33 1 7.0129 -0.9922 -0.0011 34 1 4.9688 -2.3359 -0.0010 35 1 0.8454 -2.5982 0.5138 36 1 2.5365 -3.1532 0.5135 37 1 -0.7868 -7.7207 -0.0012 38 1 0.5628 -5.5901 -3.1279 39 1 1.0198 -3.9741 -3.7176 40 1 3.4116 -4.5176 -3.3539 41 1 2.9546 -6.1337 -2.7640 42 1 3.6772 -6.6552 -6.3217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001600858138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:50 Heat of formation + Delta-G solvation = -92.899552 kcal Electronic energy + Delta-G solvation = -28428.674978 eV Core-core repulsion = 24340.523023 eV Total energy + Delta-G solvation = -4088.151955 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -42.22919 -40.04980 -38.88385 -37.71329 -36.02264 -35.27298 -33.83803 -32.33161 -31.09615 -30.97728 -30.34570 -28.59200 -26.26913 -25.10767 -24.21182 -22.75268 -21.50043 -20.97692 -20.01706 -18.97773 -17.96353 -17.15697 -16.78402 -16.57164 -16.41530 -16.25297 -15.89500 -15.54394 -15.23693 -14.89889 -14.45152 -13.98107 -13.71732 -13.52723 -13.25216 -13.19268 -12.94814 -12.77118 -12.60522 -12.54712 -12.23285 -12.00654 -11.88028 -11.77354 -11.69390 -11.33465 -11.25492 -11.04545 -10.88436 -10.57986 -10.34833 -10.23100 -9.90960 -9.68031 -9.30870 -8.72938 -8.42096 -7.96200 -7.72344 -6.56437 -4.24965 1.11343 1.53929 2.47216 2.58084 2.94072 3.05764 3.18411 3.21992 3.27549 3.64201 3.88693 4.05701 4.40152 4.64145 4.83481 4.86218 5.04243 5.20151 5.29983 5.35457 5.38393 5.45475 5.46081 5.61385 5.63672 5.73146 5.83295 5.89156 5.98375 6.01811 6.04471 6.22720 6.24543 6.26962 6.45003 6.47511 6.49134 6.61927 6.69466 6.74827 6.88388 7.23733 7.44332 7.95585 8.09390 8.13220 8.83507 9.21002 9.53930 10.53159 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011534 B = 0.004198 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.986893 B = 6668.568360 C = 7935.519641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.035 3.965 3 O -0.196 6.196 4 C 0.049 3.951 5 C -0.110 4.110 6 C -0.103 4.103 7 C -0.141 4.141 8 C -0.066 4.066 9 C -0.108 4.108 10 C -0.142 4.142 11 C -0.051 4.051 12 C 0.489 3.511 13 O -0.584 6.584 14 N -0.468 5.468 15 C -0.352 4.352 16 H 0.108 0.892 17 C 0.071 3.929 18 N -0.860 5.860 19 Si 0.873 3.127 20 H -0.270 1.270 21 H -0.287 1.287 22 H -0.260 1.260 23 C 0.115 3.885 24 C -0.123 4.123 25 C 0.484 3.516 26 O -0.520 6.520 27 O -0.520 6.520 28 H 0.083 0.917 29 H 0.076 0.924 30 H 0.094 0.906 31 H 0.127 0.873 32 H 0.130 0.870 33 H 0.125 0.875 34 H 0.126 0.874 35 H 0.103 0.897 36 H 0.096 0.904 37 H 0.276 0.724 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.105 0.895 41 H 0.116 0.884 42 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.690 8.844 0.022 11.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.011 4.011 3 O -0.098 6.098 4 C 0.001 3.999 5 C -0.129 4.129 6 C -0.121 4.121 7 C -0.159 4.159 8 C -0.084 4.084 9 C -0.109 4.109 10 C -0.143 4.143 11 C -0.090 4.090 12 C 0.279 3.721 13 O -0.467 6.467 14 N -0.190 5.190 15 C -0.478 4.478 16 H 0.126 0.874 17 C -0.137 4.137 18 N -0.495 5.495 19 Si 0.701 3.299 20 H -0.197 1.197 21 H -0.214 1.214 22 H -0.184 1.184 23 C -0.009 4.009 24 C -0.162 4.162 25 C 0.326 3.674 26 O -0.408 6.408 27 O -0.331 6.331 28 H 0.102 0.898 29 H 0.095 0.905 30 H 0.113 0.887 31 H 0.145 0.855 32 H 0.147 0.853 33 H 0.143 0.857 34 H 0.144 0.856 35 H 0.121 0.879 36 H 0.115 0.885 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.099 0.901 40 H 0.123 0.877 41 H 0.134 0.866 42 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges 7.297 9.461 -0.119 11.949 hybrid contribution -0.669 -0.644 -1.291 1.591 sum 6.628 8.817 -1.410 11.120 Atomic orbital electron populations 1.20411 0.84897 1.04584 1.03426 1.22000 0.93685 0.83095 1.02367 1.83892 1.14873 1.34125 1.76934 1.19547 0.83364 0.93545 1.03397 1.19842 0.88213 0.99331 1.05505 1.20818 0.96228 0.94632 1.00437 1.20705 0.98179 0.93816 1.03218 1.20327 0.90245 1.00186 0.97660 1.19808 0.93896 0.92878 1.04315 1.20472 0.90390 0.95442 1.08028 1.19782 1.03420 0.89679 0.96156 1.20376 0.79805 0.81466 0.90479 1.90586 1.55199 1.54490 1.46446 1.43689 1.62507 1.07927 1.04887 1.19101 1.16972 1.15571 0.96200 0.87423 1.25336 0.96739 0.94778 0.96856 1.69694 1.31864 1.10745 1.37188 0.86976 0.81144 0.80203 0.81570 1.19697 1.21447 1.18439 1.21374 0.93970 0.99511 0.86008 1.21772 1.02309 1.03488 0.88633 1.23720 0.80215 0.73332 0.90091 1.90700 1.32736 1.53202 1.64140 1.84580 1.40323 1.73807 1.34415 0.89849 0.90541 0.88731 0.85542 0.85251 0.85677 0.85617 0.87879 0.88532 0.91317 0.90934 0.90116 0.87656 0.86632 0.73850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.03 10.00 36.01 0.36 -0.67 16 2 C 0.04 0.60 7.23 -35.80 -0.26 0.34 16 3 O -0.20 -3.35 10.58 3.93 0.04 -3.31 16 4 C 0.05 0.81 7.42 -38.47 -0.29 0.52 16 5 C -0.11 -1.47 10.07 -39.46 -0.40 -1.87 16 6 C -0.10 -1.20 10.01 -39.53 -0.40 -1.60 16 7 C -0.14 -1.77 9.98 -39.94 -0.40 -2.16 16 8 C -0.07 -1.00 10.05 -39.69 -0.40 -1.40 16 9 C -0.11 -1.88 6.38 -105.16 -0.67 -2.55 16 10 C -0.14 -2.56 4.85 -102.66 -0.50 -3.06 16 11 C -0.05 -0.94 4.51 -29.04 -0.13 -1.07 16 12 C 0.49 10.65 7.61 -10.99 -0.08 10.57 16 13 O -0.58 -14.06 15.60 5.55 0.09 -13.97 16 14 N -0.47 -10.52 2.16 -114.81 -0.25 -10.77 16 15 C -0.35 -8.40 9.13 -14.93 -0.14 -8.53 16 16 H 0.11 2.63 7.18 -52.49 -0.38 2.26 16 17 C 0.07 1.77 5.39 -17.47 -0.09 1.68 16 18 N -0.86 -22.54 13.96 55.50 0.77 -21.76 16 19 Si 0.87 20.29 24.75 -169.99 -4.21 16.09 16 20 H -0.27 -6.34 6.77 56.52 0.38 -5.96 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 22 H -0.26 -6.15 7.05 56.52 0.40 -5.76 16 23 C 0.11 2.50 3.45 -4.04 -0.01 2.49 16 24 C -0.12 -2.25 6.14 -27.88 -0.17 -2.42 16 25 C 0.48 8.39 8.33 36.01 0.30 8.69 16 26 O -0.52 -10.52 16.74 -18.75 -0.31 -10.83 16 27 O -0.52 -6.97 13.42 -39.25 -0.53 -7.50 16 28 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 30 H 0.09 1.38 7.68 -51.93 -0.40 0.98 16 31 H 0.13 1.36 8.06 -52.49 -0.42 0.93 16 32 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 33 H 0.13 1.22 8.06 -52.49 -0.42 0.79 16 34 H 0.13 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.10 1.80 7.72 -51.93 -0.40 1.40 16 36 H 0.10 1.70 7.59 -51.93 -0.39 1.31 16 37 H 0.28 6.85 8.31 -40.82 -0.34 6.51 16 38 H 0.07 1.68 3.08 -51.93 -0.16 1.52 16 39 H 0.08 1.84 7.31 -51.93 -0.38 1.46 16 40 H 0.11 1.84 8.14 -51.93 -0.42 1.42 16 41 H 0.12 2.05 8.14 -51.93 -0.42 1.63 16 42 H 0.40 3.47 9.10 45.56 0.41 3.89 16 LS Contribution 361.45 15.07 5.45 5.45 Total: -1.00 -32.06 361.45 -6.46 -38.51 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -4.23 Total: 9.17 kcal Atomic # 6 Polarization: 2.20 SS G_CDS: -3.27 Total: -1.07 kcal Atomic # 7 Polarization: -33.06 SS G_CDS: 0.53 Total: -32.53 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -0.71 Total: -35.61 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -4.21 Total: 16.09 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.06 -6.46 -38.51 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600858138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.385 kcal (2) G-P(sol) polarization free energy of solvation -32.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.444 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.456 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds