Wall clock time and date at job start Tue Mar 31 2020 15:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34444 * 124.92381 * 2 1 4 4 C 1.34805 * 110.89168 * 180.02562 * 3 2 1 5 5 C 1.38945 * 133.49389 * 180.02562 * 4 3 2 6 6 C 1.37851 * 119.81832 * 179.97438 * 5 4 3 7 7 C 1.38748 * 120.68129 * 359.97438 * 6 5 4 8 8 C 1.36735 * 120.42230 * 0.02682 * 7 6 5 9 9 C 1.39413 * 119.71265 * 359.67521 * 8 7 6 10 10 C 1.33998 * 124.92188 * 180.02562 * 2 1 3 11 11 C 1.50699 * 126.91044 * 359.96121 * 10 2 1 12 12 C 1.50701 * 109.47278 * 90.01982 * 11 10 2 13 13 O 1.21286 * 120.00148 * 355.03032 * 12 11 10 14 14 N 1.34776 * 119.99732 * 175.02515 * 12 11 10 15 15 C 1.37097 * 119.99971 * 5.47389 * 14 12 11 16 16 H 1.08001 * 120.00476 * 320.03281 * 15 14 12 17 17 C 1.38958 * 119.99940 * 140.03641 * 15 14 12 18 18 N 1.31410 * 120.00052 * 163.78049 * 17 15 14 19 19 Si 1.86801 * 119.99843 * 343.77742 * 17 15 14 20 20 H 1.48502 * 109.47010 * 95.35921 * 19 17 15 21 21 H 1.48500 * 109.47120 * 215.36129 * 19 17 15 22 22 H 1.48499 * 109.47224 * 335.36270 * 19 17 15 23 23 C 1.46500 * 120.00091 * 185.47389 * 14 12 11 24 24 C 1.52998 * 109.46939 * 89.99823 * 23 14 12 25 25 C 1.50703 * 109.46902 * 180.02562 * 24 23 14 26 26 O 1.20826 * 119.99786 * 359.97438 * 25 24 23 27 27 O 1.34228 * 119.99957 * 180.02562 * 25 24 23 28 28 H 1.08995 * 109.46993 * 269.97631 * 1 2 3 29 29 H 1.08993 * 109.47258 * 29.97709 * 1 2 3 30 30 H 1.09002 * 109.47112 * 149.97846 * 1 2 3 31 31 H 1.07997 * 120.09135 * 359.96902 * 5 4 3 32 32 H 1.07995 * 119.65751 * 179.97438 * 6 5 4 33 33 H 1.07994 * 119.78487 * 179.97438 * 7 6 5 34 34 H 1.07995 * 120.14374 * 179.97438 * 8 7 6 35 35 H 1.09001 * 109.46573 * 330.01857 * 11 10 2 36 36 H 1.08994 * 109.47115 * 210.02720 * 11 10 2 37 37 H 0.96999 * 119.99832 * 179.97438 * 18 17 15 38 38 H 1.08994 * 109.47292 * 210.00421 * 23 14 12 39 39 H 1.08999 * 109.46545 * 330.00121 * 23 14 12 40 40 H 1.08994 * 109.47338 * 299.99929 * 24 23 14 41 41 H 1.08999 * 109.47259 * 60.00735 * 24 23 14 42 42 H 0.96701 * 116.99661 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2767 1.1023 0.0000 4 6 3.5845 0.7755 -0.0006 5 6 4.7567 1.5215 -0.0004 6 6 5.9771 0.8805 -0.0006 7 6 6.0491 -0.5051 -0.0005 8 6 4.9075 -1.2577 -0.0007 9 6 3.6641 -0.6271 0.0058 10 6 2.2741 -1.0987 -0.0005 11 6 1.8042 -2.5306 -0.0003 12 6 1.6472 -3.0080 -1.4211 13 8 1.8051 -2.2343 -2.3417 14 7 1.3315 -4.2946 -1.6686 15 6 1.0431 -5.1417 -0.6299 16 1 1.6168 -5.0908 0.2837 17 6 0.0126 -6.0658 -0.7526 18 7 -0.0673 -7.0758 0.0842 19 14 -1.2591 -5.8722 -2.1071 20 1 -0.8658 -6.6979 -3.2770 21 1 -2.5848 -6.3192 -1.6089 22 1 -1.3378 -4.4457 -2.5120 23 6 1.2964 -4.7881 -3.0475 24 6 2.6780 -5.3198 -3.4341 25 6 2.6421 -5.8268 -4.8529 26 8 1.6166 -5.7692 -5.4892 27 8 3.7491 -6.3433 -5.4092 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8901 -0.5134 30 1 -0.3633 -0.8898 -0.5142 31 1 4.7118 2.6005 -0.0001 32 1 6.8866 1.4629 -0.0008 33 1 7.0129 -0.9922 -0.0011 34 1 4.9688 -2.3359 -0.0010 35 1 0.8454 -2.5982 0.5138 36 1 2.5365 -3.1532 0.5135 37 1 -0.7868 -7.7207 -0.0012 38 1 0.5628 -5.5901 -3.1279 39 1 1.0198 -3.9741 -3.7176 40 1 3.4116 -4.5176 -3.3539 41 1 2.9546 -6.1337 -2.7640 42 1 3.6772 -6.6552 -6.3217 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001600858138.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 15:53:49 Heat of formation + Delta-G solvation = -112.382867 kcal Electronic energy + Delta-G solvation = -28429.519838 eV Core-core repulsion = 24340.523023 eV Total energy + Delta-G solvation = -4088.996815 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -43.42651 -41.47842 -40.58909 -38.77152 -37.39995 -36.95754 -35.20752 -34.19066 -32.71228 -32.08051 -31.44968 -29.94890 -27.48824 -26.96162 -25.79499 -23.86169 -22.61310 -22.34253 -21.48203 -20.62127 -19.36599 -18.68009 -18.19500 -18.03011 -17.83478 -17.67623 -17.20495 -16.99516 -16.57439 -16.24783 -16.05512 -15.62648 -14.98931 -14.88230 -14.64698 -14.57477 -14.43471 -14.08369 -13.96416 -13.91897 -13.63320 -13.53955 -13.10659 -13.06650 -12.98003 -12.84933 -12.72165 -12.63519 -12.35595 -12.10019 -11.82576 -11.74079 -11.70338 -11.20047 -10.91232 -10.47374 -9.81673 -9.52680 -8.92725 -8.52227 -6.19633 0.01382 0.44697 1.08784 1.18100 1.30354 1.32512 1.38633 1.75794 1.78744 1.99223 2.14521 2.71020 2.84997 2.95464 3.50521 3.69807 3.76360 3.81053 3.97385 4.14113 4.16489 4.28472 4.31408 4.33127 4.46702 4.51666 4.53475 4.62177 4.64395 4.68519 4.77623 4.79590 4.85377 4.92881 5.09199 5.35192 5.38717 5.41043 5.50015 5.53951 5.57174 5.81757 6.07186 6.20566 6.25713 6.91151 6.93036 7.36020 7.72086 8.60674 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.011534 B = 0.004198 C = 0.003528 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2426.986893 B = 6668.568360 C = 7935.519641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.030 3.970 3 O -0.204 6.204 4 C 0.020 3.980 5 C -0.114 4.114 6 C -0.092 4.092 7 C -0.132 4.132 8 C -0.092 4.092 9 C -0.138 4.138 10 C -0.173 4.173 11 C -0.040 4.040 12 C 0.490 3.510 13 O -0.607 6.607 14 N -0.476 5.476 15 C -0.336 4.336 16 H 0.101 0.899 17 C 0.044 3.956 18 N -0.890 5.890 19 Si 0.911 3.089 20 H -0.275 1.275 21 H -0.282 1.282 22 H -0.271 1.271 23 C 0.112 3.888 24 C -0.118 4.118 25 C 0.495 3.505 26 O -0.553 6.553 27 O -0.504 6.504 28 H 0.110 0.890 29 H 0.091 0.909 30 H 0.079 0.921 31 H 0.153 0.847 32 H 0.173 0.827 33 H 0.158 0.842 34 H 0.124 0.876 35 H 0.109 0.891 36 H 0.101 0.899 37 H 0.280 0.720 38 H 0.059 0.941 39 H 0.065 0.935 40 H 0.114 0.886 41 H 0.123 0.877 42 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.665 9.935 -0.085 13.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.017 4.017 3 O -0.107 6.107 4 C -0.027 4.027 5 C -0.132 4.132 6 C -0.110 4.110 7 C -0.150 4.150 8 C -0.110 4.110 9 C -0.139 4.139 10 C -0.174 4.174 11 C -0.079 4.079 12 C 0.281 3.719 13 O -0.491 6.491 14 N -0.197 5.197 15 C -0.463 4.463 16 H 0.119 0.881 17 C -0.161 4.161 18 N -0.527 5.527 19 Si 0.740 3.260 20 H -0.202 1.202 21 H -0.209 1.209 22 H -0.196 1.196 23 C -0.011 4.011 24 C -0.156 4.156 25 C 0.339 3.661 26 O -0.444 6.444 27 O -0.317 6.317 28 H 0.128 0.872 29 H 0.110 0.890 30 H 0.098 0.902 31 H 0.170 0.830 32 H 0.191 0.809 33 H 0.175 0.825 34 H 0.142 0.858 35 H 0.127 0.873 36 H 0.119 0.881 37 H 0.090 0.910 38 H 0.077 0.923 39 H 0.084 0.916 40 H 0.132 0.868 41 H 0.141 0.859 42 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 9.298 10.537 -0.242 14.055 hybrid contribution -1.108 -0.910 -1.303 1.937 sum 8.190 9.627 -1.544 12.734 Atomic orbital electron populations 1.20518 0.83006 1.04555 1.05145 1.22520 0.94936 0.82963 1.01291 1.83868 1.15447 1.34155 1.77205 1.20096 0.83833 0.93874 1.04869 1.20344 0.87603 1.00738 1.04546 1.21368 0.97148 0.94590 0.97878 1.21154 0.98543 0.94421 1.00867 1.20547 0.90616 1.00599 0.99262 1.20085 0.94278 0.93746 1.05765 1.20549 0.91563 0.95196 1.10139 1.19668 1.03880 0.90490 0.93883 1.20899 0.78533 0.80867 0.91591 1.90562 1.56006 1.54976 1.47606 1.43769 1.62906 1.08175 1.04886 1.19035 1.16207 1.14882 0.96213 0.88118 1.25644 0.97706 0.94910 0.97848 1.69726 1.32798 1.11644 1.38545 0.86381 0.80307 0.79211 0.80131 1.20168 1.20905 1.19626 1.21303 0.95842 0.98555 0.85428 1.21587 1.00190 1.03973 0.89896 1.23332 0.80402 0.72881 0.89519 1.90700 1.34137 1.54753 1.64818 1.84500 1.38037 1.72860 1.36319 0.87200 0.88982 0.90209 0.82965 0.80946 0.82469 0.85776 0.87250 0.88096 0.91006 0.92267 0.91612 0.86798 0.85927 0.70941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.03 10.00 71.24 0.71 -1.32 16 2 C 0.03 1.03 7.23 24.72 0.18 1.21 16 3 O -0.20 -6.99 10.58 -8.84 -0.09 -7.09 16 4 C 0.02 0.65 7.42 22.99 0.17 0.82 16 5 C -0.11 -2.77 10.07 22.35 0.23 -2.55 16 6 C -0.09 -1.82 10.01 22.30 0.22 -1.59 16 7 C -0.13 -2.94 9.98 22.04 0.22 -2.72 16 8 C -0.09 -2.74 10.05 22.20 0.22 -2.52 16 9 C -0.14 -4.83 6.38 -20.21 -0.13 -4.96 16 10 C -0.17 -6.37 4.85 -18.59 -0.09 -6.46 16 11 C -0.04 -1.51 4.51 29.10 0.13 -1.37 16 12 C 0.49 21.71 7.61 87.66 0.67 22.38 16 13 O -0.61 -29.79 15.60 -3.05 -0.05 -29.84 16 14 N -0.48 -21.59 2.16 -635.55 -1.37 -22.96 16 15 C -0.34 -16.17 9.13 84.04 0.77 -15.40 16 16 H 0.10 4.97 7.18 -2.91 -0.02 4.95 16 17 C 0.04 2.22 5.39 84.93 0.46 2.67 16 18 N -0.89 -46.82 13.96 21.67 0.30 -46.52 16 19 Si 0.91 42.25 24.75 68.60 1.70 43.94 16 20 H -0.27 -12.84 6.77 99.48 0.67 -12.17 16 21 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 22 H -0.27 -12.94 7.05 99.48 0.70 -12.24 16 23 C 0.11 4.94 3.45 86.38 0.30 5.24 16 24 C -0.12 -4.25 6.14 29.85 0.18 -4.07 16 25 C 0.49 16.59 8.33 71.24 0.59 17.18 16 26 O -0.55 -22.12 16.74 21.96 0.37 -21.75 16 27 O -0.50 -12.28 13.42 -51.40 -0.69 -12.97 16 28 H 0.11 2.30 8.14 -2.39 -0.02 2.28 16 29 H 0.09 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.08 2.36 7.68 -2.39 -0.02 2.34 16 31 H 0.15 2.80 8.06 -2.91 -0.02 2.78 16 32 H 0.17 1.90 8.06 -2.91 -0.02 1.88 16 33 H 0.16 2.42 8.06 -2.91 -0.02 2.40 16 34 H 0.12 3.56 8.06 -2.91 -0.02 3.54 16 35 H 0.11 3.91 7.72 -2.39 -0.02 3.89 16 36 H 0.10 3.65 7.59 -2.39 -0.02 3.64 16 37 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 38 H 0.06 2.77 3.08 -2.39 -0.01 2.76 16 39 H 0.07 3.06 7.31 -2.39 -0.02 3.05 16 40 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 41 H 0.12 4.25 8.14 -2.39 -0.02 4.23 16 42 H 0.43 6.13 9.10 -74.06 -0.67 5.45 16 Total: -1.00 -70.11 361.45 5.36 -64.76 By element: Atomic # 1 Polarization: 25.53 SS G_CDS: 0.37 Total: 25.90 kcal Atomic # 6 Polarization: 1.70 SS G_CDS: 4.83 Total: 6.53 kcal Atomic # 7 Polarization: -68.40 SS G_CDS: -1.07 Total: -69.48 kcal Atomic # 8 Polarization: -71.19 SS G_CDS: -0.46 Total: -71.65 kcal Atomic # 14 Polarization: 42.25 SS G_CDS: 1.70 Total: 43.94 kcal Total: -70.11 5.36 -64.76 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001600858138.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.627 kcal (2) G-P(sol) polarization free energy of solvation -70.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds