Wall clock time and date at job start Tue Mar 31 2020 16:10:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.33623 * 125.81312 * 2 1 4 4 C 1.34211 * 110.92508 * 180.15651 * 3 2 1 5 5 C 1.50706 * 125.42590 * 179.87674 * 4 3 2 6 6 N 1.46903 * 109.46855 * 269.68981 * 5 4 3 7 7 C 1.46903 * 110.99874 * 180.02562 * 6 5 4 8 8 C 1.50699 * 109.47107 * 180.02562 * 7 6 5 9 9 C 1.38328 * 119.96224 * 270.02211 * 8 7 6 10 10 C 1.38279 * 120.13490 * 179.97438 * 9 8 7 11 11 C 1.38120 * 120.07187 * 359.77180 * 10 9 8 12 12 C 1.38861 * 119.92847 * 0.50048 * 11 10 9 13 13 O 1.35751 * 120.06597 * 179.74703 * 12 11 10 14 14 C 1.34829 * 117.00376 * 354.17384 * 13 12 11 15 15 H 1.07998 * 119.99999 * 5.03596 * 14 13 12 16 16 C 1.38657 * 120.00083 * 185.03464 * 14 13 12 17 17 N 1.31555 * 119.99797 * 179.97438 * 16 14 13 18 18 Si 1.86799 * 119.99748 * 0.02562 * 16 14 13 19 19 H 1.48496 * 109.47410 * 90.00109 * 18 16 14 20 20 H 1.48504 * 109.46801 * 209.99865 * 18 16 14 21 21 H 1.48497 * 109.47495 * 329.99577 * 18 16 14 22 22 C 1.38073 * 119.96952 * 89.99651 * 8 7 6 23 23 C 1.34149 * 109.14805 * 359.60815 * 4 3 2 24 24 C 1.36507 * 125.80443 * 179.72904 * 2 1 3 25 25 C 1.47236 * 127.20258 * 359.97438 * 24 2 1 26 26 O 1.21539 * 119.99806 * 359.97438 * 25 24 2 27 27 O 1.34767 * 119.99997 * 180.02562 * 25 24 2 28 28 H 1.08996 * 109.47383 * 270.27002 * 1 2 3 29 29 H 1.09005 * 109.47011 * 30.27478 * 1 2 3 30 30 H 1.09007 * 109.47132 * 150.26654 * 1 2 3 31 31 H 1.08992 * 109.47032 * 149.69186 * 5 4 3 32 32 H 1.08997 * 109.47348 * 29.68705 * 5 4 3 33 33 H 1.00900 * 111.00197 * 303.95575 * 6 5 4 34 34 H 1.08996 * 109.47206 * 59.99892 * 7 6 5 35 35 H 1.08997 * 109.47080 * 299.99811 * 7 6 5 36 36 H 1.08001 * 119.93314 * 359.97438 * 9 8 7 37 37 H 1.07999 * 119.96467 * 180.02562 * 10 9 8 38 38 H 1.08001 * 120.03711 * 180.27572 * 11 10 9 39 39 H 0.96998 * 119.99749 * 179.97438 * 17 16 14 40 40 H 1.08001 * 120.03594 * 0.04940 * 22 8 7 41 41 H 1.08007 * 127.02888 * 180.25164 * 23 4 3 42 42 H 0.96696 * 116.99955 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0836 0.0000 4 6 3.5859 0.7388 -0.0034 5 6 4.7457 1.7011 -0.0071 6 7 5.1234 2.0074 -1.3933 7 6 6.2539 2.9445 -1.4361 8 6 6.6117 3.2347 -2.8709 9 6 7.5403 2.4450 -3.5248 10 6 7.8709 2.7078 -4.8415 11 6 7.2710 3.7574 -5.5094 12 6 6.3426 4.5555 -4.8541 13 8 5.7551 5.5910 -5.5063 14 6 6.2035 5.8660 -6.7478 15 1 6.9379 5.2240 -7.2112 16 6 5.7218 6.9732 -7.4295 17 7 6.1598 7.2418 -8.6405 18 14 4.4521 8.0841 -6.6276 19 1 5.1424 9.1598 -5.8717 20 1 3.5917 8.6895 -7.6757 21 1 3.6127 7.2862 -5.6981 22 6 6.0120 4.2883 -3.5318 23 6 3.6856 -0.5990 0.0029 24 6 2.3056 -1.1071 0.0052 25 6 1.8753 -2.5151 0.0124 26 8 0.6911 -2.7886 0.0147 27 8 2.7945 -3.5006 0.0175 28 1 -0.3634 0.0048 1.0276 29 1 -0.3633 0.8876 -0.5181 30 1 -0.3634 -0.8924 -0.5097 31 1 5.5932 1.2507 0.5094 32 1 4.4566 2.6204 0.5022 33 1 5.3337 1.1639 -1.9056 34 1 7.1118 2.5022 -0.9297 35 1 5.9757 3.8724 -0.9366 36 1 8.0081 1.6214 -3.0058 37 1 8.5959 2.0892 -5.3494 38 1 7.5263 3.9594 -6.5392 39 1 5.8225 8.0161 -9.1176 40 1 5.2874 4.9049 -3.0207 41 1 4.5938 -1.1836 0.0060 42 1 2.4639 -4.4093 0.0225 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608050818.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:23 Heat of formation + Delta-G solvation = -76.861561 kcal Electronic energy + Delta-G solvation = -26329.239937 eV Core-core repulsion = 22241.783441 eV Total energy + Delta-G solvation = -4087.456496 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.99313 -40.17286 -39.26773 -37.36568 -36.43742 -35.85457 -33.45701 -32.67967 -32.36959 -30.82505 -29.41901 -28.22595 -25.86399 -25.21226 -24.38543 -23.38492 -21.93753 -21.78597 -20.56421 -19.79712 -18.45784 -17.82925 -17.47409 -16.92623 -16.87460 -15.93745 -15.74558 -15.66042 -15.17624 -14.97456 -14.82065 -14.44329 -14.00886 -13.84319 -13.74680 -13.53006 -13.31158 -13.30308 -13.21538 -12.66334 -12.57825 -12.41696 -12.13373 -11.93350 -11.87928 -11.73882 -11.32775 -10.96560 -10.88097 -10.79122 -10.69296 -10.20905 -10.14841 -9.40059 -8.96805 -8.87390 -8.58417 -8.19134 -7.39773 -6.41552 -4.08387 0.80229 1.54332 2.01609 2.23592 2.28433 2.71178 2.78944 3.22636 3.26182 3.41742 3.95634 4.18608 4.24312 4.36222 4.58389 4.72233 4.73645 4.82892 4.93297 5.06724 5.10951 5.11587 5.20443 5.21330 5.32335 5.36427 5.55323 5.56415 5.71693 5.73215 5.79075 5.94438 6.09844 6.12925 6.24773 6.49557 6.70158 6.73972 6.78044 7.08834 7.11242 7.26000 7.28893 7.57240 7.58321 7.79644 8.03489 8.93834 9.56362 10.66105 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.014440 B = 0.002212 C = 0.002076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.603423 B =12652.609058 C =13482.207490 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C 0.102 3.898 3 O -0.157 6.157 4 C 0.002 3.998 5 C 0.135 3.865 6 N -0.680 5.680 7 C 0.108 3.892 8 C -0.053 4.053 9 C -0.198 4.198 10 C -0.077 4.077 11 C -0.218 4.218 12 C 0.157 3.843 13 O -0.217 6.217 14 C -0.389 4.389 15 H 0.106 0.894 16 C 0.063 3.937 17 N -0.880 5.880 18 Si 0.905 3.095 19 H -0.273 1.273 20 H -0.282 1.282 21 H -0.259 1.259 22 C -0.165 4.165 23 C -0.162 4.162 24 C -0.242 4.242 25 C 0.562 3.438 26 O -0.521 6.521 27 O -0.509 6.509 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.108 0.892 31 H 0.067 0.933 32 H 0.094 0.906 33 H 0.348 0.652 34 H 0.039 0.961 35 H 0.081 0.919 36 H 0.104 0.896 37 H 0.110 0.890 38 H 0.132 0.868 39 H 0.279 0.721 40 H 0.117 0.883 41 H 0.162 0.838 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.903 -16.790 20.245 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 O -0.052 6.052 4 C -0.047 4.047 5 C 0.006 3.994 6 N -0.313 5.313 7 C -0.020 4.020 8 C -0.053 4.053 9 C -0.218 4.218 10 C -0.095 4.095 11 C -0.237 4.237 12 C 0.105 3.895 13 O -0.122 6.122 14 C -0.465 4.465 15 H 0.123 0.877 16 C -0.140 4.140 17 N -0.518 5.518 18 Si 0.731 3.269 19 H -0.199 1.199 20 H -0.208 1.208 21 H -0.183 1.183 22 C -0.185 4.185 23 C -0.181 4.181 24 C -0.245 4.245 25 C 0.408 3.592 26 O -0.412 6.412 27 O -0.321 6.321 28 H 0.111 0.889 29 H 0.105 0.895 30 H 0.126 0.874 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.167 0.833 34 H 0.058 0.942 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.128 0.872 38 H 0.150 0.850 39 H 0.089 0.911 40 H 0.136 0.864 41 H 0.179 0.821 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -5.815 -15.335 20.047 25.901 hybrid contribution 0.278 -0.919 0.185 0.978 sum -5.537 -16.254 20.233 26.537 Atomic orbital electron populations 1.20710 0.83462 1.05639 1.04654 1.22861 0.94127 0.82964 0.95287 1.83794 1.16822 1.34258 1.70336 1.22148 0.82430 0.94292 1.05821 1.20385 0.90260 0.96977 0.91733 1.60488 1.40775 1.18765 1.11256 1.20814 0.90660 0.96478 0.94063 1.19084 0.96639 0.95431 0.94185 1.20489 1.03242 1.02284 0.95740 1.20749 0.98189 0.96416 0.94192 1.21318 1.01976 0.98625 1.01802 1.19095 0.91174 0.88124 0.91088 1.83575 1.55130 1.43782 1.29743 1.20761 1.25492 1.12165 0.88071 0.87663 1.24465 0.97864 0.96592 0.95086 1.69646 1.42729 1.28341 1.11078 0.86183 0.81150 0.80390 0.79218 1.19897 1.20798 1.18277 1.20022 1.04613 1.01192 0.92652 1.22603 0.96622 0.93139 1.05783 1.20017 0.94141 0.90338 1.19999 1.19612 0.82881 0.85182 0.71567 1.90879 1.18265 1.84466 1.47622 1.84581 1.41987 1.19636 1.85855 0.88919 0.89534 0.87362 0.91566 0.88772 0.83276 0.94241 0.90074 0.87787 0.87229 0.85009 0.91060 0.86450 0.82086 0.72784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.69 9.89 36.00 0.36 -0.33 16 2 C 0.10 1.06 7.38 -34.93 -0.26 0.80 16 3 O -0.16 -1.79 10.52 7.74 0.08 -1.71 16 4 C 0.00 0.02 6.79 -35.75 -0.24 -0.22 16 5 C 0.13 1.20 6.20 -4.97 -0.03 1.17 16 6 N -0.68 -7.80 6.48 -116.34 -0.75 -8.56 16 7 C 0.11 1.29 5.81 -4.97 -0.03 1.26 16 8 C -0.05 -0.85 5.39 -104.65 -0.56 -1.41 16 9 C -0.20 -3.12 9.70 -39.53 -0.38 -3.51 16 10 C -0.08 -1.36 10.04 -39.61 -0.40 -1.76 16 11 C -0.22 -4.65 9.17 -39.39 -0.36 -5.01 16 12 C 0.16 3.61 6.65 -39.11 -0.26 3.35 16 13 O -0.22 -5.74 8.59 0.05 0.00 -5.74 16 14 C -0.39 -10.97 9.95 30.89 0.31 -10.67 16 15 H 0.11 3.02 5.44 -52.49 -0.29 2.74 16 16 C 0.06 1.77 5.49 -17.52 -0.10 1.68 16 17 N -0.88 -25.44 13.96 55.48 0.77 -24.66 16 18 Si 0.91 21.74 28.62 -169.99 -4.86 16.88 16 19 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.13 16 21 H -0.26 -6.26 7.11 56.52 0.40 -5.86 16 22 C -0.16 -3.23 9.64 -39.40 -0.38 -3.61 16 23 C -0.16 -1.58 10.93 -37.45 -0.41 -1.99 16 24 C -0.24 -2.60 6.32 -103.29 -0.65 -3.25 16 25 C 0.56 5.77 8.33 34.39 0.29 6.06 16 26 O -0.52 -6.19 15.64 -19.30 -0.30 -6.50 16 27 O -0.51 -3.86 13.34 -40.67 -0.54 -4.40 16 28 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.11 0.91 6.49 -51.93 -0.34 0.57 16 31 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 33 H 0.35 3.92 8.71 -39.29 -0.34 3.58 16 34 H 0.04 0.40 8.09 -51.93 -0.42 -0.02 16 35 H 0.08 0.94 8.08 -51.93 -0.42 0.52 16 36 H 0.10 1.34 8.06 -52.49 -0.42 0.92 16 37 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 38 H 0.13 2.97 5.64 -52.49 -0.30 2.67 16 39 H 0.28 7.46 8.31 -40.82 -0.34 7.12 16 40 H 0.12 2.21 8.06 -52.49 -0.42 1.79 16 41 H 0.16 1.27 8.06 -52.48 -0.42 0.85 16 42 H 0.41 1.17 9.11 45.56 0.42 1.58 16 LS Contribution 370.81 15.07 5.59 5.59 Total: -1.00 -33.03 370.81 -7.34 -40.36 By element: Atomic # 1 Polarization: 10.38 SS G_CDS: -4.20 Total: 6.18 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -3.12 Total: -17.45 kcal Atomic # 7 Polarization: -33.24 SS G_CDS: 0.02 Total: -33.22 kcal Atomic # 8 Polarization: -17.58 SS G_CDS: -0.76 Total: -18.34 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -4.86 Total: 16.88 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.03 -7.34 -40.36 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608050818.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.500 kcal (2) G-P(sol) polarization free energy of solvation -33.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.526 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.336 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds