Wall clock time and date at job start Tue Mar 31 2020 16:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 119.99852 * 2 1 4 4 N 1.46495 * 109.47184 * 123.69129 * 3 2 1 5 5 C 1.46501 * 120.00398 * 85.15257 * 4 3 2 6 6 C 1.50699 * 109.47130 * 89.99731 * 5 4 3 7 7 H 1.08004 * 120.00126 * 0.02562 * 6 5 4 8 8 C 1.37877 * 120.00360 * 180.02562 * 6 5 4 9 9 N 1.31513 * 119.99594 * 0.02562 * 8 6 5 10 10 Si 1.86793 * 120.00496 * 179.97438 * 8 6 5 11 11 H 1.48500 * 109.47230 * 89.99978 * 10 8 6 12 12 H 1.48502 * 109.47317 * 210.00184 * 10 8 6 13 13 H 1.48497 * 109.47211 * 330.00302 * 10 8 6 14 14 C 1.34780 * 119.99750 * 265.14721 * 4 3 2 15 15 O 1.21569 * 120.00056 * 4.37810 * 14 4 3 16 16 C 1.47658 * 119.99719 * 184.36844 * 14 4 3 17 17 C 1.39502 * 120.19567 * 60.94041 * 16 14 4 18 18 C 1.37948 * 120.01552 * 179.76512 * 17 16 14 19 19 C 1.38460 * 120.42849 * 0.51148 * 18 17 16 20 20 C 1.38295 * 120.39505 * 359.74337 * 19 18 17 21 21 F 1.35099 * 120.01222 * 179.97438 * 20 19 18 22 22 C 1.39377 * 119.96961 * 0.02562 * 20 19 18 23 23 C 1.48252 * 120.20804 * 179.97438 * 22 20 19 24 24 N 1.34113 * 126.68366 * 185.95241 * 23 22 20 25 25 N 1.28985 * 107.26088 * 179.97438 * 24 23 22 26 26 N 1.28729 * 108.96460 * 359.97438 * 25 24 23 27 27 H 0.97001 * 125.32752 * 180.02562 * 26 25 24 28 28 N 1.28872 * 109.33699 * 359.73351 * 26 25 24 29 29 H 1.08003 * 120.00022 * 174.99427 * 1 2 3 30 30 H 1.07994 * 120.00240 * 354.98928 * 1 2 3 31 31 H 1.07995 * 119.99993 * 180.02562 * 2 1 3 32 32 H 1.09005 * 109.47257 * 3.68719 * 3 2 1 33 33 H 1.09001 * 109.47230 * 243.69249 * 3 2 1 34 34 H 1.08993 * 109.47537 * 209.99989 * 5 4 3 35 35 H 1.09004 * 109.46548 * 330.00332 * 5 4 3 36 36 H 0.97003 * 120.00033 * 179.97438 * 9 8 6 37 37 H 1.07992 * 119.99127 * 0.02562 * 17 16 14 38 38 H 1.08004 * 119.78577 * 180.25348 * 18 17 16 39 39 H 1.07992 * 119.80316 * 179.71875 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 7 2.9711 1.3450 1.1492 5 6 4.3026 0.7415 1.0524 6 6 5.2863 1.7715 0.5598 7 1 4.9531 2.7753 0.3412 8 6 6.6116 1.4325 0.3883 9 7 7.0173 0.2100 0.6540 10 14 7.8308 2.7089 -0.2229 11 1 8.4214 3.4243 0.9366 12 1 8.9090 2.0358 -0.9908 13 1 7.1312 3.6814 -1.1004 14 6 2.5813 1.9369 2.2956 15 8 1.4494 2.3670 2.4032 16 6 3.5290 2.0627 3.4208 17 6 4.7111 2.7869 3.2650 18 6 5.5916 2.9061 4.3202 19 6 5.3161 2.3016 5.5350 20 6 4.1520 1.5752 5.7071 21 9 3.8912 0.9882 6.8957 22 6 3.2485 1.4481 4.6535 23 6 1.9992 0.6701 4.8320 24 7 1.0990 0.3713 3.8838 25 7 0.1640 -0.3161 4.4467 26 7 0.4424 -0.4570 5.6956 27 1 -0.1016 -0.9349 6.3411 28 7 1.5600 0.1309 5.9527 29 1 -0.5400 -0.9318 -0.0816 30 1 -0.5400 0.9317 0.0817 31 1 1.8500 -0.9353 -0.0004 32 1 1.3569 2.1326 0.0661 33 1 2.6396 1.3921 -0.9212 34 1 4.6119 0.3842 2.0345 35 1 4.2724 -0.0950 0.3542 36 1 7.9496 -0.0287 0.5329 37 1 4.9349 3.2579 2.3193 38 1 6.5037 3.4711 4.1966 39 1 6.0147 2.3977 6.3530 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609055592.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:59:25 Heat of formation + Delta-G solvation = 90.462733 kcal Electronic energy + Delta-G solvation = -29016.992308 eV Core-core repulsion = 24877.916736 eV Total energy + Delta-G solvation = -4139.075572 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.119 amu Computer time = 3.24 seconds Orbital eigenvalues (eV) -49.91153 -45.44551 -41.21000 -39.16312 -36.99672 -35.42263 -35.10881 -34.63659 -33.84412 -32.00195 -31.34560 -29.24431 -27.46531 -25.82234 -25.68169 -24.88985 -23.97830 -22.72961 -21.15574 -20.45028 -20.00095 -18.72127 -18.47401 -18.16686 -17.68342 -17.53045 -17.03101 -16.86279 -16.57815 -16.16404 -15.83265 -15.42690 -15.32196 -14.94130 -14.60777 -14.29057 -14.13363 -13.87235 -13.58285 -13.35857 -13.28898 -13.03878 -12.77340 -12.65073 -12.55870 -12.45138 -12.35478 -12.20575 -12.02039 -11.98541 -11.88111 -11.58407 -10.84982 -10.51978 -10.20697 -9.87314 -9.63557 -9.36888 -8.09750 -6.23602 -0.51409 0.04716 0.17482 1.26350 1.37252 1.40421 1.50240 1.54605 1.62559 1.84669 2.36048 2.49958 2.56485 2.74477 3.02095 3.20658 3.23552 3.65164 3.92634 4.08139 4.14166 4.18279 4.29978 4.33298 4.40195 4.55542 4.69641 4.86766 4.89723 4.93295 5.04887 5.08301 5.27307 5.29278 5.39176 5.61363 5.74299 5.74788 5.80014 5.86723 5.96814 6.13405 6.62482 6.88449 7.11666 7.36273 7.49138 8.96349 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.010693 B = 0.006026 C = 0.004268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2617.891706 B = 4645.800316 C = 6559.477202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.175 4.175 3 C 0.147 3.853 4 N -0.587 5.587 5 C 0.258 3.742 6 C -0.533 4.533 7 H 0.065 0.935 8 C 0.029 3.971 9 N -0.920 5.920 10 Si 0.950 3.050 11 H -0.259 1.259 12 H -0.292 1.292 13 H -0.270 1.270 14 C 0.567 3.433 15 O -0.560 6.560 16 C -0.072 4.072 17 C -0.076 4.076 18 C -0.068 4.068 19 C -0.127 4.127 20 C 0.113 3.887 21 F -0.125 7.125 22 C -0.046 4.046 23 C 0.193 3.807 24 N -0.259 5.259 25 N -0.062 5.062 26 N -0.203 5.203 27 H 0.493 0.507 28 N -0.282 5.282 29 H 0.111 0.889 30 H 0.096 0.904 31 H 0.097 0.903 32 H 0.076 0.924 33 H 0.086 0.914 34 H 0.014 0.986 35 H 0.014 0.986 36 H 0.266 0.734 37 H 0.149 0.851 38 H 0.174 0.826 39 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.385 1.478 9.337 10.879 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.194 4.194 3 C 0.025 3.975 4 N -0.316 5.316 5 C 0.137 3.863 6 C -0.571 4.571 7 H 0.083 0.917 8 C -0.172 4.172 9 N -0.559 5.559 10 Si 0.775 3.225 11 H -0.184 1.184 12 H -0.218 1.218 13 H -0.195 1.195 14 C 0.354 3.646 15 O -0.440 6.440 16 C -0.078 4.078 17 C -0.095 4.095 18 C -0.087 4.087 19 C -0.145 4.145 20 C 0.092 3.908 21 F -0.103 7.103 22 C -0.051 4.051 23 C -0.087 4.087 24 N -0.131 5.131 25 N -0.057 5.057 26 N -0.053 5.053 27 H 0.352 0.648 28 N -0.136 5.136 29 H 0.129 0.871 30 H 0.114 0.886 31 H 0.115 0.885 32 H 0.095 0.905 33 H 0.104 0.896 34 H 0.032 0.968 35 H 0.032 0.968 36 H 0.075 0.925 37 H 0.166 0.834 38 H 0.191 0.809 39 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -6.419 1.244 9.201 11.288 hybrid contribution 0.662 -0.222 0.176 0.720 sum -5.757 1.023 9.377 11.050 Atomic orbital electron populations 1.23819 0.95155 1.02239 0.98628 1.23126 0.96653 0.98107 1.01505 1.20509 0.92271 0.95958 0.88725 1.48026 1.16837 1.55073 1.11671 1.19008 0.77694 0.93220 0.96340 1.21560 0.93111 0.97404 1.45024 0.91723 1.25583 0.99734 0.96834 0.95012 1.70048 1.17202 1.19850 1.48816 0.85675 0.78529 0.79226 0.79083 1.18411 1.21832 1.19494 1.18038 0.86087 0.77799 0.82646 1.90668 1.20152 1.50903 1.82307 1.19748 0.96558 0.99250 0.92207 1.21738 0.90444 0.96683 1.00633 1.21486 0.99540 0.97126 0.90521 1.21543 0.95289 0.97147 1.00540 1.17482 0.95380 0.97580 0.80399 1.91522 1.94100 1.81932 1.42761 1.17287 0.91210 1.02019 0.94612 1.23542 0.97972 1.01129 0.86045 1.76454 0.99972 1.10850 1.25856 1.78851 1.20316 1.13834 0.92726 1.47774 1.13994 1.34610 1.08951 0.64753 1.74983 1.00406 1.13307 1.24875 0.87072 0.88604 0.88501 0.90517 0.89563 0.96843 0.96788 0.92520 0.83371 0.80868 0.80098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.00 14.32 67.78 0.97 -4.03 16 2 C -0.17 -6.24 9.84 25.65 0.25 -5.98 16 3 C 0.15 5.72 5.87 85.63 0.50 6.22 16 4 N -0.59 -25.64 2.44 -834.15 -2.04 -27.67 16 5 C 0.26 12.39 4.77 85.63 0.41 12.80 16 6 C -0.53 -25.57 6.79 25.60 0.17 -25.40 16 7 H 0.06 3.06 7.26 -2.91 -0.02 3.03 16 8 C 0.03 1.42 5.46 84.65 0.46 1.88 16 9 N -0.92 -48.69 13.29 21.45 0.28 -48.41 16 10 Si 0.95 38.18 29.54 68.60 2.03 40.20 16 11 H -0.26 -9.66 7.11 99.48 0.71 -8.95 16 12 H -0.29 -12.03 7.11 99.48 0.71 -11.32 16 13 H -0.27 -10.72 7.11 99.48 0.71 -10.01 16 14 C 0.57 25.11 5.59 86.73 0.48 25.59 16 15 O -0.56 -26.64 14.79 -3.93 -0.06 -26.70 16 16 C -0.07 -2.93 4.29 -19.92 -0.09 -3.02 16 17 C -0.08 -2.74 8.00 22.51 0.18 -2.56 16 18 C -0.07 -1.89 10.02 22.25 0.22 -1.67 16 19 C -0.13 -3.28 10.01 22.34 0.22 -3.05 16 20 C 0.11 3.64 7.27 22.56 0.16 3.81 16 21 F -0.12 -3.87 15.84 44.97 0.71 -3.16 16 22 C -0.05 -1.78 5.91 -19.77 -0.12 -1.90 16 23 C 0.19 7.46 7.72 137.27 1.06 8.52 16 24 N -0.26 -10.53 9.22 -52.26 -0.48 -11.01 16 25 N -0.06 -2.05 13.47 37.02 0.50 -1.55 16 26 N -0.20 -5.14 7.90 37.02 0.29 -4.84 16 27 H 0.49 6.50 8.96 -347.52 -3.12 3.38 16 28 N -0.28 -9.04 11.12 -52.21 -0.58 -9.62 16 29 H 0.11 2.93 8.06 -2.91 -0.02 2.91 16 30 H 0.10 2.97 7.84 -2.91 -0.02 2.95 16 31 H 0.10 3.56 8.06 -2.91 -0.02 3.53 16 32 H 0.08 2.95 6.99 -2.38 -0.02 2.94 16 33 H 0.09 3.23 8.11 -2.39 -0.02 3.21 16 34 H 0.01 0.71 6.83 -2.39 -0.02 0.69 16 35 H 0.01 0.73 8.07 -2.39 -0.02 0.71 16 36 H 0.27 13.41 8.31 -92.71 -0.77 12.63 16 37 H 0.15 5.58 5.82 -2.91 -0.02 5.56 16 38 H 0.17 3.57 8.06 -2.91 -0.02 3.55 16 39 H 0.18 3.15 8.06 -2.91 -0.02 3.13 16 Total: -1.00 -67.19 345.19 3.57 -63.62 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: -1.99 Total: 17.93 kcal Atomic # 6 Polarization: 6.30 SS G_CDS: 4.90 Total: 11.20 kcal Atomic # 7 Polarization: -101.09 SS G_CDS: -2.02 Total: -103.11 kcal Atomic # 8 Polarization: -26.64 SS G_CDS: -0.06 Total: -26.70 kcal Atomic # 9 Polarization: -3.87 SS G_CDS: 0.71 Total: -3.16 kcal Atomic # 14 Polarization: 38.18 SS G_CDS: 2.03 Total: 40.20 kcal Total: -67.19 3.57 -63.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609055592.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.086 kcal (2) G-P(sol) polarization free energy of solvation -67.194 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.893 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 90.463 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.24 seconds