Wall clock time and date at job start Tue Mar 31 2020 17:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09010 * 109.47374 * 2 1 4 4 C 1.53002 * 109.47147 * 119.99470 * 2 1 3 5 5 N 1.46502 * 109.47536 * 295.43270 * 4 2 1 6 6 C 1.46504 * 119.99693 * 285.52865 * 5 4 2 7 7 C 1.52998 * 117.49826 * 4.61722 * 6 5 4 8 8 C 1.52997 * 60.00182 * 252.51607 * 7 6 5 9 9 S 1.65596 * 120.00138 * 105.51681 * 5 4 2 10 10 O 1.42095 * 104.28031 * 206.07578 * 9 5 4 11 11 O 1.42099 * 104.28096 * 333.93550 * 9 5 4 12 12 C 1.81400 * 104.44662 * 90.00462 * 9 5 4 13 13 C 1.53001 * 109.47271 * 173.73967 * 12 9 5 14 14 C 1.50698 * 115.55060 * 39.70521 * 13 12 9 15 15 H 1.07999 * 120.00451 * 264.51945 * 14 13 12 16 16 C 1.37879 * 119.99954 * 84.51461 * 14 13 12 17 17 N 1.31513 * 119.99908 * 1.81966 * 16 14 13 18 18 Si 1.86794 * 120.00272 * 181.82041 * 16 14 13 19 19 H 1.48503 * 109.47362 * 89.99922 * 18 16 14 20 20 H 1.48502 * 109.47491 * 210.00155 * 18 16 14 21 21 H 1.48501 * 109.47038 * 330.00261 * 18 16 14 22 22 C 1.52999 * 117.49614 * 253.99784 * 13 12 9 23 23 C 1.52993 * 60.00113 * 252.50979 * 22 13 12 24 24 C 1.50702 * 109.47423 * 239.99779 * 2 1 3 25 25 O 1.20827 * 119.99929 * 240.00363 * 24 2 1 26 26 O 1.34223 * 119.99886 * 60.00233 * 24 2 1 27 27 H 1.08999 * 109.46840 * 60.39434 * 1 2 3 28 28 H 1.08995 * 109.46852 * 180.38926 * 1 2 3 29 29 H 1.09000 * 109.46952 * 300.39690 * 1 2 3 30 30 H 1.09001 * 109.46902 * 55.42864 * 4 2 1 31 31 H 1.09001 * 109.47319 * 175.42801 * 4 2 1 32 32 H 1.08999 * 115.54994 * 150.33246 * 6 5 4 33 33 H 1.08997 * 117.50382 * 0.02562 * 7 6 5 34 34 H 1.09002 * 117.49744 * 145.02556 * 7 6 5 35 35 H 1.08997 * 117.50073 * 252.51194 * 8 7 6 36 36 H 1.09003 * 117.51464 * 107.48130 * 8 7 6 37 37 H 1.09003 * 109.47398 * 293.73977 * 12 9 5 38 38 H 1.09002 * 109.47203 * 53.74087 * 12 9 5 39 39 H 0.97004 * 120.00098 * 185.02099 * 17 16 14 40 40 H 1.08999 * 117.50371 * 0.02562 * 22 13 12 41 41 H 1.09007 * 117.49616 * 145.02036 * 22 13 12 42 42 H 1.09000 * 117.50378 * 252.51191 * 23 22 13 43 43 H 1.09004 * 117.52074 * 107.48153 * 23 22 13 44 44 H 0.96701 * 116.99853 * 180.02562 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7211 1.2493 5 7 1.6436 0.0301 2.4430 6 6 2.3336 1.2758 2.7872 7 6 3.3847 1.7959 1.8045 8 6 3.8201 1.1860 3.1384 9 16 0.4153 -0.5286 3.4029 10 8 -0.1013 0.6392 4.0262 11 8 -0.3876 -1.3076 2.5269 12 6 1.2402 -1.5888 4.6220 13 6 0.2242 -2.0467 5.6702 14 6 -1.1412 -2.4017 5.1404 15 1 -1.9327 -1.6671 5.1517 16 6 -1.3799 -3.6645 4.6409 17 7 -0.4265 -4.5702 4.6598 18 14 -3.0575 -4.0890 3.9374 19 1 -3.0775 -3.7810 2.4848 20 1 -3.3281 -5.5350 4.1406 21 1 -4.1006 -3.2885 4.6276 22 6 0.2991 -1.4018 7.0556 23 6 0.7509 -2.8505 6.8608 24 6 2.0324 -0.7104 -1.2304 25 8 2.7270 -1.6929 -1.1195 26 8 1.7082 -0.2519 -2.4495 27 1 -0.3633 0.5077 -0.8935 28 1 -0.3633 -1.0276 0.0070 29 1 -0.3633 0.5200 0.8864 30 1 1.6113 -1.7224 1.2913 31 1 3.1269 -0.7926 1.2093 32 1 1.7341 2.0134 3.3205 33 1 3.5625 1.2116 0.9017 34 1 3.4767 2.8760 1.6910 35 1 4.1986 1.8649 3.9025 36 1 4.2844 0.2001 3.1136 37 1 1.6620 -2.4596 4.1201 38 1 2.0381 -1.0288 5.1098 39 1 -0.5702 -5.4344 4.2433 40 1 1.0719 -0.6510 7.2203 41 1 -0.6395 -1.2341 7.5841 42 1 0.1097 -3.6359 7.2610 43 1 1.8212 -3.0535 6.8970 44 1 2.0537 -0.7411 -3.2087 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001609741814.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:33 Heat of formation + Delta-G solvation = -133.265450 kcal Electronic energy + Delta-G solvation = -28519.169767 eV Core-core repulsion = 24564.711367 eV Total energy + Delta-G solvation = -3954.458400 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.50546 -39.40641 -38.54017 -37.97211 -37.14594 -36.71063 -35.61330 -34.11135 -32.81944 -29.88575 -27.75044 -27.47543 -25.47009 -23.34878 -22.96139 -22.63727 -21.53246 -21.09289 -19.83741 -19.06066 -18.76700 -18.32009 -17.76566 -17.14099 -16.92942 -16.69939 -16.55528 -16.01360 -15.59960 -15.46611 -15.17638 -14.85521 -14.71121 -13.97726 -13.80365 -13.75787 -13.59822 -13.26725 -13.04038 -13.02364 -12.93066 -12.90270 -12.80430 -12.69191 -12.54649 -12.43619 -12.25977 -12.08668 -12.05441 -11.86345 -11.81481 -11.53340 -11.48438 -11.19143 -10.97076 -10.48678 -10.04196 -9.66483 -8.24298 -6.42917 -0.50761 1.14518 1.34010 1.41852 1.44584 1.80291 2.18928 2.38357 2.89832 3.06665 3.11302 3.29262 3.47680 3.51311 3.68457 3.86660 3.92495 4.06454 4.11027 4.15414 4.27734 4.33227 4.42142 4.58253 4.59591 4.64110 4.67291 4.79824 4.83449 4.84795 4.92840 4.97866 5.11145 5.17582 5.27115 5.27660 5.33323 5.39278 5.56924 5.62175 5.66395 5.68919 6.19255 6.67601 6.96757 7.35643 8.82670 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.012611 B = 0.005414 C = 0.004332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2219.731571 B = 5170.827198 C = 6461.551656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.098 4.098 3 H 0.144 0.856 4 C 0.132 3.868 5 N -0.972 5.972 6 C 0.045 3.955 7 C -0.162 4.162 8 C -0.190 4.190 9 S 2.634 3.366 10 O -0.992 6.992 11 O -0.971 6.971 12 C -0.559 4.559 13 C 0.011 3.989 14 C -0.551 4.551 15 H 0.049 0.951 16 C 0.060 3.940 17 N -0.886 5.886 18 Si 0.923 3.077 19 H -0.276 1.276 20 H -0.272 1.272 21 H -0.266 1.266 22 C -0.189 4.189 23 C -0.139 4.139 24 C 0.497 3.503 25 O -0.545 6.545 26 O -0.505 6.505 27 H 0.089 0.911 28 H 0.051 0.949 29 H 0.051 0.949 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.137 0.863 33 H 0.103 0.897 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.097 0.903 37 H 0.115 0.885 38 H 0.131 0.869 39 H 0.265 0.735 40 H 0.101 0.899 41 H 0.080 0.920 42 H 0.064 0.936 43 H 0.083 0.917 44 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.672 12.243 -9.819 18.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 H 0.161 0.839 4 C 0.006 3.994 5 N -0.806 5.806 6 C -0.061 4.061 7 C -0.201 4.201 8 C -0.229 4.229 9 S 2.733 3.267 10 O -0.983 6.983 11 O -0.961 6.961 12 C -0.691 4.691 13 C 0.009 3.991 14 C -0.589 4.589 15 H 0.067 0.933 16 C -0.144 4.144 17 N -0.522 5.522 18 Si 0.748 3.252 19 H -0.202 1.202 20 H -0.197 1.197 21 H -0.190 1.190 22 C -0.226 4.226 23 C -0.178 4.178 24 C 0.340 3.660 25 O -0.436 6.436 26 O -0.319 6.319 27 H 0.108 0.892 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.094 0.906 31 H 0.119 0.881 32 H 0.154 0.846 33 H 0.121 0.879 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.115 0.885 37 H 0.133 0.867 38 H 0.149 0.851 39 H 0.075 0.925 40 H 0.119 0.881 41 H 0.099 0.901 42 H 0.083 0.917 43 H 0.102 0.898 44 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 9.787 12.186 -9.577 18.331 hybrid contribution -0.288 -1.507 -0.480 1.608 sum 9.499 10.679 -10.058 17.477 Atomic orbital electron populations 1.21759 0.92084 1.02979 1.03106 1.21499 0.98551 1.02764 0.89023 0.83887 1.21112 1.01825 0.94122 0.82351 1.57260 1.54890 1.32521 1.35949 1.21796 0.90053 0.87759 1.06522 1.23460 0.99717 1.02834 0.94062 1.23554 0.95988 1.03605 0.99787 1.04165 0.73946 0.73995 0.74568 1.93417 1.77773 1.48367 1.78694 1.93499 1.65801 1.72852 1.63944 1.29936 1.10209 1.13943 1.15020 1.18361 0.93125 1.01880 0.85759 1.20739 0.95606 0.98152 1.44353 0.93251 1.25404 0.99396 0.95572 0.94075 1.70024 1.34239 1.05949 1.41941 0.86085 0.81708 0.77857 0.79590 1.20163 1.19695 1.19024 1.23201 1.02225 0.95991 1.01169 1.22424 0.98836 0.92870 1.03636 1.23256 0.75787 0.81586 0.85376 1.90734 1.37747 1.27268 1.87831 1.84482 1.71909 1.58820 1.16643 0.89219 0.93002 0.92952 0.90648 0.88079 0.84552 0.87863 0.85423 0.86125 0.88480 0.86656 0.85074 0.92525 0.88079 0.90139 0.91716 0.89846 0.70929 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.00 7.81 71.98 0.56 -3.44 16 2 C -0.10 -2.34 2.55 -11.54 -0.03 -2.37 16 3 H 0.14 2.57 6.01 -2.38 -0.01 2.56 16 4 C 0.13 3.69 3.59 86.38 0.31 4.00 16 5 N -0.97 -28.92 2.59 -493.37 -1.28 -30.20 16 6 C 0.04 1.03 6.21 44.99 0.28 1.31 16 7 C -0.16 -2.47 8.77 30.59 0.27 -2.21 16 8 C -0.19 -3.29 10.27 30.59 0.31 -2.97 16 9 S 2.63 108.68 4.05 -56.49 -0.23 108.45 16 10 O -0.99 -44.33 16.79 -127.65 -2.14 -46.47 16 11 O -0.97 -46.68 13.70 -127.65 -1.75 -48.43 16 12 C -0.56 -23.29 6.29 71.98 0.45 -22.84 16 13 C 0.01 0.52 1.70 -52.93 -0.09 0.43 16 14 C -0.55 -30.76 6.89 25.60 0.18 -30.59 16 15 H 0.05 2.86 7.81 -2.91 -0.02 2.84 16 16 C 0.06 3.38 5.43 84.66 0.46 3.84 16 17 N -0.89 -50.15 12.73 21.45 0.27 -49.87 16 18 Si 0.92 45.49 29.54 68.60 2.03 47.51 16 19 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 20 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 21 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 22 C -0.19 -8.01 9.88 30.59 0.30 -7.71 16 23 C -0.14 -6.33 9.27 30.59 0.28 -6.05 16 24 C 0.50 11.54 7.63 71.24 0.54 12.08 16 25 O -0.55 -16.01 16.69 21.96 0.37 -15.64 16 26 O -0.51 -8.25 13.32 -51.35 -0.68 -8.93 16 27 H 0.09 2.01 8.11 -2.39 -0.02 1.99 16 28 H 0.05 1.73 7.74 -2.39 -0.02 1.71 16 29 H 0.05 1.65 6.71 -2.39 -0.02 1.63 16 30 H 0.08 2.55 7.24 -2.39 -0.02 2.53 16 31 H 0.10 2.38 7.03 -2.39 -0.02 2.37 16 32 H 0.14 3.30 7.35 -2.39 -0.02 3.28 16 33 H 0.10 1.51 5.50 -2.39 -0.01 1.49 16 34 H 0.13 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.12 1.64 8.14 -2.39 -0.02 1.62 16 36 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.12 4.97 8.14 -2.39 -0.02 4.96 16 38 H 0.13 4.41 7.95 -2.39 -0.02 4.39 16 39 H 0.27 14.37 8.32 -92.71 -0.77 13.60 16 40 H 0.10 3.60 8.08 -2.39 -0.02 3.58 16 41 H 0.08 3.43 8.14 -2.38 -0.02 3.41 16 42 H 0.06 3.21 8.14 -2.39 -0.02 3.19 16 43 H 0.08 3.42 8.14 -2.38 -0.02 3.40 16 44 H 0.43 3.24 9.10 -74.06 -0.67 2.56 16 Total: -1.00 -73.89 370.97 0.76 -73.13 By element: Atomic # 1 Polarization: 26.62 SS G_CDS: 0.35 Total: 26.96 kcal Atomic # 6 Polarization: -60.34 SS G_CDS: 3.83 Total: -56.51 kcal Atomic # 7 Polarization: -79.07 SS G_CDS: -1.00 Total: -80.07 kcal Atomic # 8 Polarization: -115.26 SS G_CDS: -4.21 Total: -119.47 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.51 kcal Atomic # 16 Polarization: 108.68 SS G_CDS: -0.23 Total: 108.45 kcal Total: -73.89 0.76 -73.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609741814.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.139 kcal (2) G-P(sol) polarization free energy of solvation -73.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.265 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds