Wall clock time and date at job start Tue Mar 31 2020 17:54:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09009 * 109.47110 * 2 1 4 4 C 1.52998 * 109.47444 * 240.00416 * 2 1 3 5 5 N 1.46504 * 109.46973 * 61.53120 * 4 2 1 6 6 C 1.46495 * 120.00143 * 83.33886 * 5 4 2 7 7 C 1.53006 * 117.49767 * 2.27915 * 6 5 4 8 8 C 1.53004 * 117.49963 * 293.62570 * 6 5 4 9 9 S 1.65604 * 119.99929 * 263.33787 * 5 4 2 10 10 O 1.42107 * 104.27352 * 153.92936 * 9 5 4 11 11 O 1.42102 * 104.27668 * 26.07340 * 9 5 4 12 12 C 1.81399 * 104.45104 * 270.00052 * 9 5 4 13 13 C 1.52994 * 109.47183 * 172.81365 * 12 9 5 14 14 C 1.50701 * 115.55265 * 39.91451 * 13 12 9 15 15 H 1.07996 * 120.00040 * 272.47752 * 14 13 12 16 16 C 1.37881 * 119.99707 * 92.47121 * 14 13 12 17 17 N 1.31515 * 119.99735 * 173.40079 * 16 14 13 18 18 Si 1.86803 * 120.00119 * 353.40657 * 16 14 13 19 19 H 1.48497 * 109.47104 * 93.98206 * 18 16 14 20 20 H 1.48501 * 109.46994 * 213.98387 * 18 16 14 21 21 H 1.48503 * 109.47013 * 333.98300 * 18 16 14 22 22 C 1.52999 * 117.49768 * 254.20811 * 13 12 9 23 23 C 1.52995 * 60.00365 * 252.51054 * 22 13 12 24 24 C 1.50698 * 109.47349 * 120.00118 * 2 1 3 25 25 O 1.20831 * 119.99938 * 120.00146 * 24 2 1 26 26 O 1.34233 * 120.00164 * 299.99982 * 24 2 1 27 27 H 1.09003 * 109.46829 * 181.81712 * 1 2 3 28 28 H 1.09006 * 109.47106 * 301.81317 * 1 2 3 29 29 H 1.08995 * 109.47426 * 61.81423 * 1 2 3 30 30 H 1.09000 * 109.46802 * 301.53728 * 4 2 1 31 31 H 1.08997 * 109.47579 * 181.53379 * 4 2 1 32 32 H 1.09005 * 115.55372 * 147.94769 * 6 5 4 33 33 H 1.08996 * 117.49732 * 0.02562 * 7 6 5 34 34 H 1.09004 * 117.49670 * 145.01457 * 7 6 5 35 35 H 1.09000 * 117.49842 * 214.97826 * 8 6 5 36 36 H 1.08998 * 117.49516 * 359.96740 * 8 6 5 37 37 H 1.09004 * 109.46769 * 292.80984 * 12 9 5 38 38 H 1.09000 * 109.46955 * 52.80877 * 12 9 5 39 39 H 0.97004 * 119.99915 * 180.02562 * 17 16 14 40 40 H 1.09003 * 117.49809 * 0.02562 * 22 13 12 41 41 H 1.08999 * 117.50060 * 145.01401 * 22 13 12 42 42 H 1.08998 * 117.49626 * 252.51259 * 23 22 13 43 43 H 1.08999 * 117.51942 * 107.47568 * 23 22 13 44 44 H 0.96700 * 116.99442 * 179.97438 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7211 -1.2492 5 7 1.5821 -0.0094 -2.4451 6 6 2.3292 1.1501 -2.9385 7 6 3.6083 1.5358 -2.1928 8 6 2.3532 2.4016 -2.0586 9 16 0.2199 -0.5157 -3.2392 10 8 -0.2646 0.6539 -3.8846 11 8 -0.5465 -1.1706 -2.2376 12 6 0.8262 -1.7120 -4.4606 13 6 -0.3628 -2.3901 -5.1441 14 6 -1.5277 -1.4897 -5.4658 15 1 -2.2997 -1.3216 -4.7295 16 6 -1.6078 -0.8806 -6.7002 17 7 -2.6845 -0.2008 -7.0293 18 14 -0.1872 -1.0209 -7.9050 19 1 -0.4279 -2.1627 -8.8234 20 1 -0.0801 0.2336 -8.6923 21 1 1.0759 -1.2451 -7.1569 22 6 -0.6742 -3.8353 -4.7501 23 6 -0.0614 -3.5306 -6.1184 24 6 2.0324 -0.7104 1.2304 25 8 2.7271 -1.6928 1.1195 26 8 1.7081 -0.2519 2.4496 27 1 -0.3633 -1.0272 0.0326 28 1 -0.3634 0.5418 0.8733 29 1 -0.3634 0.4854 -0.9057 30 1 1.6544 -1.7405 -1.2632 31 1 3.1297 -0.7450 -1.2356 32 1 2.3134 1.2946 -4.0188 33 1 3.8941 0.9265 -1.3354 34 1 4.4339 1.9343 -2.7825 35 1 2.3535 3.3694 -2.5600 36 1 1.8127 2.3623 -1.1129 37 1 1.4283 -1.1949 -5.2077 38 1 1.4355 -2.4648 -3.9604 39 1 -2.7410 0.2274 -7.8979 40 1 -0.0322 -4.3029 -4.0035 41 1 -1.7218 -4.1351 -4.7232 42 1 -0.7058 -3.6300 -6.9918 43 1 0.9841 -3.7976 -6.2727 44 1 2.0537 -0.7411 3.2088 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001609741815.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:54:38 Heat of formation + Delta-G solvation = -99.024685 kcal Electronic energy + Delta-G solvation = -28542.530583 eV Core-core repulsion = 24589.556973 eV Total energy + Delta-G solvation = -3952.973609 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -40.60533 -38.51834 -37.13223 -36.53324 -36.25602 -35.12037 -34.47615 -32.21293 -31.82882 -28.53604 -26.65623 -25.56538 -24.49724 -22.50577 -21.75752 -21.65498 -20.37586 -19.49078 -18.74692 -18.05978 -17.44334 -16.83950 -16.44438 -16.11998 -15.72654 -15.46939 -14.99719 -14.87639 -14.37696 -14.04461 -13.90350 -13.67987 -13.02887 -12.94440 -12.68754 -12.58821 -12.50487 -12.16983 -12.05955 -11.76865 -11.66904 -11.47746 -11.26234 -11.22456 -11.10020 -10.89780 -10.84368 -10.66497 -10.60679 -10.49327 -10.37947 -10.35819 -10.04316 -9.76736 -9.15262 -8.82261 -8.66596 -8.46878 -6.21987 -4.33078 0.90033 2.04535 2.79939 3.20858 3.27925 3.30309 3.33114 3.74865 4.32134 4.49099 4.57859 4.58548 4.66924 4.74156 4.82507 4.92155 4.95153 5.01924 5.08488 5.14106 5.25859 5.49220 5.49817 5.62492 5.64662 5.74674 5.87410 5.89268 5.97172 6.01948 6.03969 6.06002 6.16475 6.25075 6.30715 6.39905 6.50344 6.58059 6.72418 6.81270 7.04735 7.56620 7.71588 8.30478 8.81135 9.40302 10.89422 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.017488 B = 0.004597 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1600.674547 B = 6089.799973 C = 6604.838598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.107 4.107 3 H 0.113 0.887 4 C 0.135 3.865 5 N -0.984 5.984 6 C 0.090 3.910 7 C -0.188 4.188 8 C -0.193 4.193 9 S 2.623 3.377 10 O -0.925 6.925 11 O -0.954 6.954 12 C -0.584 4.584 13 C 0.009 3.991 14 C -0.535 4.535 15 H 0.087 0.913 16 C 0.101 3.899 17 N -0.872 5.872 18 Si 0.876 3.124 19 H -0.275 1.275 20 H -0.288 1.288 21 H -0.258 1.258 22 C -0.173 4.173 23 C -0.189 4.189 24 C 0.490 3.510 25 O -0.517 6.517 26 O -0.514 6.514 27 H 0.082 0.918 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.095 0.905 31 H 0.087 0.913 32 H 0.134 0.866 33 H 0.098 0.902 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.098 0.902 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.269 0.731 40 H 0.076 0.924 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.075 0.925 44 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.433 1.727 12.782 18.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.128 4.128 3 H 0.131 0.869 4 C 0.009 3.991 5 N -0.816 5.816 6 C -0.017 4.017 7 C -0.226 4.226 8 C -0.232 4.232 9 S 2.720 3.280 10 O -0.915 6.915 11 O -0.944 6.944 12 C -0.715 4.715 13 C 0.006 3.994 14 C -0.573 4.573 15 H 0.105 0.895 16 C -0.106 4.106 17 N -0.506 5.506 18 Si 0.703 3.297 19 H -0.201 1.201 20 H -0.214 1.214 21 H -0.183 1.183 22 C -0.210 4.210 23 C -0.227 4.227 24 C 0.332 3.668 25 O -0.406 6.406 26 O -0.325 6.325 27 H 0.101 0.899 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.113 0.887 31 H 0.106 0.894 32 H 0.152 0.848 33 H 0.117 0.883 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.117 0.883 37 H 0.139 0.861 38 H 0.124 0.876 39 H 0.079 0.921 40 H 0.094 0.906 41 H 0.112 0.888 42 H 0.110 0.890 43 H 0.093 0.907 44 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 12.480 2.092 12.442 17.746 hybrid contribution 1.595 -0.708 -0.556 1.831 sum 14.074 1.384 11.886 18.474 Atomic orbital electron populations 1.21925 0.90164 1.04856 1.02811 1.21682 1.00212 1.01376 0.89548 0.86913 1.21073 1.00695 0.95334 0.81973 1.57918 1.47295 1.38864 1.37522 1.21376 0.96688 0.86703 0.96929 1.23314 0.91975 1.03852 1.03481 1.23492 1.00794 0.96201 1.02748 1.04944 0.72478 0.75985 0.74608 1.93587 1.75803 1.45584 1.76565 1.93543 1.66208 1.78120 1.56532 1.30344 1.09023 1.16077 1.16069 1.18755 0.93017 0.88138 0.99467 1.20398 1.06177 1.28374 1.02310 0.89464 1.24924 0.95027 0.93111 0.97493 1.69883 1.26863 1.32117 1.21745 0.86918 0.84033 0.77363 0.81394 1.20117 1.21449 1.18259 1.22965 1.01091 1.00063 0.96855 1.22946 0.99638 1.05815 0.94305 1.23444 0.76367 0.82279 0.84699 1.90717 1.36284 1.26202 1.87349 1.84555 1.72295 1.58878 1.16810 0.89928 0.91886 0.91123 0.88692 0.89434 0.84824 0.88349 0.87948 0.87867 0.88327 0.86101 0.87567 0.92108 0.90566 0.88754 0.88968 0.90670 0.73354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 7.53 37.16 0.28 -1.68 16 2 C -0.11 -1.29 2.83 -91.77 -0.26 -1.55 16 3 H 0.11 1.16 5.32 -51.92 -0.28 0.89 16 4 C 0.14 1.74 3.64 -4.04 -0.01 1.73 16 5 N -0.98 -14.39 2.66 -107.30 -0.29 -14.68 16 6 C 0.09 1.15 5.92 -67.93 -0.40 0.75 16 7 C -0.19 -1.78 9.59 -26.69 -0.26 -2.04 16 8 C -0.19 -2.10 9.90 -26.69 -0.26 -2.37 16 9 S 2.62 51.82 3.78 -107.50 -0.41 51.41 16 10 O -0.93 -21.94 16.46 -57.54 -0.95 -22.89 16 11 O -0.95 -19.91 13.28 -57.54 -0.76 -20.67 16 12 C -0.58 -11.34 6.15 37.15 0.23 -11.11 16 13 C 0.01 0.20 1.12 -155.66 -0.17 0.03 16 14 C -0.54 -14.84 7.54 -34.44 -0.26 -15.10 16 15 H 0.09 2.68 8.06 -52.49 -0.42 2.25 16 16 C 0.10 2.88 5.46 -17.82 -0.10 2.79 16 17 N -0.87 -26.33 13.96 55.43 0.77 -25.56 16 18 Si 0.88 21.15 24.99 -169.99 -4.25 16.90 16 19 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.26 -5.72 5.46 56.52 0.31 -5.41 16 22 C -0.17 -3.50 9.88 -26.73 -0.26 -3.76 16 23 C -0.19 -3.92 7.55 -26.73 -0.20 -4.12 16 24 C 0.49 5.66 7.63 36.00 0.27 5.93 16 25 O -0.52 -7.14 16.73 -18.75 -0.31 -7.45 16 26 O -0.51 -4.55 13.35 -39.27 -0.52 -5.08 16 27 H 0.08 1.26 7.29 -51.93 -0.38 0.88 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 1.14 5.79 -51.93 -0.30 0.84 16 30 H 0.09 1.28 7.53 -51.93 -0.39 0.89 16 31 H 0.09 0.96 6.33 -51.93 -0.33 0.63 16 32 H 0.13 1.70 8.12 -51.93 -0.42 1.28 16 33 H 0.10 0.88 6.25 -51.93 -0.32 0.55 16 34 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 35 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 36 H 0.10 1.05 5.94 -51.93 -0.31 0.74 16 37 H 0.12 2.25 6.56 -51.92 -0.34 1.91 16 38 H 0.11 1.68 7.95 -51.92 -0.41 1.26 16 39 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 40 H 0.08 1.33 8.08 -51.93 -0.42 0.91 16 41 H 0.09 1.94 8.14 -51.93 -0.42 1.51 16 42 H 0.09 2.00 7.01 -51.93 -0.36 1.64 16 43 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 44 H 0.41 1.80 9.10 45.56 0.41 2.21 16 LS Contribution 357.98 15.07 5.39 5.39 Total: -1.00 -34.90 357.98 -8.35 -43.25 By element: Atomic # 1 Polarization: 15.49 SS G_CDS: -5.62 Total: 9.87 kcal Atomic # 6 Polarization: -29.09 SS G_CDS: -1.41 Total: -30.50 kcal Atomic # 7 Polarization: -40.73 SS G_CDS: 0.49 Total: -40.24 kcal Atomic # 8 Polarization: -53.55 SS G_CDS: -2.55 Total: -56.09 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.25 Total: 16.90 kcal Atomic # 16 Polarization: 51.82 SS G_CDS: -0.41 Total: 51.41 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -34.90 -8.35 -43.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001609741815.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.777 kcal (2) G-P(sol) polarization free energy of solvation -34.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.348 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.025 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds