Wall clock time and date at job start Tue Mar 31 2020 16:10:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33628 * 125.81098 * 2 1 4 4 C 1.34220 * 110.92646 * 180.15633 * 3 2 1 5 5 C 1.50700 * 125.42613 * 179.87496 * 4 3 2 6 6 N 1.46896 * 109.47266 * 269.69226 * 5 4 3 7 7 C 1.46905 * 111.00155 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47044 * 180.02562 * 7 6 5 9 9 C 1.38297 * 119.93202 * 90.00061 * 8 7 6 10 10 C 1.38101 * 120.07230 * 180.02562 * 9 8 7 11 11 C 1.38886 * 119.92536 * 359.97438 * 10 9 8 12 12 O 1.35750 * 120.06440 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00075 * 5.53777 * 12 11 10 14 14 H 1.07993 * 120.00518 * 354.94289 * 13 12 11 15 15 C 1.38663 * 119.99751 * 174.94575 * 13 12 11 16 16 N 1.31556 * 120.00220 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99821 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47517 * 59.99414 * 17 15 13 19 19 H 1.48505 * 109.47332 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46989 * 299.99567 * 17 15 13 21 21 C 1.38874 * 119.86623 * 0.27854 * 11 10 9 22 22 C 1.38110 * 119.92772 * 359.48927 * 21 11 10 23 23 C 1.34153 * 109.14211 * 359.61221 * 4 3 2 24 24 C 1.36502 * 125.81097 * 179.73289 * 2 1 3 25 25 C 1.47237 * 127.19564 * 359.97438 * 24 2 1 26 26 O 1.21535 * 120.00445 * 0.02562 * 25 24 2 27 27 O 1.34773 * 119.99782 * 179.97438 * 25 24 2 28 28 H 1.08997 * 109.46849 * 270.26700 * 1 2 3 29 29 H 1.08994 * 109.46584 * 30.26510 * 1 2 3 30 30 H 1.08997 * 109.46902 * 150.26515 * 1 2 3 31 31 H 1.09008 * 109.46871 * 149.69330 * 5 4 3 32 32 H 1.09002 * 109.47266 * 29.69488 * 5 4 3 33 33 H 1.00900 * 111.00180 * 303.96078 * 6 5 4 34 34 H 1.09003 * 109.46647 * 59.99968 * 7 6 5 35 35 H 1.09004 * 109.46926 * 300.00194 * 7 6 5 36 36 H 1.07999 * 119.96698 * 0.02562 * 9 8 7 37 37 H 1.07992 * 120.03608 * 179.97438 * 10 9 8 38 38 H 0.96996 * 120.00178 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.03745 * 179.72497 * 21 11 10 40 40 H 1.07996 * 119.96227 * 180.23396 * 22 21 11 41 41 H 1.08006 * 127.02561 * 180.25153 * 23 4 3 42 42 H 0.96701 * 117.00074 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0837 0.0000 4 6 3.5860 0.7389 -0.0034 5 6 4.7457 1.7013 -0.0071 6 7 5.1234 2.0076 -1.3933 7 6 6.2531 2.9457 -1.4361 8 6 6.6109 3.2360 -2.8709 9 6 6.0089 4.2909 -3.5323 10 6 6.3342 4.5592 -4.8474 11 6 7.2674 3.7685 -5.5055 12 8 7.5897 4.0301 -6.7980 13 6 7.0558 5.1384 -7.3497 14 1 6.3407 5.7273 -6.7946 15 6 7.4250 5.5222 -8.6300 16 7 8.2964 4.8051 -9.3062 17 14 6.6859 7.0581 -9.3942 18 1 7.0192 8.2377 -8.5559 19 1 7.2407 7.2483 -10.7586 20 1 5.2106 6.9097 -9.4756 21 6 7.8663 2.7068 -4.8402 22 6 7.5402 2.4466 -3.5236 23 6 3.6857 -0.5989 0.0028 24 6 2.3057 -1.1070 0.0052 25 6 1.8754 -2.5150 0.0122 26 8 0.6912 -2.7886 0.0136 27 8 2.7947 -3.5005 0.0162 28 1 -0.3633 0.0048 1.0276 29 1 -0.3632 0.8876 -0.5179 30 1 -0.3633 -0.8923 -0.5097 31 1 5.5934 1.2508 0.5094 32 1 4.4566 2.6206 0.5023 33 1 5.3337 1.1641 -1.9056 34 1 7.1113 2.5043 -0.9293 35 1 5.9740 3.8736 -0.9367 36 1 5.2837 4.9055 -3.0200 37 1 5.8635 5.3828 -5.3635 38 1 8.5544 5.0734 -10.2019 39 1 8.5890 2.0875 -5.3506 40 1 8.0084 1.6234 -3.0045 41 1 4.5939 -1.1835 0.0059 42 1 2.4641 -4.4093 0.0212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610585639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:30 Heat of formation + Delta-G solvation = -79.385039 kcal Electronic energy + Delta-G solvation = -26131.139857 eV Core-core repulsion = 22043.573935 eV Total energy + Delta-G solvation = -4087.565922 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.52 seconds Orbital eigenvalues (eV) -42.97951 -40.16025 -39.10225 -37.25400 -36.42159 -35.70842 -33.44553 -32.64715 -32.18094 -30.25077 -30.09412 -27.98484 -25.83120 -25.20216 -24.15324 -23.22285 -21.98197 -21.92004 -20.50850 -19.77221 -18.42711 -17.99689 -17.42438 -16.92184 -16.85533 -15.93222 -15.74761 -15.65254 -14.91951 -14.74874 -14.53687 -14.44855 -14.09769 -13.75984 -13.56478 -13.49708 -13.30788 -13.30513 -13.19742 -12.72629 -12.64105 -12.55143 -11.91937 -11.88485 -11.79239 -11.57108 -11.26291 -10.95783 -10.80544 -10.75549 -10.60051 -10.45213 -10.19111 -9.34723 -8.94820 -8.81813 -8.51028 -8.18489 -7.20870 -6.46235 -4.05006 0.80968 1.57798 2.20446 2.24698 2.31978 2.72358 2.80417 3.12989 3.13736 3.16662 3.95994 3.99298 4.24350 4.38587 4.66318 4.75605 4.82556 4.97449 5.07905 5.09780 5.10299 5.21922 5.23836 5.31474 5.33408 5.37415 5.57476 5.70567 5.72022 5.77560 5.85414 5.96377 6.14219 6.19731 6.40995 6.67578 6.71767 6.82011 6.90402 7.06073 7.15817 7.29998 7.39468 7.43763 7.58478 7.81233 7.98826 8.99307 9.69028 10.71618 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.016678 B = 0.001926 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.415465 B =14533.487494 C =14775.187919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.100 3.900 3 O -0.158 6.158 4 C 0.003 3.997 5 C 0.134 3.866 6 N -0.683 5.683 7 C 0.120 3.880 8 C -0.189 4.189 9 C -0.047 4.047 10 C -0.236 4.236 11 C 0.157 3.843 12 O -0.177 6.177 13 C -0.392 4.392 14 H 0.092 0.908 15 C 0.039 3.961 16 N -0.863 5.863 17 Si 0.941 3.059 18 H -0.270 1.270 19 H -0.278 1.278 20 H -0.270 1.270 21 C -0.194 4.194 22 C -0.067 4.067 23 C -0.162 4.162 24 C -0.242 4.242 25 C 0.562 3.438 26 O -0.522 6.522 27 O -0.509 6.509 28 H 0.092 0.908 29 H 0.085 0.915 30 H 0.108 0.892 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.347 0.653 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.107 0.893 37 H 0.127 0.873 38 H 0.271 0.729 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.162 0.838 42 H 0.414 0.586 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.194 -10.143 21.112 25.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.046 3.954 3 O -0.053 6.053 4 C -0.046 4.046 5 C 0.005 3.995 6 N -0.316 5.316 7 C -0.008 4.008 8 C -0.190 4.190 9 C -0.066 4.066 10 C -0.255 4.255 11 C 0.102 3.898 12 O -0.080 6.080 13 C -0.468 4.468 14 H 0.109 0.891 15 C -0.165 4.165 16 N -0.497 5.497 17 Si 0.766 3.234 18 H -0.195 1.195 19 H -0.203 1.203 20 H -0.195 1.195 21 C -0.214 4.214 22 C -0.086 4.086 23 C -0.182 4.182 24 C -0.244 4.244 25 C 0.408 3.592 26 O -0.413 6.413 27 O -0.320 6.320 28 H 0.110 0.890 29 H 0.104 0.896 30 H 0.126 0.874 31 H 0.083 0.917 32 H 0.110 0.890 33 H 0.166 0.834 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.126 0.874 37 H 0.144 0.856 38 H 0.081 0.919 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.179 0.821 42 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -10.640 -9.110 20.633 24.938 hybrid contribution 0.242 -0.623 -0.206 0.700 sum -10.398 -9.733 20.427 24.902 Atomic orbital electron populations 1.20699 0.83487 1.05587 1.04623 1.22844 0.94101 0.82984 0.95495 1.83786 1.16857 1.34263 1.70410 1.22196 0.82390 0.94350 1.05675 1.20391 0.90152 0.96769 0.92143 1.60590 1.41398 1.18767 1.10813 1.20635 0.90050 0.95683 0.94405 1.19044 1.03620 1.00835 0.95523 1.20575 0.96667 0.95687 0.93656 1.21169 1.03936 1.04484 0.95937 1.19414 0.92076 0.93035 0.85225 1.83973 1.63194 1.41766 1.19062 1.21291 1.24644 1.01733 0.99175 0.89067 1.25298 0.96429 0.99140 0.95649 1.70026 1.29922 1.37914 1.11860 0.85778 0.79117 0.80144 0.78382 1.19484 1.20274 1.19468 1.20166 1.05503 1.00847 0.94849 1.20477 0.96710 0.97768 0.93640 1.22608 0.96614 0.93175 1.05817 1.20020 0.94169 0.90338 1.19879 1.19618 0.82876 0.85198 0.71548 1.90875 1.18276 1.84474 1.47658 1.84586 1.41973 1.19639 1.85828 0.88954 0.89602 0.87376 0.91708 0.88976 0.83399 0.94954 0.90812 0.87450 0.85580 0.91944 0.86596 0.87438 0.82089 0.72774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.66 9.89 36.01 0.36 -0.31 16 2 C 0.10 1.03 7.38 -34.93 -0.26 0.77 16 3 O -0.16 -1.78 10.52 7.70 0.08 -1.70 16 4 C 0.00 0.03 6.79 -35.75 -0.24 -0.22 16 5 C 0.13 1.21 6.20 -4.98 -0.03 1.18 16 6 N -0.68 -7.92 6.48 -116.33 -0.75 -8.67 16 7 C 0.12 1.45 5.81 -4.97 -0.03 1.42 16 8 C -0.19 -3.06 5.40 -104.58 -0.56 -3.62 16 9 C -0.05 -0.85 9.69 -39.61 -0.38 -1.24 16 10 C -0.24 -5.09 9.17 -39.39 -0.36 -5.46 16 11 C 0.16 3.76 6.65 -39.11 -0.26 3.50 16 12 O -0.18 -5.04 9.76 0.05 0.00 -5.04 16 13 C -0.39 -10.94 9.49 30.89 0.29 -10.65 16 14 H 0.09 2.35 5.20 -52.49 -0.27 2.08 16 15 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 16 N -0.86 -25.24 13.67 55.48 0.76 -24.48 16 17 Si 0.94 20.47 29.55 -169.99 -5.02 15.45 16 18 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 21 C -0.19 -4.03 9.99 -39.39 -0.39 -4.42 16 22 C -0.07 -1.14 9.69 -39.60 -0.38 -1.52 16 23 C -0.16 -1.62 10.93 -37.45 -0.41 -2.03 16 24 C -0.24 -2.61 6.32 -103.30 -0.65 -3.27 16 25 C 0.56 5.85 8.33 34.39 0.29 6.13 16 26 O -0.52 -6.23 15.64 -19.29 -0.30 -6.54 16 27 O -0.51 -3.97 13.34 -40.69 -0.54 -4.52 16 28 H 0.09 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 30 H 0.11 0.89 6.49 -51.93 -0.34 0.55 16 31 H 0.07 0.46 8.14 -51.92 -0.42 0.04 16 32 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.35 4.06 8.72 -39.29 -0.34 3.72 16 34 H 0.03 0.35 8.09 -51.93 -0.42 -0.07 16 35 H 0.07 0.84 8.08 -51.93 -0.42 0.43 16 36 H 0.11 1.71 8.06 -52.49 -0.42 1.28 16 37 H 0.13 2.74 5.64 -52.49 -0.30 2.44 16 38 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 39 H 0.12 2.33 8.06 -52.49 -0.42 1.91 16 40 H 0.11 1.49 8.06 -52.49 -0.42 1.07 16 41 H 0.16 1.33 8.06 -52.48 -0.42 0.90 16 42 H 0.41 1.26 9.11 45.56 0.42 1.68 16 LS Contribution 371.93 15.07 5.60 5.60 Total: -1.00 -33.63 371.93 -7.50 -41.13 By element: Atomic # 1 Polarization: 11.68 SS G_CDS: -4.19 Total: 7.49 kcal Atomic # 6 Polarization: -15.61 SS G_CDS: -3.13 Total: -18.74 kcal Atomic # 7 Polarization: -33.15 SS G_CDS: 0.01 Total: -33.15 kcal Atomic # 8 Polarization: -17.02 SS G_CDS: -0.76 Total: -17.79 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.02 Total: 15.45 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.63 -7.50 -41.13 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610585639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.255 kcal (2) G-P(sol) polarization free energy of solvation -33.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.385 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.52 seconds