Wall clock time and date at job start Tue Mar 31 2020 16:10:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 O 1.33628 * 125.81098 * 2 1 4 4 C 1.34220 * 110.92646 * 180.15633 * 3 2 1 5 5 C 1.50700 * 125.42613 * 179.87496 * 4 3 2 6 6 N 1.46896 * 109.47266 * 269.69226 * 5 4 3 7 7 C 1.46905 * 111.00155 * 179.97438 * 6 5 4 8 8 C 1.50698 * 109.47044 * 180.02562 * 7 6 5 9 9 C 1.38297 * 119.93202 * 90.00061 * 8 7 6 10 10 C 1.38101 * 120.07230 * 180.02562 * 9 8 7 11 11 C 1.38886 * 119.92536 * 359.97438 * 10 9 8 12 12 O 1.35750 * 120.06440 * 180.02562 * 11 10 9 13 13 C 1.34828 * 117.00075 * 5.53777 * 12 11 10 14 14 H 1.07993 * 120.00518 * 354.94289 * 13 12 11 15 15 C 1.38663 * 119.99751 * 174.94575 * 13 12 11 16 16 N 1.31556 * 120.00220 * 359.97438 * 15 13 12 17 17 Si 1.86795 * 119.99821 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47517 * 59.99414 * 17 15 13 19 19 H 1.48505 * 109.47332 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46989 * 299.99567 * 17 15 13 21 21 C 1.38874 * 119.86623 * 0.27854 * 11 10 9 22 22 C 1.38110 * 119.92772 * 359.48927 * 21 11 10 23 23 C 1.34153 * 109.14211 * 359.61221 * 4 3 2 24 24 C 1.36502 * 125.81097 * 179.73289 * 2 1 3 25 25 C 1.47237 * 127.19564 * 359.97438 * 24 2 1 26 26 O 1.21535 * 120.00445 * 0.02562 * 25 24 2 27 27 O 1.34773 * 119.99782 * 179.97438 * 25 24 2 28 28 H 1.08997 * 109.46849 * 270.26700 * 1 2 3 29 29 H 1.08994 * 109.46584 * 30.26510 * 1 2 3 30 30 H 1.08997 * 109.46902 * 150.26515 * 1 2 3 31 31 H 1.09008 * 109.46871 * 149.69330 * 5 4 3 32 32 H 1.09002 * 109.47266 * 29.69488 * 5 4 3 33 33 H 1.00900 * 111.00180 * 303.96078 * 6 5 4 34 34 H 1.09003 * 109.46647 * 59.99968 * 7 6 5 35 35 H 1.09004 * 109.46926 * 300.00194 * 7 6 5 36 36 H 1.07999 * 119.96698 * 0.02562 * 9 8 7 37 37 H 1.07992 * 120.03608 * 179.97438 * 10 9 8 38 38 H 0.96996 * 120.00178 * 179.97438 * 16 15 13 39 39 H 1.07996 * 120.03745 * 179.72497 * 21 11 10 40 40 H 1.07996 * 119.96227 * 180.23396 * 22 21 11 41 41 H 1.08006 * 127.02561 * 180.25153 * 23 4 3 42 42 H 0.96701 * 117.00074 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.2889 1.0837 0.0000 4 6 3.5860 0.7389 -0.0034 5 6 4.7457 1.7013 -0.0071 6 7 5.1234 2.0076 -1.3933 7 6 6.2531 2.9457 -1.4361 8 6 6.6109 3.2360 -2.8709 9 6 6.0089 4.2909 -3.5323 10 6 6.3342 4.5592 -4.8474 11 6 7.2674 3.7685 -5.5055 12 8 7.5897 4.0301 -6.7980 13 6 7.0558 5.1384 -7.3497 14 1 6.3407 5.7273 -6.7946 15 6 7.4250 5.5222 -8.6300 16 7 8.2964 4.8051 -9.3062 17 14 6.6859 7.0581 -9.3942 18 1 7.0192 8.2377 -8.5559 19 1 7.2407 7.2483 -10.7586 20 1 5.2106 6.9097 -9.4756 21 6 7.8663 2.7068 -4.8402 22 6 7.5402 2.4466 -3.5236 23 6 3.6857 -0.5989 0.0028 24 6 2.3057 -1.1070 0.0052 25 6 1.8754 -2.5150 0.0122 26 8 0.6912 -2.7886 0.0136 27 8 2.7947 -3.5005 0.0162 28 1 -0.3633 0.0048 1.0276 29 1 -0.3632 0.8876 -0.5179 30 1 -0.3633 -0.8923 -0.5097 31 1 5.5934 1.2508 0.5094 32 1 4.4566 2.6206 0.5023 33 1 5.3337 1.1641 -1.9056 34 1 7.1113 2.5043 -0.9293 35 1 5.9740 3.8736 -0.9367 36 1 5.2837 4.9055 -3.0200 37 1 5.8635 5.3828 -5.3635 38 1 8.5544 5.0734 -10.2019 39 1 8.5890 2.0875 -5.3506 40 1 8.0084 1.6234 -3.0045 41 1 4.5939 -1.1835 0.0059 42 1 2.4641 -4.4093 0.0212 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610585639.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:10:27 Heat of formation + Delta-G solvation = -102.979190 kcal Electronic energy + Delta-G solvation = -26132.162976 eV Core-core repulsion = 22043.573935 eV Total energy + Delta-G solvation = -4088.589041 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -43.72730 -40.90325 -40.76729 -38.70956 -37.14621 -36.83913 -34.33728 -34.18875 -33.29764 -31.77046 -31.31093 -28.96565 -27.48860 -26.32519 -25.12391 -24.10044 -23.58642 -22.65730 -21.98678 -20.52168 -19.82037 -19.16703 -18.82370 -18.14902 -17.62755 -16.74110 -16.64501 -16.44690 -16.42512 -16.12795 -15.81469 -15.61713 -15.37717 -15.17113 -14.92146 -14.50105 -14.30563 -14.24020 -14.00658 -13.91723 -13.85268 -13.57163 -13.25733 -12.97884 -12.84103 -12.62060 -12.53246 -12.34164 -12.30694 -12.14560 -12.03120 -11.73266 -11.15847 -10.96342 -10.78369 -9.74927 -9.68175 -9.31647 -8.88794 -8.46678 -6.14691 0.05094 0.63262 0.65661 0.89963 1.34941 1.45633 1.51129 1.59249 1.96148 2.16094 2.18346 2.80682 3.12568 3.33723 3.53937 3.58709 3.68727 4.04499 4.06137 4.11082 4.19628 4.24698 4.36084 4.47386 4.55696 4.57063 4.58774 4.63586 4.69005 4.76316 4.86499 4.91239 5.10421 5.12552 5.17457 5.27135 5.33373 5.53991 5.59031 5.74405 5.83696 5.97278 6.01568 6.04225 6.27456 6.40506 6.96113 6.98093 7.79511 8.76364 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.016678 B = 0.001926 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1678.415465 B =14533.487494 C =14775.187919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.094 3.906 3 O -0.171 6.171 4 C -0.009 4.009 5 C 0.140 3.860 6 N -0.698 5.698 7 C 0.124 3.876 8 C -0.159 4.159 9 C -0.050 4.050 10 C -0.247 4.247 11 C 0.112 3.888 12 O -0.234 6.234 13 C -0.414 4.414 14 H 0.100 0.900 15 C -0.024 4.024 16 N -0.921 5.921 17 Si 1.018 2.982 18 H -0.257 1.257 19 H -0.271 1.271 20 H -0.258 1.258 21 C -0.207 4.207 22 C -0.057 4.057 23 C -0.161 4.161 24 C -0.265 4.265 25 C 0.563 3.437 26 O -0.544 6.544 27 O -0.505 6.505 28 H 0.108 0.892 29 H 0.098 0.902 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.100 0.900 33 H 0.346 0.654 34 H 0.061 0.939 35 H 0.088 0.912 36 H 0.135 0.865 37 H 0.115 0.885 38 H 0.273 0.727 39 H 0.112 0.888 40 H 0.151 0.849 41 H 0.178 0.822 42 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.052 -10.195 24.379 28.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.040 3.960 3 O -0.067 6.067 4 C -0.057 4.057 5 C 0.012 3.988 6 N -0.331 5.331 7 C -0.003 4.003 8 C -0.160 4.160 9 C -0.069 4.069 10 C -0.266 4.266 11 C 0.062 3.938 12 O -0.140 6.140 13 C -0.490 4.490 14 H 0.118 0.882 15 C -0.221 4.221 16 N -0.559 5.559 17 Si 0.837 3.163 18 H -0.181 1.181 19 H -0.196 1.196 20 H -0.183 1.183 21 C -0.226 4.226 22 C -0.076 4.076 23 C -0.181 4.181 24 C -0.268 4.268 25 C 0.410 3.590 26 O -0.437 6.437 27 O -0.319 6.319 28 H 0.126 0.874 29 H 0.117 0.883 30 H 0.118 0.882 31 H 0.111 0.889 32 H 0.118 0.882 33 H 0.165 0.835 34 H 0.079 0.921 35 H 0.107 0.893 36 H 0.153 0.847 37 H 0.133 0.867 38 H 0.081 0.919 39 H 0.130 0.870 40 H 0.168 0.832 41 H 0.195 0.805 42 H 0.295 0.705 Dipole moment (debyes) X Y Z Total from point charges -11.506 -9.200 23.973 28.138 hybrid contribution 0.457 -0.830 -0.826 1.257 sum -11.049 -10.030 23.147 27.540 Atomic orbital electron populations 1.20778 0.82043 1.05735 1.05682 1.23322 0.95090 0.82833 0.94759 1.83782 1.17489 1.34760 1.70682 1.22507 0.82402 0.94812 1.06005 1.20472 0.90407 0.97214 0.90744 1.60461 1.41049 1.18883 1.12736 1.20636 0.91545 0.97025 0.91107 1.19630 1.00666 0.98261 0.97475 1.20934 0.97066 0.96646 0.92244 1.21263 1.03713 1.04111 0.97539 1.19995 0.93995 0.95063 0.84760 1.83935 1.65597 1.42963 1.21529 1.21768 1.25097 1.02211 0.99905 0.88237 1.26590 0.96871 1.02768 0.95882 1.70174 1.32627 1.40597 1.12523 0.84659 0.78550 0.75629 0.77452 1.18124 1.19583 1.18260 1.20463 1.05533 1.00093 0.96550 1.20934 0.96174 0.98526 0.91928 1.22840 0.96790 0.93306 1.05150 1.20302 0.94980 0.90799 1.20714 1.19623 0.82745 0.85574 0.71072 1.90863 1.19145 1.84864 1.48877 1.84539 1.41404 1.20727 1.85205 0.87381 0.88341 0.88204 0.88923 0.88161 0.83501 0.92124 0.89349 0.84674 0.86740 0.91850 0.87034 0.83151 0.80506 0.70484 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.20 9.89 71.24 0.70 -0.50 16 2 C 0.09 1.81 7.38 25.28 0.19 2.00 16 3 O -0.17 -3.52 10.52 4.65 0.05 -3.47 16 4 C -0.01 -0.16 6.79 24.75 0.17 0.01 16 5 C 0.14 1.90 6.20 85.56 0.53 2.43 16 6 N -0.70 -13.05 6.48 -521.96 -3.38 -16.43 16 7 C 0.12 2.34 5.81 85.56 0.50 2.84 16 8 C -0.16 -4.56 5.40 -19.84 -0.11 -4.67 16 9 C -0.05 -1.71 9.69 22.25 0.22 -1.49 16 10 C -0.25 -10.81 9.17 22.39 0.21 -10.61 16 11 C 0.11 5.61 6.65 22.58 0.15 5.76 16 12 O -0.23 -14.21 9.76 -22.72 -0.22 -14.43 16 13 C -0.41 -24.38 9.49 67.92 0.64 -23.74 16 14 H 0.10 5.40 5.20 -2.91 -0.02 5.38 16 15 C -0.02 -1.36 5.49 84.84 0.47 -0.90 16 16 N -0.92 -57.00 13.67 21.62 0.30 -56.70 16 17 Si 1.02 43.24 29.55 68.60 2.03 45.26 16 18 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 19 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 20 H -0.26 -10.34 7.11 99.48 0.71 -9.63 16 21 C -0.21 -8.64 9.99 22.39 0.22 -8.42 16 22 C -0.06 -1.78 9.69 22.25 0.22 -1.56 16 23 C -0.16 -2.81 10.93 23.65 0.26 -2.55 16 24 C -0.27 -5.34 6.32 -19.01 -0.12 -5.46 16 25 C 0.56 11.03 8.33 70.19 0.58 11.61 16 26 O -0.54 -12.60 15.64 19.72 0.31 -12.29 16 27 O -0.51 -6.95 13.34 -56.84 -0.76 -7.71 16 28 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 29 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.10 1.58 6.49 -2.39 -0.02 1.57 16 31 H 0.09 0.80 8.14 -2.38 -0.02 0.78 16 32 H 0.10 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.35 6.64 8.72 -89.69 -0.78 5.85 16 34 H 0.06 0.88 8.09 -2.39 -0.02 0.86 16 35 H 0.09 1.51 8.08 -2.39 -0.02 1.49 16 36 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 37 H 0.11 5.16 5.64 -2.91 -0.02 5.14 16 38 H 0.27 15.46 8.31 -92.71 -0.77 14.69 16 39 H 0.11 4.63 8.06 -2.91 -0.02 4.61 16 40 H 0.15 3.41 8.06 -2.91 -0.02 3.38 16 41 H 0.18 2.35 8.06 -2.91 -0.02 2.33 16 42 H 0.43 1.83 9.11 -74.06 -0.67 1.15 16 Total: -1.00 -78.86 371.93 2.78 -76.08 By element: Atomic # 1 Polarization: 25.30 SS G_CDS: -0.36 Total: 24.93 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 4.82 Total: -35.25 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -3.09 Total: -73.13 kcal Atomic # 8 Polarization: -37.28 SS G_CDS: -0.62 Total: -37.90 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.26 kcal Total: -78.86 2.78 -76.08 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610585639.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.898 kcal (2) G-P(sol) polarization free energy of solvation -78.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds