Wall clock time and date at job start Tue Mar 31 2020 18:02:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08996 * 109.47598 * 2 1 4 4 O 1.42896 * 109.47108 * 120.00504 * 2 1 3 5 5 C 1.35765 * 116.99810 * 274.90879 * 4 2 1 6 6 C 1.38969 * 119.90188 * 4.96204 * 5 4 2 7 7 C 1.37735 * 120.09040 * 179.71899 * 6 5 4 8 8 C 1.39750 * 119.90572 * 0.55367 * 7 6 5 9 9 C 1.43205 * 120.09607 * 179.70257 * 8 7 6 10 10 N 7.45473 * 97.77686 * 66.40555 * 2 1 3 11 11 C 1.39760 * 119.81092 * 359.71366 * 8 7 6 12 12 C 1.37733 * 119.90519 * 0.02562 * 11 8 7 13 13 C 1.50697 * 109.46977 * 239.99857 * 2 1 3 14 14 O 1.20828 * 120.00147 * 245.00448 * 13 2 1 15 15 O 1.34234 * 119.99990 * 65.00006 * 13 2 1 16 16 C 1.45201 * 117.00189 * 179.97438 * 15 13 2 17 17 C 1.52998 * 109.47092 * 180.02562 * 16 15 13 18 18 C 1.50700 * 112.99783 * 53.84495 * 17 16 15 19 19 H 1.08006 * 119.99479 * 243.33407 * 18 17 16 20 20 C 1.37869 * 120.00678 * 63.33411 * 18 17 16 21 21 N 1.31522 * 119.99750 * 6.28927 * 20 18 17 22 22 Si 1.86795 * 120.00292 * 186.29056 * 20 18 17 23 23 H 1.48497 * 109.47130 * 59.99985 * 22 20 18 24 24 H 1.48502 * 109.46999 * 180.02562 * 22 20 18 25 25 H 1.48505 * 109.47170 * 299.99747 * 22 20 18 26 26 C 1.54038 * 113.81707 * 281.85273 * 17 16 15 27 27 O 1.44173 * 85.51669 * 223.19661 * 26 17 16 28 28 C 1.44175 * 93.34215 * 24.19424 * 27 26 17 29 29 H 1.09000 * 109.46758 * 59.99988 * 1 2 3 30 30 H 1.08994 * 109.47170 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.47028 * 300.00148 * 1 2 3 32 32 H 1.07998 * 119.95031 * 359.97438 * 6 5 4 33 33 H 1.08002 * 120.04657 * 180.24536 * 7 6 5 34 34 H 1.08004 * 120.04184 * 180.02562 * 11 8 7 35 35 H 1.07996 * 119.95177 * 179.97438 * 12 11 8 36 36 H 1.09001 * 109.46852 * 300.00410 * 16 15 13 37 37 H 1.09000 * 109.47112 * 60.00129 * 16 15 13 38 38 H 0.96995 * 120.00210 * 180.02562 * 21 20 18 39 39 H 1.08994 * 113.86064 * 337.34522 * 26 17 16 40 40 H 1.08998 * 113.85958 * 109.05165 * 26 17 16 41 41 H 1.09000 * 113.86716 * 221.65995 * 28 27 26 42 42 H 1.09001 * 113.98664 * 89.96741 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8935 1.0276 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1142 0.0622 2.3025 6 6 1.6709 1.3792 2.3194 7 6 1.7732 2.1275 3.4712 8 6 2.3342 1.5642 4.6205 9 6 2.4483 2.3405 5.8185 10 7 2.5388 2.9564 6.7687 11 6 2.7838 0.2411 4.5975 12 6 2.6728 -0.5018 3.4430 13 6 2.0323 -0.7104 -1.2304 14 8 2.6506 -1.7429 -1.1219 15 8 1.7928 -0.1963 -2.4471 16 6 2.3069 -0.9338 -3.5873 17 6 1.9389 -0.1991 -4.8779 18 6 2.3774 1.2427 -4.8801 19 1 1.6408 2.0310 -4.9295 20 6 3.7188 1.5555 -4.8191 21 7 4.6204 0.6001 -4.8838 22 14 4.2557 3.3361 -4.6446 23 1 3.6983 3.9004 -3.3892 24 1 5.7386 3.4041 -4.6030 25 1 3.7571 4.1193 -5.8036 26 6 0.4776 -0.4084 -5.3178 27 8 1.0186 -0.5670 -6.6448 28 6 2.3163 -0.9660 -6.1594 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.2419 1.8151 1.4293 33 1 1.4248 3.1497 3.4847 34 1 3.2176 -0.1981 5.4837 35 1 3.0204 -1.5242 3.4242 36 1 3.3914 -1.0118 -3.5105 37 1 1.8708 -1.9327 -3.6005 38 1 5.5641 0.8201 -4.8405 39 1 0.0217 -1.3134 -4.9164 40 1 -0.1492 0.4754 -5.1999 41 1 3.1476 -0.5244 -6.7089 42 1 2.4239 -2.0409 -6.0145 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001646888806.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:02:25 Heat of formation + Delta-G solvation = -72.032169 kcal Electronic energy + Delta-G solvation = -27595.215600 eV Core-core repulsion = 23507.968523 eV Total energy + Delta-G solvation = -4087.247077 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -40.94629 -39.87761 -39.16772 -38.18065 -36.41163 -35.74865 -33.06409 -32.57750 -31.37469 -30.51423 -29.94167 -25.86730 -25.45674 -25.05471 -24.31530 -23.51079 -23.06987 -20.44952 -19.29861 -19.10490 -18.49442 -17.30447 -16.79386 -16.25403 -16.08072 -15.61017 -15.38330 -15.01901 -14.87722 -14.57088 -14.46814 -14.34738 -14.18223 -14.15080 -13.92290 -13.51311 -13.19653 -13.00423 -12.58052 -12.50262 -12.40519 -12.30718 -12.02909 -11.90726 -11.66148 -11.29970 -11.12909 -11.03951 -10.88414 -10.56263 -10.20856 -10.05118 -9.65456 -9.52431 -9.50801 -9.16553 -8.83063 -8.59574 -8.39166 -6.25972 -4.29432 0.48992 0.90750 2.27039 2.40947 2.53276 2.65354 3.20682 3.26918 3.28337 3.49117 3.53307 3.64688 4.25806 4.31614 4.44468 4.56844 4.69015 4.77007 4.80228 4.92621 5.04270 5.08798 5.16813 5.40821 5.42917 5.54547 5.67703 5.79908 5.86785 5.89635 5.94410 5.94839 6.09524 6.18817 6.21207 6.28279 6.44340 6.84599 6.96259 7.00501 7.18760 7.19751 7.23217 7.27372 7.70288 8.07030 8.25661 8.67764 9.34815 10.82333 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.015078 B = 0.002878 C = 0.002611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.597301 B = 9725.542623 C =10719.595781 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.090 3.910 3 H 0.114 0.886 4 O -0.282 6.282 5 C 0.169 3.831 6 C -0.215 4.215 7 C -0.024 4.024 8 C -0.078 4.078 9 C 0.262 3.738 10 N -0.429 5.429 11 C -0.028 4.028 12 C -0.151 4.151 13 C 0.457 3.543 14 O -0.500 6.500 15 O -0.322 6.322 16 C 0.083 3.917 17 C 0.034 3.966 18 C -0.489 4.489 19 H 0.066 0.934 20 C 0.067 3.933 21 N -0.888 5.888 22 Si 0.898 3.102 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.275 1.275 26 C 0.028 3.972 27 O -0.387 6.387 28 C 0.050 3.950 29 H 0.095 0.905 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.145 0.855 33 H 0.137 0.863 34 H 0.140 0.860 35 H 0.145 0.855 36 H 0.090 0.910 37 H 0.040 0.960 38 H 0.266 0.734 39 H 0.054 0.946 40 H 0.079 0.921 41 H 0.098 0.902 42 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.518 -1.200 13.505 15.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.032 3.968 3 H 0.131 0.869 4 O -0.194 6.194 5 C 0.122 3.878 6 C -0.234 4.234 7 C -0.045 4.045 8 C -0.082 4.082 9 C -0.053 4.053 10 N -0.105 5.105 11 C -0.049 4.049 12 C -0.170 4.170 13 C 0.298 3.702 14 O -0.388 6.388 15 O -0.237 6.237 16 C 0.010 3.990 17 C 0.033 3.967 18 C -0.526 4.526 19 H 0.084 0.916 20 C -0.136 4.136 21 N -0.525 5.525 22 Si 0.725 3.275 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.200 1.200 26 C -0.049 4.049 27 O -0.306 6.306 28 C -0.027 4.027 29 H 0.113 0.887 30 H 0.093 0.907 31 H 0.095 0.905 32 H 0.163 0.837 33 H 0.155 0.845 34 H 0.158 0.842 35 H 0.162 0.838 36 H 0.108 0.892 37 H 0.058 0.942 38 H 0.076 0.924 39 H 0.072 0.928 40 H 0.097 0.903 41 H 0.116 0.884 42 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -6.042 -0.762 14.630 15.847 hybrid contribution 0.554 0.644 -0.207 0.874 sum -5.488 -0.119 14.423 15.432 Atomic orbital electron populations 1.22324 0.91405 1.04621 1.04754 1.21790 0.96298 0.96999 0.81688 0.86862 1.86164 1.80114 1.37219 1.15896 1.19364 0.91980 0.89948 0.86531 1.21348 1.07622 0.94105 1.00326 1.20953 0.93679 0.99559 0.90266 1.15915 1.09627 0.93606 0.89059 1.25653 0.93390 0.93360 0.92873 1.81260 1.09360 1.08898 1.10944 1.20958 0.94848 0.91368 0.97701 1.20390 1.04015 1.02038 0.90507 1.22714 0.77861 0.83883 0.85786 1.90659 1.37192 1.23456 1.87469 1.86502 1.70988 1.52608 1.13629 1.23563 1.00835 0.91841 0.82772 1.21123 0.89987 0.97133 0.88458 1.20508 0.91976 0.89119 1.50985 0.91560 1.24959 0.96478 0.97796 0.94339 1.69867 1.01383 1.32286 1.48976 0.86550 0.77448 0.84548 0.78935 1.20032 1.21201 1.19999 1.24104 0.98322 0.98965 0.83507 1.89502 1.26825 1.88602 1.25681 1.23932 0.86525 0.96244 0.96031 0.88665 0.90683 0.90460 0.83717 0.84536 0.84241 0.83759 0.89208 0.94222 0.92393 0.92810 0.90322 0.88375 0.93378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.68 9.15 37.16 0.34 -1.34 16 2 C 0.09 1.15 2.74 -27.88 -0.08 1.07 16 3 H 0.11 1.26 6.26 -51.93 -0.33 0.93 16 4 O -0.28 -3.66 9.33 -38.91 -0.36 -4.03 16 5 C 0.17 1.73 6.61 -39.04 -0.26 1.47 16 6 C -0.22 -1.82 8.23 -39.49 -0.33 -2.14 16 7 C -0.02 -0.18 9.75 -39.20 -0.38 -0.56 16 8 C -0.08 -0.64 5.74 -106.84 -0.61 -1.25 16 9 C 0.26 2.58 15.33 -22.47 -0.34 2.24 16 10 N -0.43 -5.24 18.54 41.84 0.78 -4.47 16 11 C -0.03 -0.21 9.75 -39.20 -0.38 -0.59 16 12 C -0.15 -1.30 9.97 -39.50 -0.39 -1.70 16 13 C 0.46 8.16 7.29 36.00 0.26 8.43 16 14 O -0.50 -10.44 16.26 -25.47 -0.41 -10.85 16 15 O -0.32 -6.37 9.83 -39.27 -0.39 -6.76 16 16 C 0.08 1.80 4.63 37.16 0.17 1.97 16 17 C 0.03 0.76 0.62 -154.58 -0.10 0.66 16 18 C -0.49 -12.14 7.93 -34.44 -0.27 -12.41 16 19 H 0.07 1.65 7.82 -52.48 -0.41 1.24 16 20 C 0.07 1.69 5.26 -17.82 -0.09 1.60 16 21 N -0.89 -23.03 11.34 55.43 0.63 -22.40 16 22 Si 0.90 19.80 29.54 -169.99 -5.02 14.78 16 23 H -0.27 -5.93 7.11 56.52 0.40 -5.53 16 24 H -0.29 -6.35 7.11 56.52 0.40 -5.95 16 25 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 26 C 0.03 0.56 8.35 37.61 0.31 0.88 16 27 O -0.39 -8.74 12.40 -35.23 -0.44 -9.18 16 28 C 0.05 1.11 7.94 37.61 0.30 1.41 16 29 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 30 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 31 H 0.08 0.56 6.95 -51.93 -0.36 0.20 16 32 H 0.15 1.04 5.42 -52.49 -0.28 0.75 16 33 H 0.14 0.77 8.06 -52.49 -0.42 0.35 16 34 H 0.14 0.72 8.06 -52.48 -0.42 0.30 16 35 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 36 H 0.09 2.19 7.03 -51.93 -0.37 1.83 16 37 H 0.04 0.80 8.05 -51.93 -0.42 0.38 16 38 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 39 H 0.05 0.95 8.04 -51.93 -0.42 0.54 16 40 H 0.08 1.50 8.09 -51.93 -0.42 1.08 16 41 H 0.10 2.37 7.56 -51.93 -0.39 1.98 16 42 H 0.05 0.98 8.10 -51.93 -0.42 0.56 16 LS Contribution 369.92 15.07 5.57 5.57 Total: -1.00 -30.20 369.92 -6.56 -36.75 By element: Atomic # 1 Polarization: 5.91 SS G_CDS: -5.06 Total: 0.84 kcal Atomic # 6 Polarization: 1.58 SS G_CDS: -1.85 Total: -0.27 kcal Atomic # 7 Polarization: -28.28 SS G_CDS: 1.40 Total: -26.87 kcal Atomic # 8 Polarization: -29.21 SS G_CDS: -1.60 Total: -30.81 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.20 -6.56 -36.75 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001646888806.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.278 kcal (2) G-P(sol) polarization free energy of solvation -30.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.754 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.032 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds