Wall clock time and date at job start Tue Mar 31 2020 16:33:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52996 * 109.46654 * 2 1 4 4 N 1.46500 * 109.47042 * 240.00326 * 2 1 3 5 5 C 1.34783 * 120.00137 * 59.99625 * 4 2 1 6 6 O 1.21551 * 119.99666 * 359.97438 * 5 4 2 7 7 C 1.47874 * 119.99984 * 179.97438 * 5 4 2 8 8 C 1.39925 * 120.02976 * 359.72803 * 7 5 4 9 9 C 1.38326 * 120.35934 * 179.74203 * 8 7 5 10 10 C 1.37745 * 120.41509 * 0.55328 * 9 8 7 11 11 C 1.40754 * 120.03715 * 359.70666 * 10 9 8 12 12 C 1.41444 * 120.17683 * 180.02562 * 11 10 9 13 13 H 1.08000 * 119.99940 * 150.12131 * 12 11 10 14 14 C 1.39936 * 119.99931 * 330.12202 * 12 11 10 15 15 N 1.30827 * 119.99999 * 164.70431 * 14 12 11 16 16 Si 1.86800 * 119.99915 * 344.70454 * 14 12 11 17 17 H 1.48497 * 109.47229 * 90.28628 * 16 14 12 18 18 H 1.48504 * 109.47141 * 210.28697 * 16 14 12 19 19 H 1.48502 * 109.47162 * 330.28691 * 16 14 12 20 20 C 1.39000 * 120.02367 * 179.97438 * 7 5 4 21 21 C 1.52995 * 109.47426 * 119.99955 * 2 1 3 22 22 H 1.09001 * 109.46678 * 65.02529 * 21 2 1 23 23 O 1.42898 * 109.47146 * 305.02659 * 21 2 1 24 24 C 1.52995 * 109.47361 * 185.02311 * 21 2 1 25 25 F 1.39911 * 109.47126 * 63.17909 * 24 21 2 26 26 F 1.39892 * 109.47591 * 183.17764 * 24 21 2 27 27 F 1.39902 * 109.47074 * 303.18173 * 24 21 2 28 28 H 1.09003 * 109.47555 * 59.99968 * 1 2 3 29 29 H 1.09004 * 109.47259 * 299.99480 * 1 2 3 30 30 H 1.09008 * 109.47050 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47474 * 68.50674 * 3 2 1 32 32 H 1.09005 * 109.47312 * 188.50358 * 3 2 1 33 33 H 1.08999 * 109.47721 * 308.50066 * 3 2 1 34 34 H 0.96996 * 119.99789 * 239.99360 * 4 2 1 35 35 H 1.08000 * 119.81498 * 359.97438 * 8 7 5 36 36 H 1.08006 * 119.78870 * 180.27858 * 9 8 7 37 37 H 1.08002 * 119.98558 * 179.72036 * 10 9 8 38 38 H 0.96998 * 119.99499 * 179.97438 * 15 14 12 39 39 H 1.07993 * 120.20034 * 359.95978 * 20 7 5 40 40 H 0.96696 * 114.00349 * 299.99832 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 2.0183 -0.6905 -1.1962 5 6 1.6926 -0.2301 -2.4204 6 8 0.9934 0.7579 -2.5318 7 6 2.1860 -0.9268 -3.6278 8 6 2.9957 -2.0608 -3.5002 9 6 3.4566 -2.7209 -4.6250 10 6 3.1336 -2.2634 -5.8834 11 6 2.3247 -1.1211 -6.0317 12 6 1.9907 -0.6490 -7.3225 13 1 1.0552 -0.1341 -7.4839 14 6 2.8725 -0.8492 -8.3905 15 7 2.4562 -0.6920 -9.6208 16 14 4.6440 -1.3409 -8.0595 17 1 4.7490 -2.8218 -8.0275 18 1 5.5156 -0.8060 -9.1363 19 1 5.0757 -0.7856 -6.7516 20 6 1.8500 -0.4526 -4.8905 21 6 2.0401 -0.7212 1.2492 22 1 1.7521 -1.7716 1.2053 23 8 1.4698 -0.1192 2.4130 24 6 3.5648 -0.6127 1.3139 25 9 3.9317 0.7312 1.4432 26 9 4.0372 -1.3331 2.4161 27 9 4.1198 -1.1369 0.1415 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 0.5138 0.8901 30 1 -0.3633 -1.0277 0.0005 31 1 1.8060 1.9106 0.9562 32 1 3.1193 1.4464 -0.1520 33 1 1.5578 1.9984 -0.8042 34 1 2.5760 -1.4791 -1.1072 35 1 3.2591 -2.4248 -2.5180 36 1 4.0773 -3.5980 -4.5157 37 1 3.5010 -2.7816 -6.7569 38 1 3.0676 -0.8304 -10.3610 39 1 1.2281 0.4242 -4.9937 40 1 1.6850 0.8178 2.5167 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647604238.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:22 Heat of formation + Delta-G solvation = -231.484177 kcal Electronic energy + Delta-G solvation = -29537.090715 eV Core-core repulsion = 24901.072539 eV Total energy + Delta-G solvation = -4636.018176 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -51.30570 -48.81023 -48.73660 -41.50728 -39.71402 -38.75080 -36.22915 -35.58954 -33.33948 -32.01402 -31.35904 -30.09743 -28.42942 -27.12376 -25.35668 -24.51975 -22.57235 -22.13208 -20.95542 -20.10769 -19.73383 -19.45446 -19.30983 -18.34796 -17.73492 -17.26698 -16.50214 -16.41032 -16.05770 -15.94292 -15.74947 -15.52332 -15.43916 -15.22258 -15.08524 -14.95588 -14.86860 -14.57618 -14.51064 -14.32791 -14.25408 -13.86329 -13.44968 -13.35881 -13.11586 -12.94402 -12.81644 -12.65609 -12.53091 -12.31047 -12.10811 -11.73505 -11.62289 -11.51736 -11.11170 -10.63376 -10.27145 -9.63758 -9.57972 -8.91149 -6.56741 0.17112 0.73683 1.24614 1.40677 1.47100 1.50809 1.91434 1.95343 2.11452 2.53166 2.58980 2.66068 2.83099 3.20085 3.42586 3.45148 3.68494 3.84233 3.98315 4.21498 4.24957 4.38768 4.52321 4.58808 4.71443 4.77037 4.83308 4.87717 4.90892 5.14616 5.23868 5.31007 5.41421 5.43556 5.63408 5.70985 5.83882 6.08703 6.21395 6.29054 6.50587 6.64577 6.73811 7.21407 8.17945 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.022114 B = 0.003301 C = 0.003066 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.880887 B = 8480.267138 C = 9130.256791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.142 3.858 3 C -0.182 4.182 4 N -0.712 5.712 5 C 0.572 3.428 6 O -0.563 6.563 7 C -0.114 4.114 8 C -0.184 4.184 9 C -0.082 4.082 10 C -0.230 4.230 11 C 0.066 3.934 12 C -0.487 4.487 13 H 0.051 0.949 14 C 0.044 3.956 15 N -0.852 5.852 16 Si 0.970 3.030 17 H -0.246 1.246 18 H -0.279 1.279 19 H -0.254 1.254 20 C -0.163 4.163 21 C 0.089 3.911 22 H 0.167 0.833 23 O -0.517 6.517 24 C 0.418 3.582 25 F -0.178 7.178 26 F -0.178 7.178 27 F -0.180 7.180 28 H 0.056 0.944 29 H 0.093 0.907 30 H 0.066 0.934 31 H 0.097 0.903 32 H 0.065 0.935 33 H 0.060 0.940 34 H 0.411 0.589 35 H 0.144 0.856 36 H 0.145 0.855 37 H 0.108 0.892 38 H 0.295 0.705 39 H 0.092 0.908 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.831 -2.869 24.384 24.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.056 3.944 3 C -0.240 4.240 4 N -0.370 5.370 5 C 0.361 3.639 6 O -0.443 6.443 7 C -0.117 4.117 8 C -0.203 4.203 9 C -0.100 4.100 10 C -0.250 4.250 11 C 0.063 3.937 12 C -0.516 4.516 13 H 0.069 0.931 14 C -0.170 4.170 15 N -0.478 5.478 16 Si 0.793 3.207 17 H -0.171 1.171 18 H -0.206 1.206 19 H -0.178 1.178 20 C -0.183 4.183 21 C 0.026 3.974 22 H 0.185 0.815 23 O -0.325 6.325 24 C 0.364 3.636 25 F -0.160 7.160 26 F -0.159 7.159 27 F -0.161 7.161 28 H 0.075 0.925 29 H 0.112 0.888 30 H 0.085 0.915 31 H 0.115 0.885 32 H 0.084 0.916 33 H 0.079 0.921 34 H 0.252 0.748 35 H 0.161 0.839 36 H 0.163 0.837 37 H 0.126 0.874 38 H 0.105 0.895 39 H 0.111 0.889 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 3.120 -2.713 24.161 24.512 hybrid contribution 1.003 0.497 -0.983 1.489 sum 4.123 -2.216 23.178 23.646 Atomic orbital electron populations 1.22075 0.91620 1.03402 1.03838 1.21045 0.96872 0.93285 0.83205 1.22634 1.02133 0.94889 1.04300 1.46048 1.54179 1.32719 1.04090 1.18378 0.78835 0.83017 0.83662 1.90655 1.39056 1.27337 1.87277 1.19724 1.01744 0.98150 0.92054 1.20983 1.03111 0.97268 0.98975 1.21022 0.98232 0.99306 0.91438 1.21465 1.06926 0.98556 0.98018 1.17788 0.91770 0.91452 0.92643 1.19483 1.05358 1.34442 0.92347 0.93109 1.26887 1.05066 0.91413 0.93621 1.69704 1.39357 1.38122 1.00655 0.85467 0.76257 0.80022 0.78929 1.17067 1.20602 1.17770 1.21198 1.05160 1.00285 0.91667 1.23293 0.83907 1.03109 0.87076 0.81544 1.86729 1.73905 1.31352 1.40475 1.21836 0.94184 0.73930 0.73660 1.93165 1.93486 1.33951 1.95376 1.93219 1.90531 1.77971 1.54175 1.93125 1.87651 1.86642 1.48707 0.92489 0.88829 0.91464 0.88492 0.91583 0.92076 0.74761 0.83869 0.83687 0.87431 0.89469 0.88933 0.74753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.01 8.19 71.98 0.59 -2.42 16 2 C 0.14 2.71 0.58 3.60 0.00 2.71 16 3 C -0.18 -3.70 6.84 71.98 0.49 -3.21 16 4 N -0.71 -17.39 4.37 -425.74 -1.86 -19.24 16 5 C 0.57 20.08 7.19 86.79 0.62 20.71 16 6 O -0.56 -22.98 12.64 -3.88 -0.05 -23.03 16 7 C -0.11 -4.53 5.87 -20.13 -0.12 -4.65 16 8 C -0.18 -6.18 9.55 22.70 0.22 -5.96 16 9 C -0.08 -2.94 10.01 22.17 0.22 -2.72 16 10 C -0.23 -10.24 7.17 22.77 0.16 -10.08 16 11 C 0.07 3.37 5.13 -21.32 -0.11 3.26 16 12 C -0.49 -27.84 9.59 23.47 0.23 -27.61 16 13 H 0.05 3.18 8.06 -2.91 -0.02 3.16 16 14 C 0.04 2.37 5.44 85.25 0.46 2.84 16 15 N -0.85 -47.10 13.93 21.82 0.30 -46.80 16 16 Si 0.97 41.85 24.46 68.60 1.68 43.53 16 17 H -0.25 -9.62 6.49 99.48 0.65 -8.97 16 18 H -0.28 -11.38 7.11 99.48 0.71 -10.68 16 19 H -0.25 -11.15 6.93 99.48 0.69 -10.46 16 20 C -0.16 -7.91 9.34 23.01 0.21 -7.69 16 21 C 0.09 1.16 2.59 30.59 0.08 1.24 16 22 H 0.17 1.58 8.14 -2.39 -0.02 1.56 16 23 O -0.52 -5.63 12.43 -148.98 -1.85 -7.48 16 24 C 0.42 6.59 2.69 71.98 0.19 6.78 16 25 F -0.18 -2.97 13.37 44.97 0.60 -2.37 16 26 F -0.18 -2.95 17.30 44.97 0.78 -2.17 16 27 F -0.18 -3.31 14.47 44.97 0.65 -2.66 16 28 H 0.06 1.57 6.16 -2.39 -0.01 1.55 16 29 H 0.09 1.41 7.56 -2.38 -0.02 1.39 16 30 H 0.07 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.10 1.24 6.49 -2.39 -0.02 1.23 16 32 H 0.07 1.45 6.03 -2.38 -0.01 1.43 16 33 H 0.06 1.68 6.43 -2.39 -0.02 1.67 16 34 H 0.41 8.35 4.51 -92.71 -0.42 7.93 16 35 H 0.14 3.48 6.38 -2.91 -0.02 3.46 16 36 H 0.15 3.97 8.06 -2.91 -0.02 3.95 16 37 H 0.11 4.72 4.36 -2.91 -0.01 4.70 16 38 H 0.29 14.55 8.30 -92.71 -0.77 13.79 16 39 H 0.09 4.80 7.64 -2.91 -0.02 4.78 16 40 H 0.40 2.27 6.92 -74.06 -0.51 1.76 16 Total: -1.00 -67.21 326.84 3.64 -63.58 By element: Atomic # 1 Polarization: 23.34 SS G_CDS: 0.13 Total: 23.47 kcal Atomic # 6 Polarization: -30.08 SS G_CDS: 3.26 Total: -26.82 kcal Atomic # 7 Polarization: -64.49 SS G_CDS: -1.55 Total: -66.04 kcal Atomic # 8 Polarization: -28.61 SS G_CDS: -1.90 Total: -30.51 kcal Atomic # 9 Polarization: -9.23 SS G_CDS: 2.03 Total: -7.20 kcal Atomic # 14 Polarization: 41.85 SS G_CDS: 1.68 Total: 43.53 kcal Total: -67.21 3.64 -63.58 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647604238.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -167.907 kcal (2) G-P(sol) polarization free energy of solvation -67.214 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -235.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.637 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -231.484 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds