Wall clock time and date at job start Tue Mar 31 2020 16:54:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52991 * 109.47178 * 2 1 4 4 H 1.09002 * 109.47157 * 304.51347 * 3 2 1 5 5 C 1.50699 * 109.47206 * 184.51535 * 3 2 1 6 6 H 1.08004 * 120.00347 * 245.62441 * 5 3 2 7 7 C 1.37881 * 120.00173 * 65.62249 * 5 3 2 8 8 N 1.31509 * 120.00318 * 195.78335 * 7 5 3 9 9 Si 1.86800 * 119.99770 * 15.78895 * 7 5 3 10 10 H 1.48498 * 109.47334 * 180.02562 * 9 7 5 11 11 H 1.48508 * 109.46877 * 299.99743 * 9 7 5 12 12 H 1.48501 * 109.47638 * 59.99584 * 9 7 5 13 13 O 1.45199 * 109.47308 * 64.51367 * 3 2 1 14 14 C 1.34232 * 117.00062 * 270.00013 * 13 3 2 15 15 O 1.20825 * 119.99721 * 359.97438 * 14 13 3 16 16 C 1.50698 * 119.99837 * 179.97438 * 14 13 3 17 17 N 1.46500 * 109.46965 * 179.97438 * 16 14 13 18 18 C 1.47083 * 121.24827 * 84.99997 * 17 16 14 19 19 C 1.52630 * 110.02900 * 119.57324 * 18 17 16 20 20 C 1.52959 * 110.93288 * 67.71906 * 19 18 17 21 21 C 1.53248 * 109.06275 * 294.03672 * 20 19 18 22 22 C 1.52506 * 118.25966 * 269.87001 * 21 20 19 23 23 C 1.52472 * 118.32109 * 200.34895 * 21 20 19 24 24 S 1.66761 * 121.25493 * 264.71844 * 17 16 14 25 25 O 1.42100 * 104.66970 * 341.52819 * 24 17 16 26 26 O 1.42098 * 104.67251 * 110.21946 * 24 17 16 27 27 H 1.09005 * 109.47387 * 300.00153 * 1 2 3 28 28 H 1.09005 * 109.47269 * 60.00199 * 1 2 3 29 29 H 1.09001 * 109.47481 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46897 * 239.99885 * 2 1 3 31 31 H 1.08996 * 109.46881 * 120.00217 * 2 1 3 32 32 H 0.97001 * 120.00286 * 354.88832 * 8 7 5 33 33 H 1.09000 * 109.47411 * 299.99911 * 16 14 13 34 34 H 1.09008 * 109.47165 * 60.00013 * 16 14 13 35 35 H 1.09000 * 109.38198 * 239.74118 * 18 17 16 36 36 H 1.09000 * 109.38227 * 359.40666 * 18 17 16 37 37 H 1.09000 * 109.19022 * 188.09039 * 19 18 17 38 38 H 1.09005 * 109.18590 * 307.34847 * 19 18 17 39 39 H 1.08998 * 109.54125 * 53.90840 * 20 19 18 40 40 H 1.08997 * 109.53843 * 174.08028 * 20 19 18 41 41 H 1.08994 * 117.51418 * 359.18785 * 22 21 20 42 42 H 1.08994 * 117.51161 * 144.29782 * 22 21 20 43 43 H 1.09004 * 117.51227 * 215.61286 * 23 21 20 44 44 H 1.08999 * 117.50838 * 0.66507 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6121 1.9791 -0.8468 5 6 3.5428 1.4439 -0.1119 6 1 4.1450 1.8079 0.7075 7 6 4.1492 0.9804 -1.2602 8 7 5.4313 0.6879 -1.2547 9 14 3.1494 0.7682 -2.8238 10 1 4.0278 0.2598 -3.9078 11 1 2.0513 -0.2018 -2.5813 12 1 2.5740 2.0771 -3.2251 13 8 1.6460 2.0951 1.2357 14 6 0.4627 2.7289 1.2397 15 8 -0.2209 2.7384 0.2435 16 6 -0.0130 3.4287 2.4868 17 7 -1.3210 4.0388 2.2355 18 6 -2.5638 3.2651 2.3780 19 6 -3.4544 3.8983 3.4435 20 6 -3.9747 5.2606 2.9819 21 6 -2.7951 6.2310 2.8581 22 6 -2.4105 7.0597 4.0792 23 6 -3.0847 7.7279 2.8778 24 16 -1.4573 5.6383 1.7840 25 8 -0.2160 6.2234 2.1529 26 8 -1.8813 5.5948 0.4285 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 5.9665 0.8676 -0.4659 33 1 -0.0984 2.7064 3.2986 34 1 0.7019 4.2037 2.7637 35 1 -3.0931 3.2522 1.4253 36 1 -2.3221 2.2430 2.6695 37 1 -4.3005 3.2399 3.6408 38 1 -2.8798 4.0264 4.3609 39 1 -4.4632 5.1552 2.0132 40 1 -4.6888 5.6441 3.7106 41 1 -3.0058 6.9306 4.9831 42 1 -1.3511 7.2606 4.2381 43 1 -2.4687 8.3683 2.2465 44 1 -4.1235 8.0382 2.9910 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649216716.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:33 Heat of formation + Delta-G solvation = -127.338456 kcal Electronic energy + Delta-G solvation = -28094.606310 eV Core-core repulsion = 24140.404923 eV Total energy + Delta-G solvation = -3954.201387 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -39.84431 -38.77163 -37.32018 -36.90085 -36.00175 -35.62230 -33.54131 -32.71338 -31.85138 -28.48846 -27.42622 -26.33863 -23.37247 -22.93289 -22.42637 -21.54027 -21.27479 -19.63094 -18.63146 -17.79745 -17.58109 -17.26060 -16.91997 -16.33787 -15.78314 -15.54658 -15.29366 -14.84316 -14.35312 -14.14309 -13.99903 -13.70632 -13.26576 -13.06472 -12.79099 -12.63717 -12.46475 -12.32032 -12.24798 -12.16763 -12.03840 -11.95918 -11.68555 -11.53479 -11.43426 -11.27602 -11.12724 -10.89647 -10.78493 -10.51585 -10.49272 -10.12236 -9.93924 -9.63225 -9.52217 -9.06189 -8.80964 -8.34476 -6.60320 -4.21202 0.06993 2.26813 2.82316 2.85917 3.34312 3.43846 3.44490 3.57163 3.64094 3.93201 4.01724 4.11965 4.35984 4.39758 4.48906 4.65084 4.73365 4.90057 5.02715 5.08944 5.13901 5.24363 5.30881 5.34169 5.39167 5.42901 5.46575 5.49124 5.56391 5.78648 5.85387 5.91458 5.98655 6.09364 6.29812 6.48919 6.63700 6.81601 6.85247 7.21127 7.43486 7.85984 8.28115 8.52265 8.87708 9.46706 10.82569 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.023045 B = 0.003521 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.721056 B = 7950.474337 C = 8298.259327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.148 4.148 3 C 0.200 3.800 4 H 0.039 0.961 5 C -0.605 4.605 6 H 0.069 0.931 7 C 0.039 3.961 8 N -0.895 5.895 9 Si 1.035 2.965 10 H -0.279 1.279 11 H -0.269 1.269 12 H -0.278 1.278 13 O -0.344 6.344 14 C 0.422 3.578 15 O -0.501 6.501 16 C 0.133 3.867 17 N -0.976 5.976 18 C 0.114 3.886 19 C -0.151 4.151 20 C -0.064 4.064 21 C -0.642 4.642 22 C -0.118 4.118 23 C -0.126 4.126 24 S 2.632 3.368 25 O -0.952 6.952 26 O -0.932 6.932 27 H 0.040 0.960 28 H 0.055 0.945 29 H 0.039 0.961 30 H 0.079 0.921 31 H 0.061 0.939 32 H 0.271 0.729 33 H 0.118 0.882 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.079 0.921 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.112 0.888 42 H 0.117 0.883 43 H 0.106 0.894 44 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.500 9.432 13.959 27.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C 0.146 3.854 4 H 0.056 0.944 5 C -0.643 4.643 6 H 0.087 0.913 7 C -0.167 4.167 8 N -0.529 5.529 9 Si 0.863 3.137 10 H -0.205 1.205 11 H -0.195 1.195 12 H -0.204 1.204 13 O -0.259 6.259 14 C 0.262 3.738 15 O -0.390 6.390 16 C 0.006 3.994 17 N -0.814 5.814 18 C -0.011 4.011 19 C -0.190 4.190 20 C -0.102 4.102 21 C -0.731 4.731 22 C -0.156 4.156 23 C -0.164 4.164 24 S 2.724 3.276 25 O -0.942 6.942 26 O -0.922 6.922 27 H 0.059 0.941 28 H 0.074 0.926 29 H 0.059 0.941 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.136 0.864 34 H 0.147 0.853 35 H 0.098 0.902 36 H 0.110 0.890 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.099 0.901 41 H 0.131 0.869 42 H 0.135 0.865 43 H 0.124 0.876 44 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -21.018 9.297 11.394 25.652 hybrid contribution -0.600 0.286 1.964 2.073 sum -21.617 9.583 13.358 27.158 Atomic orbital electron populations 1.21898 0.97462 0.99681 1.01464 1.22434 0.93770 0.99388 1.02976 1.20933 0.96217 0.88024 0.80257 0.94372 1.21957 0.88672 1.49021 1.04654 0.91286 1.25651 0.97381 0.92658 1.00985 1.70862 1.07179 1.40922 1.33889 0.84198 0.75570 0.77896 0.76075 1.20457 1.19505 1.20355 1.86524 1.34057 1.62293 1.43055 1.24127 0.81164 0.77917 0.90631 1.90652 1.55755 1.57737 1.34859 1.20757 0.84381 0.99962 0.94314 1.57154 1.10046 1.27859 1.86296 1.21497 0.83507 0.96921 0.99176 1.22076 1.00575 0.96391 0.99908 1.20955 0.93630 0.92324 1.03296 1.31893 1.19290 1.03217 1.18657 1.22880 1.03121 0.98160 0.91448 1.22805 1.03863 0.88331 1.01439 1.04529 0.74784 0.73286 0.74990 1.93587 1.39272 1.76634 1.84730 1.93642 1.83502 1.84705 1.30348 0.94070 0.92622 0.94142 0.90285 0.92003 0.91852 0.86405 0.85327 0.90211 0.88965 0.89141 0.90264 0.89993 0.90113 0.86938 0.86468 0.87584 0.86658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.92 8.56 37.16 0.32 -2.60 16 2 C -0.15 -3.40 5.32 -26.74 -0.14 -3.54 16 3 C 0.20 5.16 1.84 -27.89 -0.05 5.11 16 4 H 0.04 1.05 5.84 -51.93 -0.30 0.75 16 5 C -0.61 -17.70 9.17 -34.44 -0.32 -18.01 16 6 H 0.07 2.15 8.06 -52.48 -0.42 1.73 16 7 C 0.04 1.15 5.33 -17.82 -0.10 1.06 16 8 N -0.90 -27.45 13.69 55.43 0.76 -26.69 16 9 Si 1.04 25.75 26.27 -169.99 -4.47 21.28 16 10 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 11 H -0.27 -6.14 5.61 56.52 0.32 -5.82 16 12 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 13 O -0.34 -8.05 9.80 -39.26 -0.38 -8.43 16 14 C 0.42 8.54 6.46 36.00 0.23 8.77 16 15 O -0.50 -11.35 13.57 -18.75 -0.25 -11.61 16 16 C 0.13 1.90 6.28 -5.19 -0.03 1.86 16 17 N -0.98 -12.66 2.49 -115.43 -0.29 -12.94 16 18 C 0.11 1.11 6.27 -3.91 -0.02 1.08 16 19 C -0.15 -0.93 5.79 -26.94 -0.16 -1.09 16 20 C -0.06 -0.42 5.61 -26.62 -0.15 -0.57 16 21 C -0.64 -5.47 2.34 -91.01 -0.21 -5.68 16 22 C -0.12 -0.77 9.92 -26.93 -0.27 -1.04 16 23 C -0.13 -0.85 10.06 -26.94 -0.27 -1.12 16 24 S 2.63 36.69 5.65 -107.50 -0.61 36.08 16 25 O -0.95 -15.37 15.98 -57.48 -0.92 -16.29 16 26 O -0.93 -16.95 18.12 -57.48 -1.04 -17.99 16 27 H 0.04 0.77 6.07 -51.93 -0.32 0.45 16 28 H 0.05 1.15 7.77 -51.93 -0.40 0.75 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.08 1.86 4.67 -51.93 -0.24 1.62 16 31 H 0.06 1.38 8.14 -51.93 -0.42 0.96 16 32 H 0.27 8.24 8.73 -40.82 -0.36 7.88 16 33 H 0.12 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.13 1.77 6.91 -51.92 -0.36 1.41 16 35 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.09 0.79 7.95 -51.93 -0.41 0.38 16 37 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 39 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.08 0.38 8.12 -51.93 -0.42 -0.05 16 41 H 0.11 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.12 0.82 7.74 -51.93 -0.40 0.42 16 43 H 0.11 0.71 8.14 -51.93 -0.42 0.28 16 44 H 0.12 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 361.59 15.07 5.45 5.45 Total: -1.00 -37.52 361.59 -9.66 -47.18 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.74 Total: -0.28 kcal Atomic # 6 Polarization: -14.60 SS G_CDS: -1.17 Total: -15.76 kcal Atomic # 7 Polarization: -40.11 SS G_CDS: 0.47 Total: -39.63 kcal Atomic # 8 Polarization: -51.72 SS G_CDS: -2.60 Total: -54.32 kcal Atomic # 14 Polarization: 25.75 SS G_CDS: -4.47 Total: 21.28 kcal Atomic # 16 Polarization: 36.69 SS G_CDS: -0.61 Total: 36.08 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.52 -9.66 -47.18 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649216716.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.156 kcal (2) G-P(sol) polarization free energy of solvation -37.520 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.182 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds