Wall clock time and date at job start Tue Mar 31 2020 16:54:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34229 * 116.99670 * 89.99710 * 13 3 2 15 15 O 1.20819 * 120.00442 * 0.02562 * 14 13 3 16 16 C 1.50708 * 119.99467 * 180.02562 * 14 13 3 17 17 N 1.46499 * 109.46674 * 179.97438 * 16 14 13 18 18 C 1.47085 * 121.24820 * 274.71038 * 17 16 14 19 19 C 1.52160 * 110.27847 * 240.42340 * 18 17 16 20 20 C 1.52956 * 111.01531 * 292.46507 * 19 18 17 21 21 C 1.53246 * 109.06023 * 65.84395 * 20 19 18 22 22 C 1.52497 * 118.25337 * 90.19529 * 21 20 19 23 23 C 1.52482 * 118.29543 * 159.70195 * 21 20 19 24 24 S 1.66763 * 121.24942 * 95.00017 * 17 16 14 25 25 O 1.42094 * 104.67499 * 249.78008 * 24 17 16 26 26 O 1.42107 * 104.67560 * 18.47353 * 24 17 16 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47054 * 299.99621 * 16 14 13 34 34 H 1.08998 * 109.47040 * 59.99554 * 16 14 13 35 35 H 1.08997 * 109.37669 * 0.61196 * 18 17 16 36 36 H 1.09000 * 109.37244 * 120.27479 * 18 17 16 37 37 H 1.08997 * 109.23264 * 172.01358 * 19 18 17 38 38 H 1.08994 * 109.06563 * 52.80935 * 19 18 17 39 39 H 1.08996 * 109.54058 * 305.97238 * 20 19 18 40 40 H 1.08997 * 109.60812 * 185.75819 * 20 19 18 41 41 H 1.09007 * 117.51238 * 215.67502 * 22 21 20 42 42 H 1.09004 * 117.51501 * 0.77400 * 22 21 20 43 43 H 1.09004 * 117.50764 * 359.29442 * 23 21 20 44 44 H 1.08998 * 117.50733 * 144.34854 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 8 1.6559 2.0917 -1.2407 14 6 0.4728 2.7254 -1.2558 15 8 -0.2188 2.7377 -0.2652 16 6 0.0070 3.4217 -2.5087 17 7 -1.3035 4.0314 -2.2699 18 6 -2.5448 3.2582 -2.4270 19 6 -3.4261 3.8870 -3.4961 20 6 -3.9514 5.2499 -3.0422 21 6 -2.7736 6.2213 -2.9097 22 6 -2.3796 7.0486 -4.1287 23 6 -3.0648 7.7179 -2.9342 24 16 -1.4442 5.6301 -1.8169 25 8 -1.8823 5.5842 -0.4659 26 8 -0.1991 6.2159 -2.1717 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0605 2.9503 33 1 0.7240 4.1959 -2.7820 34 1 -0.0719 2.6971 -3.3191 35 1 -2.3001 2.2366 -2.7176 36 1 -3.0841 3.2437 -1.4798 37 1 -4.2699 3.2276 -3.6994 38 1 -2.8436 4.0135 -4.4086 39 1 -4.4486 5.1462 -2.0778 40 1 -4.6587 5.6328 -3.7778 41 1 -1.3189 7.2505 -4.2788 42 1 -2.9668 6.9174 -5.0376 43 1 -4.1028 8.0269 -3.0574 44 1 -2.4553 8.3598 -2.2982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001649216717.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:36 Heat of formation + Delta-G solvation = -128.392566 kcal Electronic energy + Delta-G solvation = -27983.161235 eV Core-core repulsion = 24028.914139 eV Total energy + Delta-G solvation = -3954.247096 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -39.62865 -38.70594 -37.24594 -36.76989 -35.92717 -35.44210 -33.46099 -32.64635 -31.31374 -28.35816 -27.20057 -26.24399 -23.37638 -23.16549 -22.67586 -21.45274 -20.95575 -19.47772 -18.52356 -17.53709 -17.18989 -17.04531 -16.52701 -16.17850 -15.56263 -15.34851 -15.12378 -14.83110 -14.38205 -14.22270 -14.07689 -13.65598 -13.15085 -12.83520 -12.80453 -12.58341 -12.25249 -12.16383 -11.98729 -11.97199 -11.88318 -11.52627 -11.45070 -11.34768 -11.26435 -11.13391 -11.03937 -10.88960 -10.72260 -10.62751 -10.43779 -10.24808 -9.92669 -9.73217 -9.33835 -8.93413 -8.75840 -8.40183 -6.13517 -4.20528 0.13694 2.34370 2.89024 3.04612 3.30215 3.33367 3.35890 3.55461 3.75582 4.00469 4.07876 4.17971 4.37918 4.44139 4.55842 4.72126 4.80022 4.97329 5.07229 5.16295 5.18175 5.30456 5.38909 5.41865 5.47176 5.50493 5.53473 5.59104 5.71738 5.92627 5.93553 6.24800 6.31282 6.39627 6.49156 6.90041 7.00698 7.20927 7.30232 7.66527 7.78824 8.00680 8.20899 8.69088 8.94162 9.44403 10.93221 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.003320 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.879340 B = 8431.046132 C = 9023.708917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.135 4.135 3 C 0.221 3.779 4 H 0.047 0.953 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.062 3.938 8 N -0.888 5.888 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.357 6.357 14 C 0.422 3.578 15 O -0.499 6.499 16 C 0.132 3.868 17 N -0.974 5.974 18 C 0.115 3.885 19 C -0.150 4.150 20 C -0.064 4.064 21 C -0.638 4.638 22 C -0.118 4.118 23 C -0.127 4.127 24 S 2.630 3.370 25 O -0.931 6.931 26 O -0.952 6.952 27 H 0.031 0.969 28 H 0.053 0.947 29 H 0.032 0.968 30 H 0.108 0.892 31 H 0.041 0.959 32 H 0.266 0.734 33 H 0.127 0.873 34 H 0.116 0.884 35 H 0.092 0.908 36 H 0.079 0.921 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.080 0.920 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.114 0.886 44 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.183 9.729 -15.501 24.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.173 4.173 3 C 0.168 3.832 4 H 0.065 0.935 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.526 5.526 9 Si 0.739 3.261 10 H -0.200 1.200 11 H -0.211 1.211 12 H -0.200 1.200 13 O -0.273 6.273 14 C 0.262 3.738 15 O -0.388 6.388 16 C 0.005 3.995 17 N -0.813 5.813 18 C -0.011 4.011 19 C -0.189 4.189 20 C -0.102 4.102 21 C -0.727 4.727 22 C -0.156 4.156 23 C -0.166 4.166 24 S 2.722 3.278 25 O -0.921 6.921 26 O -0.943 6.943 27 H 0.050 0.950 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.126 0.874 31 H 0.060 0.940 32 H 0.076 0.924 33 H 0.145 0.855 34 H 0.134 0.866 35 H 0.110 0.890 36 H 0.097 0.903 37 H 0.108 0.892 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.135 0.865 42 H 0.130 0.870 43 H 0.133 0.867 44 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.809 10.033 -14.306 23.564 hybrid contribution 0.345 -0.362 -0.147 0.521 sum -15.465 9.672 -14.453 23.272 Atomic orbital electron populations 1.21851 0.98407 0.98830 1.00771 1.22008 0.92600 0.99364 1.03312 1.20676 0.95000 0.88728 0.78784 0.93492 1.21020 0.89711 1.38945 1.06291 0.91323 1.24890 0.99239 0.94804 0.95051 1.69884 1.35452 1.37846 1.09432 0.86333 0.83902 0.78496 0.77393 1.19966 1.21085 1.19960 1.86461 1.34094 1.62505 1.44195 1.23976 0.81352 0.78000 0.90472 1.90661 1.55246 1.57513 1.35364 1.20763 0.84225 0.99895 0.94584 1.57115 1.10020 1.27822 1.86300 1.21383 0.83670 0.96948 0.99075 1.21987 1.00590 0.96392 0.99936 1.20958 0.93644 0.92353 1.03269 1.31937 1.19124 1.03050 1.18577 1.22866 1.02962 0.98256 0.91527 1.22801 1.03760 0.88490 1.01517 1.04626 0.74807 0.73350 0.75022 1.93646 1.83221 1.84690 1.30524 1.93582 1.39013 1.76675 1.84993 0.95007 0.92792 0.94930 0.87378 0.94009 0.92372 0.85502 0.86578 0.88965 0.90275 0.89171 0.90317 0.90013 0.90186 0.86521 0.87002 0.86731 0.87623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.11 8.57 37.16 0.32 -2.79 16 2 C -0.13 -3.38 5.49 -26.74 -0.15 -3.53 16 3 C 0.22 6.01 2.25 -27.89 -0.06 5.95 16 4 H 0.05 1.43 7.16 -51.93 -0.37 1.06 16 5 C -0.52 -14.92 8.90 -34.44 -0.31 -15.22 16 6 H 0.07 1.93 7.81 -52.49 -0.41 1.52 16 7 C 0.06 1.74 5.29 -17.82 -0.09 1.65 16 8 N -0.89 -25.59 11.29 55.43 0.63 -24.96 16 9 Si 0.91 21.46 29.54 -169.99 -5.02 16.44 16 10 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 11 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 12 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 13 O -0.36 -8.56 9.81 -39.26 -0.39 -8.95 16 14 C 0.42 8.92 6.48 36.01 0.23 9.15 16 15 O -0.50 -11.97 13.57 -18.74 -0.25 -12.23 16 16 C 0.13 1.96 6.28 -5.19 -0.03 1.93 16 17 N -0.97 -13.21 2.49 -115.69 -0.29 -13.50 16 18 C 0.11 1.19 6.24 -4.15 -0.03 1.16 16 19 C -0.15 -1.01 5.77 -27.18 -0.16 -1.16 16 20 C -0.06 -0.45 5.62 -26.63 -0.15 -0.60 16 21 C -0.64 -5.67 2.35 -91.02 -0.21 -5.88 16 22 C -0.12 -0.80 9.93 -26.93 -0.27 -1.07 16 23 C -0.13 -0.90 10.07 -26.94 -0.27 -1.17 16 24 S 2.63 37.80 5.68 -107.50 -0.61 37.19 16 25 O -0.93 -17.48 18.12 -57.48 -1.04 -18.52 16 26 O -0.95 -15.67 16.02 -57.48 -0.92 -16.59 16 27 H 0.03 0.65 6.06 -51.93 -0.31 0.34 16 28 H 0.05 1.27 7.80 -51.93 -0.40 0.86 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.11 2.95 5.95 -51.93 -0.31 2.64 16 31 H 0.04 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.13 1.79 6.92 -51.93 -0.36 1.43 16 34 H 0.12 1.27 8.09 -51.93 -0.42 0.85 16 35 H 0.09 0.87 7.95 -51.93 -0.41 0.46 16 36 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 40 H 0.08 0.40 8.11 -51.93 -0.42 -0.02 16 41 H 0.12 0.84 7.77 -51.93 -0.40 0.44 16 42 H 0.11 0.52 8.14 -51.93 -0.42 0.10 16 43 H 0.11 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 366.27 15.07 5.52 5.52 Total: -1.00 -36.41 366.27 -10.32 -46.73 By element: Atomic # 1 Polarization: 7.21 SS G_CDS: -6.77 Total: 0.44 kcal Atomic # 6 Polarization: -10.41 SS G_CDS: -1.18 Total: -11.59 kcal Atomic # 7 Polarization: -38.80 SS G_CDS: 0.34 Total: -38.46 kcal Atomic # 8 Polarization: -53.68 SS G_CDS: -2.60 Total: -56.28 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Atomic # 16 Polarization: 37.80 SS G_CDS: -0.61 Total: 37.19 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -36.41 -10.32 -46.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649216717.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.660 kcal (2) G-P(sol) polarization free energy of solvation -36.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.075 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds