Wall clock time and date at job start Tue Mar 31 2020 16:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52992 * 109.47482 * 2 1 4 4 H 1.09002 * 109.46906 * 55.00224 * 3 2 1 5 5 C 1.50699 * 109.47482 * 174.99860 * 3 2 1 6 6 H 1.08000 * 120.00147 * 120.00321 * 5 3 2 7 7 C 1.37878 * 120.00379 * 300.00215 * 5 3 2 8 8 N 1.31518 * 119.99761 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 120.00461 * 179.97438 * 7 5 3 10 10 H 1.48495 * 109.46941 * 59.99620 * 9 7 5 11 11 H 1.48492 * 109.47261 * 180.02562 * 9 7 5 12 12 H 1.48506 * 109.46544 * 300.00112 * 9 7 5 13 13 O 1.45204 * 109.47283 * 295.00220 * 3 2 1 14 14 C 1.34229 * 116.99670 * 89.99710 * 13 3 2 15 15 O 1.20819 * 120.00442 * 0.02562 * 14 13 3 16 16 C 1.50708 * 119.99467 * 180.02562 * 14 13 3 17 17 N 1.46499 * 109.46674 * 179.97438 * 16 14 13 18 18 C 1.47085 * 121.24820 * 274.71038 * 17 16 14 19 19 C 1.52160 * 110.27847 * 240.42340 * 18 17 16 20 20 C 1.52956 * 111.01531 * 292.46507 * 19 18 17 21 21 C 1.53246 * 109.06023 * 65.84395 * 20 19 18 22 22 C 1.52497 * 118.25337 * 90.19529 * 21 20 19 23 23 C 1.52482 * 118.29543 * 159.70195 * 21 20 19 24 24 S 1.66763 * 121.24942 * 95.00017 * 17 16 14 25 25 O 1.42094 * 104.67499 * 249.78008 * 24 17 16 26 26 O 1.42107 * 104.67560 * 18.47353 * 24 17 16 27 27 H 1.09002 * 109.47153 * 59.99783 * 1 2 3 28 28 H 1.09001 * 109.46832 * 299.99974 * 1 2 3 29 29 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 30 30 H 1.09002 * 109.47153 * 120.00216 * 2 1 3 31 31 H 1.08998 * 109.47533 * 239.99846 * 2 1 3 32 32 H 0.96999 * 120.00301 * 180.02562 * 8 7 5 33 33 H 1.09002 * 109.47054 * 299.99621 * 16 14 13 34 34 H 1.08998 * 109.47040 * 59.99554 * 16 14 13 35 35 H 1.08997 * 109.37669 * 0.61196 * 18 17 16 36 36 H 1.09000 * 109.37244 * 120.27479 * 18 17 16 37 37 H 1.08997 * 109.23264 * 172.01358 * 19 18 17 38 38 H 1.08994 * 109.06563 * 52.80935 * 19 18 17 39 39 H 1.08996 * 109.54058 * 305.97238 * 20 19 18 40 40 H 1.08997 * 109.60812 * 185.75819 * 20 19 18 41 41 H 1.09007 * 117.51238 * 215.67502 * 22 21 20 42 42 H 1.09004 * 117.51501 * 0.77400 * 22 21 20 43 43 H 1.09004 * 117.50764 * 359.29442 * 23 21 20 44 44 H 1.08998 * 117.50733 * 144.34854 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6055 1.9814 0.8419 5 6 3.5419 1.4442 0.1239 6 1 4.1473 1.8888 -0.6522 7 6 4.1434 0.8783 1.2280 8 7 3.4063 0.3373 2.1733 9 14 6.0050 0.8799 1.3812 10 1 6.5005 2.2797 1.3808 11 1 6.3979 0.2155 2.6498 12 1 6.5966 0.1451 0.2342 13 8 1.6559 2.0917 -1.2407 14 6 0.4728 2.7254 -1.2558 15 8 -0.2188 2.7377 -0.2652 16 6 0.0070 3.4217 -2.5087 17 7 -1.3035 4.0314 -2.2699 18 6 -2.5448 3.2582 -2.4270 19 6 -3.4261 3.8870 -3.4961 20 6 -3.9514 5.2499 -3.0422 21 6 -2.7736 6.2213 -2.9097 22 6 -2.3796 7.0486 -4.1287 23 6 -3.0648 7.7179 -2.9342 24 16 -1.4442 5.6301 -1.8169 25 8 -1.8823 5.5842 -0.4659 26 8 -0.1991 6.2159 -2.1717 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8933 -0.5139 0.8900 31 1 1.8934 -0.5138 -0.8899 32 1 3.8293 -0.0605 2.9503 33 1 0.7240 4.1959 -2.7820 34 1 -0.0719 2.6971 -3.3191 35 1 -2.3001 2.2366 -2.7176 36 1 -3.0841 3.2437 -1.4798 37 1 -4.2699 3.2276 -3.6994 38 1 -2.8436 4.0135 -4.4086 39 1 -4.4486 5.1462 -2.0778 40 1 -4.6587 5.6328 -3.7778 41 1 -1.3189 7.2505 -4.2788 42 1 -2.9668 6.9174 -5.0376 43 1 -4.1028 8.0269 -3.0574 44 1 -2.4553 8.3598 -2.2982 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001649216717.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:54:35 Heat of formation + Delta-G solvation = -154.054401 kcal Electronic energy + Delta-G solvation = -27984.274016 eV Core-core repulsion = 24028.914139 eV Total energy + Delta-G solvation = -3955.359877 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.39952 -39.37875 -38.41231 -38.10698 -37.14333 -36.98517 -35.51267 -33.60732 -33.23501 -29.75043 -28.82834 -27.25868 -25.23139 -23.92663 -23.51496 -22.64066 -22.19112 -21.37226 -19.64339 -18.91979 -18.74595 -18.34854 -17.94327 -17.39678 -17.20269 -16.83197 -16.35106 -16.27510 -15.65191 -15.05542 -14.93107 -14.79789 -14.76381 -14.38667 -14.23302 -13.60018 -13.45381 -13.38022 -13.34522 -13.26376 -13.24691 -13.15207 -12.80392 -12.73574 -12.55733 -12.54232 -12.37972 -12.20626 -12.15984 -11.77380 -11.72432 -11.58050 -11.39519 -11.30774 -11.14902 -10.83437 -10.54368 -10.11842 -8.28524 -6.46111 -0.89377 1.29866 1.36005 1.40193 1.44232 1.52301 2.06468 2.24972 2.41262 2.65797 3.00597 3.20069 3.36226 3.47956 3.68579 3.74821 3.93054 4.06400 4.13172 4.33482 4.35500 4.38021 4.39193 4.44695 4.57277 4.59502 4.63214 4.81767 4.82796 4.87654 4.94013 5.00436 5.06465 5.07130 5.09443 5.21137 5.37416 5.37982 5.46823 5.50194 5.66630 5.97954 6.12855 6.59365 6.99128 7.25779 8.78016 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.023118 B = 0.003320 C = 0.003102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1210.879340 B = 8431.046132 C = 9023.708917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.127 4.127 3 C 0.223 3.777 4 H -0.003 1.003 5 C -0.553 4.553 6 H 0.067 0.933 7 C 0.015 3.985 8 N -0.916 5.916 9 Si 0.983 3.017 10 H -0.271 1.271 11 H -0.277 1.277 12 H -0.260 1.260 13 O -0.363 6.363 14 C 0.411 3.589 15 O -0.535 6.535 16 C 0.141 3.859 17 N -0.976 5.976 18 C 0.103 3.897 19 C -0.141 4.141 20 C -0.065 4.065 21 C -0.619 4.619 22 C -0.100 4.100 23 C -0.129 4.129 24 S 2.602 3.398 25 O -0.999 6.999 26 O -0.988 6.988 27 H 0.042 0.958 28 H 0.027 0.973 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.051 0.949 32 H 0.270 0.730 33 H 0.134 0.866 34 H 0.166 0.834 35 H 0.103 0.897 36 H 0.055 0.945 37 H 0.119 0.881 38 H 0.097 0.903 39 H 0.071 0.929 40 H 0.119 0.881 41 H 0.109 0.891 42 H 0.150 0.850 43 H 0.146 0.854 44 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.611 9.958 -19.243 27.921 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.165 4.165 3 C 0.169 3.831 4 H 0.015 0.985 5 C -0.591 4.591 6 H 0.085 0.915 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.197 1.197 11 H -0.202 1.202 12 H -0.184 1.184 13 O -0.279 6.279 14 C 0.253 3.747 15 O -0.425 6.425 16 C 0.014 3.986 17 N -0.814 5.814 18 C -0.021 4.021 19 C -0.179 4.179 20 C -0.104 4.104 21 C -0.715 4.715 22 C -0.138 4.138 23 C -0.168 4.168 24 S 2.702 3.298 25 O -0.989 6.989 26 O -0.979 6.979 27 H 0.061 0.939 28 H 0.046 0.954 29 H 0.082 0.918 30 H 0.102 0.898 31 H 0.070 0.930 32 H 0.079 0.921 33 H 0.152 0.848 34 H 0.184 0.816 35 H 0.121 0.879 36 H 0.073 0.927 37 H 0.137 0.863 38 H 0.116 0.884 39 H 0.090 0.910 40 H 0.138 0.862 41 H 0.128 0.872 42 H 0.168 0.832 43 H 0.164 0.836 44 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -17.214 10.240 -18.017 26.941 hybrid contribution 0.670 -0.333 1.007 1.255 sum -16.543 9.907 -17.010 25.714 Atomic orbital electron populations 1.21692 0.96153 1.00565 1.00049 1.21830 0.94561 0.97668 1.02443 1.20366 0.94550 0.89502 0.78661 0.98489 1.21345 0.90584 1.40049 1.07097 0.91485 1.25855 1.04475 0.93845 0.94275 1.70022 1.37583 1.37924 1.09809 0.85239 0.77450 0.78701 0.78050 1.19659 1.20152 1.18425 1.86453 1.35982 1.63105 1.42345 1.25484 0.79859 0.77042 0.92334 1.90651 1.55904 1.58658 1.37317 1.21012 0.85040 1.00556 0.92026 1.57121 1.10442 1.27934 1.85856 1.21698 0.82862 0.97884 0.99692 1.21974 1.00808 0.96418 0.98718 1.21129 0.93103 0.92060 1.04081 1.31397 1.16908 1.04739 1.18408 1.23157 1.03311 0.95383 0.91989 1.23160 1.05702 0.86526 1.01394 1.04988 0.75896 0.73734 0.75141 1.93565 1.84129 1.85515 1.35676 1.93522 1.41900 1.77163 1.85285 0.93860 0.95379 0.91776 0.89816 0.93038 0.92051 0.84832 0.81634 0.87871 0.92672 0.86307 0.88420 0.91014 0.86246 0.87244 0.83231 0.83554 0.88365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.71 8.57 71.98 0.62 -5.09 16 2 C -0.13 -6.57 5.49 30.59 0.17 -6.41 16 3 C 0.22 12.76 2.25 29.85 0.07 12.82 16 4 H 0.00 -0.18 7.16 -2.39 -0.02 -0.19 16 5 C -0.55 -32.78 8.90 25.60 0.23 -32.56 16 6 H 0.07 3.87 7.81 -2.91 -0.02 3.85 16 7 C 0.02 0.87 5.29 84.65 0.45 1.32 16 8 N -0.92 -54.49 11.29 21.45 0.24 -54.25 16 9 Si 0.98 44.45 29.54 68.60 2.03 46.48 16 10 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.02 7.11 99.48 0.71 -11.32 16 12 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 13 O -0.36 -18.07 9.81 -51.41 -0.50 -18.58 16 14 C 0.41 18.02 6.48 71.24 0.46 18.48 16 15 O -0.54 -27.34 13.57 21.98 0.30 -27.05 16 16 C 0.14 4.12 6.28 85.64 0.54 4.66 16 17 N -0.98 -26.32 2.49 -519.95 -1.29 -27.62 16 18 C 0.10 2.02 6.24 85.99 0.54 2.55 16 19 C -0.14 -1.33 5.77 30.30 0.17 -1.16 16 20 C -0.07 -0.67 5.62 30.66 0.17 -0.50 16 21 C -0.62 -9.47 2.35 -11.05 -0.03 -9.50 16 22 C -0.10 -0.95 9.93 30.46 0.30 -0.65 16 23 C -0.13 -1.43 10.07 30.46 0.31 -1.12 16 24 S 2.60 77.46 5.68 -56.49 -0.32 77.14 16 25 O -1.00 -40.78 18.12 -127.71 -2.31 -43.10 16 26 O -0.99 -34.05 16.02 -127.71 -2.05 -36.10 16 27 H 0.04 1.80 6.06 -2.39 -0.01 1.78 16 28 H 0.03 1.37 7.80 -2.39 -0.02 1.35 16 29 H 0.06 2.43 8.14 -2.38 -0.02 2.41 16 30 H 0.08 4.75 5.95 -2.39 -0.01 4.74 16 31 H 0.05 2.51 8.14 -2.39 -0.02 2.49 16 32 H 0.27 15.05 8.31 -92.71 -0.77 14.28 16 33 H 0.13 3.78 6.92 -2.39 -0.02 3.76 16 34 H 0.17 3.17 8.09 -2.39 -0.02 3.15 16 35 H 0.10 1.75 7.95 -2.39 -0.02 1.73 16 36 H 0.05 1.32 8.14 -2.39 -0.02 1.30 16 37 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 40 H 0.12 0.43 8.11 -2.39 -0.02 0.41 16 41 H 0.11 1.28 7.77 -2.38 -0.02 1.26 16 42 H 0.15 0.40 8.14 -2.38 -0.02 0.38 16 43 H 0.15 0.76 8.14 -2.38 -0.02 0.74 16 44 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -87.68 366.27 1.08 -86.60 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: 1.00 Total: 13.60 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: 3.99 Total: -17.14 kcal Atomic # 7 Polarization: -80.82 SS G_CDS: -1.05 Total: -81.87 kcal Atomic # 8 Polarization: -120.25 SS G_CDS: -4.57 Total: -124.82 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 77.46 SS G_CDS: -0.32 Total: 77.14 kcal Total: -87.68 1.08 -86.60 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001649216717.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.450 kcal (2) G-P(sol) polarization free energy of solvation -87.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -155.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.076 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds