Wall clock time and date at job start Tue Mar 31 2020 16:20:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30253 * 125.61514 * 2 1 4 4 C 1.34477 * 108.70000 * 179.77783 * 3 2 1 5 5 C 1.50702 * 126.17049 * 180.26622 * 4 3 2 6 6 C 1.34333 * 107.66841 * 0.38978 * 4 3 2 7 7 C 1.50696 * 126.44680 * 179.87477 * 6 4 3 8 8 O 1.45203 * 109.47037 * 89.71398 * 7 6 4 9 9 C 1.34230 * 117.00479 * 180.02562 * 8 7 6 10 10 O 1.20823 * 119.99459 * 0.02562 * 9 8 7 11 11 C 1.50699 * 120.00327 * 179.97438 * 9 8 7 12 12 C 1.50699 * 109.47151 * 180.02562 * 11 9 8 13 13 C 1.38328 * 119.96224 * 270.02423 * 12 11 9 14 14 C 1.38281 * 120.13505 * 179.97438 * 13 12 11 15 15 C 1.38120 * 120.06679 * 359.68445 * 14 13 12 16 16 C 1.38852 * 119.93490 * 0.58817 * 15 14 13 17 17 O 1.35752 * 120.07221 * 179.70368 * 16 15 14 18 18 C 1.34829 * 116.99954 * 354.17311 * 17 16 15 19 19 H 1.07998 * 119.99999 * 5.03596 * 18 17 16 20 20 C 1.38656 * 119.99670 * 185.03445 * 18 17 16 21 21 N 1.31550 * 120.00275 * 0.02562 * 20 18 17 22 22 Si 1.86802 * 119.99668 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.46814 * 90.00164 * 22 20 18 24 24 H 1.48501 * 109.47378 * 210.00272 * 22 20 18 25 25 H 1.48503 * 109.47143 * 330.00397 * 22 20 18 26 26 C 1.38073 * 119.96539 * 89.99818 * 12 11 9 27 27 O 1.33967 * 125.62121 * 180.02562 * 2 1 3 28 28 H 1.09000 * 109.46965 * 269.97425 * 1 2 3 29 29 H 1.08999 * 109.47572 * 29.98120 * 1 2 3 30 30 H 1.09005 * 109.47101 * 149.98092 * 1 2 3 31 31 H 1.08996 * 109.47261 * 270.14566 * 5 4 3 32 32 H 1.09000 * 109.46916 * 30.14455 * 5 4 3 33 33 H 1.08997 * 109.47186 * 150.14263 * 5 4 3 34 34 H 1.09001 * 109.47454 * 329.71573 * 7 6 4 35 35 H 1.08993 * 109.47450 * 209.71289 * 7 6 4 36 36 H 1.09004 * 109.46756 * 59.99766 * 11 9 8 37 37 H 1.08998 * 109.46908 * 300.00408 * 11 9 8 38 38 H 1.08001 * 119.93314 * 359.97438 * 13 12 11 39 39 H 1.07993 * 119.96315 * 179.97438 * 14 13 12 40 40 H 1.08001 * 120.03256 * 180.31909 * 15 14 13 41 41 H 0.96999 * 119.99936 * 179.97438 * 21 20 18 42 42 H 1.07996 * 120.03547 * 0.04988 * 26 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2655 1.0589 0.0000 4 6 3.5521 0.6676 0.0049 5 6 4.7570 1.5728 0.0123 6 6 3.5698 -0.6756 -0.0007 7 6 4.7937 -1.5548 -0.0008 8 8 5.1867 -1.8374 1.3682 9 6 6.2678 -2.6134 1.5441 10 8 6.8661 -3.0419 0.5859 11 6 6.7359 -2.9491 2.9366 12 6 7.9588 -3.8262 2.8577 13 6 7.8209 -5.2021 2.8210 14 6 8.9406 -6.0103 2.7481 15 6 10.2002 -5.4453 2.7051 16 6 10.3422 -4.0647 2.7475 17 8 11.5792 -3.5066 2.7115 18 6 12.6318 -4.3479 2.7565 19 1 12.4709 -5.4157 2.7361 20 6 13.9208 -3.8422 2.8289 21 7 14.1167 -2.5417 2.8542 22 14 15.3792 -5.0079 2.8919 23 1 15.8381 -5.3015 1.5104 24 1 16.4845 -4.3771 3.6572 25 1 14.9742 -6.2718 3.5581 26 6 9.2155 -3.2556 2.8216 27 8 2.2873 -1.0890 -0.0005 28 1 -0.3633 -0.0005 1.0277 29 1 -0.3634 0.8901 -0.5135 30 1 -0.3633 -0.8899 -0.5142 31 1 5.0506 1.7953 -1.0135 32 1 4.5114 2.5004 0.5294 33 1 5.5805 1.0773 0.5266 34 1 5.6081 -1.0439 -0.5145 35 1 4.5696 -2.4895 -0.5147 36 1 5.9439 -3.4762 3.4689 37 1 6.9819 -2.0302 3.4686 38 1 6.8368 -5.6461 2.8494 39 1 8.8298 -7.0841 2.7200 40 1 11.0741 -6.0768 2.6429 41 1 15.0185 -2.1879 2.9052 42 1 9.3225 -2.1813 2.8507 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001650504367.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:20:14 Heat of formation + Delta-G solvation = -91.111898 kcal Electronic energy + Delta-G solvation = -26544.816077 eV Core-core repulsion = 22456.741640 eV Total energy + Delta-G solvation = -4088.074437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.130 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -44.51928 -41.71663 -40.68322 -38.53135 -37.59443 -36.34326 -34.38770 -34.27642 -33.59092 -31.03908 -30.70586 -30.01620 -28.64071 -27.27532 -25.63960 -23.47662 -23.12406 -22.90047 -21.86198 -21.74392 -19.52271 -18.92206 -18.83313 -18.15401 -17.85260 -17.70664 -16.98524 -16.72002 -16.38438 -16.10840 -15.56462 -15.54060 -15.25385 -15.10180 -14.56689 -14.34080 -14.30789 -14.13257 -13.99249 -13.90298 -13.65007 -13.58394 -13.50307 -12.98706 -12.96293 -12.92973 -12.50295 -12.43639 -12.24717 -12.11171 -12.04839 -12.00382 -11.74524 -11.58751 -11.21353 -10.80611 -9.83106 -9.68168 -9.00375 -8.46746 -6.15162 0.01065 0.45679 0.73383 1.12923 1.27480 1.34884 1.44297 1.49933 1.52498 1.95465 2.17803 2.83561 2.94158 3.16069 3.39392 3.44285 3.64761 3.69842 3.83732 3.90255 4.08341 4.16068 4.29281 4.36844 4.37507 4.54078 4.56388 4.59792 4.61323 4.62799 4.65266 4.72899 4.84671 4.89455 5.01050 5.09797 5.12257 5.20541 5.29842 5.31320 5.61784 5.69671 5.72686 6.02461 6.20415 6.56594 6.65176 6.97860 7.78615 8.76501 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.023826 B = 0.002034 C = 0.001916 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1174.917772 B =13764.214654 C =14612.598338 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 C 0.209 3.791 3 N -0.516 5.516 4 C 0.018 3.982 5 C -0.079 4.079 6 C -0.083 4.083 7 C 0.157 3.843 8 O -0.354 6.354 9 C 0.472 3.528 10 O -0.527 6.527 11 C -0.061 4.061 12 C -0.037 4.037 13 C -0.176 4.176 14 C -0.073 4.073 15 C -0.241 4.241 16 C 0.111 3.889 17 O -0.233 6.233 18 C -0.414 4.414 19 H 0.101 0.899 20 C -0.024 4.024 21 N -0.920 5.920 22 Si 1.019 2.981 23 H -0.265 1.265 24 H -0.270 1.270 25 H -0.252 1.252 26 C -0.187 4.187 27 O -0.206 6.206 28 H 0.114 0.886 29 H 0.115 0.885 30 H 0.110 0.890 31 H 0.091 0.909 32 H 0.085 0.915 33 H 0.082 0.918 34 H 0.114 0.886 35 H 0.094 0.906 36 H 0.154 0.846 37 H 0.135 0.865 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.119 0.881 41 H 0.272 0.728 42 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.752 1.792 -3.152 26.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.003 3.997 3 N -0.247 5.247 4 C -0.102 4.102 5 C -0.136 4.136 6 C -0.135 4.135 7 C 0.083 3.917 8 O -0.272 6.272 9 C 0.316 3.684 10 O -0.415 6.415 11 C -0.098 4.098 12 C -0.038 4.038 13 C -0.195 4.195 14 C -0.091 4.091 15 C -0.260 4.260 16 C 0.061 3.939 17 O -0.140 6.140 18 C -0.490 4.490 19 H 0.118 0.882 20 C -0.221 4.221 21 N -0.559 5.559 22 Si 0.838 3.162 23 H -0.190 1.190 24 H -0.195 1.195 25 H -0.176 1.176 26 C -0.206 4.206 27 O -0.094 6.094 28 H 0.132 0.868 29 H 0.133 0.867 30 H 0.128 0.872 31 H 0.110 0.890 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.132 0.868 35 H 0.112 0.888 36 H 0.172 0.828 37 H 0.152 0.848 38 H 0.168 0.832 39 H 0.165 0.835 40 H 0.137 0.863 41 H 0.081 0.919 42 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -26.607 2.626 -3.475 26.961 hybrid contribution 1.440 -0.870 -0.309 1.711 sum -25.167 1.756 -3.784 25.511 Atomic orbital electron populations 1.20645 0.77491 1.06861 1.06544 1.27465 0.98140 0.77803 0.96340 1.70470 1.01869 1.31225 1.21167 1.22050 0.94273 0.92355 1.01563 1.20324 0.91048 0.98059 1.04211 1.22482 0.83377 0.94366 1.13279 1.21007 0.90271 0.98908 0.81494 1.86560 1.45018 1.64068 1.31507 1.24052 0.76825 0.74294 0.93246 1.90742 1.55545 1.51075 1.44096 1.20401 0.96509 1.02708 0.90162 1.19090 0.91817 0.94316 0.98545 1.21012 0.99317 0.92297 1.06835 1.21141 0.90987 1.00689 0.96298 1.21340 0.99417 0.94002 1.11289 1.19868 0.86415 0.93111 0.94541 1.83937 1.11494 1.36593 1.81929 1.21815 0.83777 0.90374 1.52995 0.88152 1.26595 1.00927 0.98712 0.95901 1.70182 1.23270 1.13576 1.48848 0.84584 0.75358 0.77119 0.79123 1.18967 1.19499 1.17583 1.20244 0.90779 0.98898 1.10729 1.84378 1.16439 1.38333 1.70259 0.86807 0.86691 0.87165 0.89009 0.89643 0.89963 0.86776 0.88791 0.82802 0.84757 0.83218 0.83536 0.86350 0.91861 0.87037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.39 10.51 71.24 0.75 0.36 16 2 C 0.21 3.81 8.34 88.34 0.74 4.54 16 3 N -0.52 -11.71 11.29 -291.98 -3.30 -15.00 16 4 C 0.02 0.39 7.11 41.26 0.29 0.68 16 5 C -0.08 -1.37 10.05 71.24 0.72 -0.66 16 6 C -0.08 -1.86 7.03 24.79 0.17 -1.68 16 7 C 0.16 3.37 5.62 71.23 0.40 3.77 16 8 O -0.35 -8.31 10.20 -51.42 -0.52 -8.83 16 9 C 0.47 12.55 7.95 71.24 0.57 13.12 16 10 O -0.53 -18.22 15.78 21.97 0.35 -17.87 16 11 C -0.06 -1.39 5.94 29.10 0.17 -1.22 16 12 C -0.04 -1.23 4.37 -19.88 -0.09 -1.32 16 13 C -0.18 -5.43 9.70 22.30 0.22 -5.22 16 14 C -0.07 -2.53 10.04 22.25 0.22 -2.31 16 15 C -0.24 -10.71 9.17 22.39 0.21 -10.51 16 16 C 0.11 5.63 6.65 22.58 0.15 5.78 16 17 O -0.23 -14.26 9.76 -22.74 -0.22 -14.49 16 18 C -0.41 -24.45 9.49 67.92 0.64 -23.81 16 19 H 0.10 5.45 5.21 -2.91 -0.02 5.44 16 20 C -0.02 -1.38 5.49 84.83 0.47 -0.92 16 21 N -0.92 -57.07 13.67 21.61 0.30 -56.77 16 22 Si 1.02 43.33 29.55 68.60 2.03 45.36 16 23 H -0.26 -10.75 7.11 99.48 0.71 -10.04 16 24 H -0.27 -11.02 7.11 99.48 0.71 -10.31 16 25 H -0.25 -9.93 7.11 99.48 0.71 -9.22 16 26 C -0.19 -8.05 9.65 22.39 0.22 -7.84 16 27 O -0.21 -4.46 10.78 -3.72 -0.04 -4.50 16 28 H 0.11 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.11 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.11 0.33 8.14 -2.38 -0.02 0.31 16 31 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.36 7.80 -2.39 -0.02 1.34 16 34 H 0.11 2.27 7.80 -2.39 -0.02 2.25 16 35 H 0.09 1.93 8.13 -2.39 -0.02 1.91 16 36 H 0.15 2.28 8.09 -2.38 -0.02 2.26 16 37 H 0.13 2.58 8.08 -2.39 -0.02 2.56 16 38 H 0.15 3.37 8.06 -2.91 -0.02 3.34 16 39 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 40 H 0.12 5.33 5.64 -2.91 -0.02 5.31 16 41 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 42 H 0.11 4.74 8.06 -2.91 -0.02 4.72 16 Total: -1.00 -82.77 373.39 5.48 -77.29 By element: Atomic # 1 Polarization: 20.98 SS G_CDS: 1.06 Total: 22.03 kcal Atomic # 6 Polarization: -33.05 SS G_CDS: 5.84 Total: -27.21 kcal Atomic # 7 Polarization: -68.77 SS G_CDS: -3.00 Total: -71.78 kcal Atomic # 8 Polarization: -45.25 SS G_CDS: -0.44 Total: -45.69 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Total: -82.77 5.48 -77.29 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001650504367.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.826 kcal (2) G-P(sol) polarization free energy of solvation -82.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds