Wall clock time and date at job start Tue Mar 31 2020 16:33:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47043 * 2 1 4 4 N 1.46493 * 109.47332 * 239.99756 * 2 1 3 5 5 C 1.34779 * 120.00319 * 57.60435 * 4 2 1 6 6 O 1.21594 * 119.99613 * 359.97438 * 5 4 2 7 7 C 1.47636 * 120.00492 * 180.02562 * 5 4 2 8 8 C 1.40017 * 119.89312 * 359.72860 * 7 5 4 9 9 C 1.36316 * 120.10474 * 179.72206 * 8 7 5 10 10 C 1.40886 * 119.89322 * 0.56855 * 9 8 7 11 11 C 1.41112 * 120.10554 * 179.67712 * 10 9 8 12 12 H 1.07992 * 119.99969 * 209.94273 * 11 10 9 13 13 C 1.40232 * 119.99648 * 29.94474 * 11 10 9 14 14 N 1.30647 * 120.00213 * 9.80749 * 13 11 10 15 15 Si 1.86800 * 119.99680 * 189.80850 * 13 11 10 16 16 H 1.48502 * 109.47102 * 0.02562 * 15 13 11 17 17 H 1.48504 * 109.46969 * 119.99970 * 15 13 11 18 18 H 1.48500 * 109.46944 * 239.99716 * 15 13 11 19 19 C 1.40885 * 119.79278 * 359.70354 * 10 9 8 20 20 C 1.36322 * 119.89142 * 359.97438 * 19 10 9 21 21 C 1.53004 * 109.46557 * 119.99762 * 2 1 3 22 22 H 1.09001 * 109.46893 * 176.34912 * 21 2 1 23 23 O 1.42900 * 109.47362 * 296.34494 * 21 2 1 24 24 C 1.53000 * 109.47114 * 56.34932 * 21 2 1 25 25 F 1.39897 * 109.46828 * 294.25471 * 24 21 2 26 26 F 1.39901 * 109.47197 * 54.25385 * 24 21 2 27 27 F 1.39903 * 109.46722 * 174.25470 * 24 21 2 28 28 H 1.09001 * 109.47632 * 290.19822 * 1 2 3 29 29 H 1.09010 * 109.46534 * 50.19467 * 1 2 3 30 30 H 1.08996 * 109.47230 * 170.18837 * 1 2 3 31 31 H 1.09005 * 109.46990 * 176.27832 * 3 2 1 32 32 H 1.09001 * 109.47322 * 296.27440 * 3 2 1 33 33 H 1.09004 * 109.47441 * 56.28091 * 3 2 1 34 34 H 0.97002 * 119.99795 * 237.60392 * 4 2 1 35 35 H 1.08001 * 119.94579 * 359.97438 * 8 7 5 36 36 H 1.08003 * 120.05475 * 180.25294 * 9 8 7 37 37 H 0.96991 * 120.00092 * 180.02562 * 14 13 11 38 38 H 1.08002 * 120.05665 * 179.97438 * 19 10 9 39 39 H 1.07999 * 119.94795 * 179.97438 * 20 19 10 40 40 H 0.96703 * 113.99888 * 60.00024 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 1.6535 -0.2591 -2.4197 6 8 0.9185 0.7032 -2.5307 7 6 2.1452 -0.9554 -3.6251 8 6 2.9951 -2.0605 -3.4947 9 6 3.4471 -2.7101 -4.6046 10 6 3.0674 -2.2606 -5.8847 11 6 3.5381 -2.9256 -7.0369 12 1 3.6806 -2.3774 -7.9564 13 6 3.8209 -4.2982 -6.9878 14 7 3.4714 -5.0002 -5.9429 15 14 4.6973 -5.1229 -8.4165 16 1 4.9833 -4.1157 -9.4696 17 1 5.9727 -5.7153 -7.9394 18 1 3.8331 -6.1931 -8.9760 19 6 2.2166 -1.1448 -6.0110 20 6 1.7643 -0.5056 -4.8950 21 6 2.0399 -0.7212 1.2493 22 1 3.1279 -0.7783 1.2173 23 8 1.6349 0.0002 2.4145 24 6 1.4562 -2.1348 1.2961 25 9 0.0699 -2.0613 1.4690 26 9 1.7422 -2.7973 0.0976 27 9 2.0228 -2.8381 2.3645 28 1 -0.3634 0.3548 0.9644 29 1 -0.3633 0.6580 -0.7896 30 1 -0.3633 -1.0126 -0.1751 31 1 3.1280 1.4432 0.0667 32 1 1.7322 1.9367 -0.9215 33 1 1.6232 1.9753 0.8548 34 1 2.6044 -1.4585 -1.1074 35 1 3.2897 -2.4012 -2.5131 36 1 4.0994 -3.5649 -4.5030 37 1 3.6673 -5.9495 -5.9088 38 1 1.9231 -0.7963 -6.9902 39 1 1.1124 0.3501 -4.9907 40 1 0.6766 0.0902 2.5081 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772098726.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:31 Heat of formation + Delta-G solvation = -234.689163 kcal Electronic energy + Delta-G solvation = -29496.774930 eV Core-core repulsion = 24860.617776 eV Total energy + Delta-G solvation = -4636.157154 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -51.31122 -48.81576 -48.75246 -41.32435 -39.59498 -38.62211 -36.12851 -35.61809 -33.08120 -31.37581 -31.24866 -30.08741 -28.40623 -27.64679 -25.02179 -23.88206 -22.85207 -21.91285 -20.75644 -19.88250 -19.71462 -19.36574 -19.30514 -18.80638 -17.38727 -17.20169 -16.47248 -16.02406 -15.93609 -15.74504 -15.67682 -15.49549 -15.28400 -15.16208 -15.03557 -14.91565 -14.81657 -14.56868 -14.33066 -14.21862 -13.92504 -13.68579 -13.40875 -13.21958 -13.06310 -12.90385 -12.84117 -12.58788 -12.53980 -12.35791 -12.10238 -11.71901 -11.53586 -11.35906 -11.17610 -10.47444 -10.13081 -9.56963 -9.34252 -8.72385 -6.49557 0.43482 1.14410 1.39721 1.41714 1.50923 1.55161 2.07528 2.14451 2.19705 2.54715 2.59031 2.81679 2.84708 3.20013 3.43820 3.66590 3.72530 3.99314 4.16444 4.29158 4.30304 4.45444 4.59056 4.75461 4.79313 4.85546 4.93113 5.05084 5.14741 5.26913 5.31070 5.32825 5.56031 5.60996 5.80854 5.94330 6.00723 6.20733 6.24585 6.55981 6.64616 6.79651 6.89167 7.43902 8.22474 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.018722 B = 0.003273 C = 0.002921 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1495.234014 B = 8552.284485 C = 9582.332533 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.143 3.857 3 C -0.147 4.147 4 N -0.725 5.725 5 C 0.582 3.418 6 O -0.583 6.583 7 C -0.285 4.285 8 C -0.058 4.058 9 C -0.189 4.189 10 C 0.102 3.898 11 C -0.479 4.479 12 H 0.084 0.916 13 C 0.035 3.965 14 N -0.812 5.812 15 Si 0.989 3.011 16 H -0.257 1.257 17 H -0.261 1.261 18 H -0.266 1.266 19 C -0.247 4.247 20 C -0.034 4.034 21 C 0.088 3.912 22 H 0.164 0.836 23 O -0.516 6.516 24 C 0.417 3.583 25 F -0.178 7.178 26 F -0.182 7.182 27 F -0.179 7.179 28 H 0.095 0.905 29 H 0.066 0.934 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.057 0.943 33 H 0.092 0.908 34 H 0.405 0.595 35 H 0.119 0.881 36 H 0.112 0.888 37 H 0.294 0.706 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.818 3.761 15.140 15.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.057 3.943 3 C -0.205 4.205 4 N -0.382 5.382 5 C 0.375 3.625 6 O -0.465 6.465 7 C -0.289 4.289 8 C -0.077 4.077 9 C -0.209 4.209 10 C 0.099 3.901 11 C -0.507 4.507 12 H 0.102 0.898 13 C -0.182 4.182 14 N -0.436 5.436 15 Si 0.809 3.191 16 H -0.180 1.180 17 H -0.186 1.186 18 H -0.191 1.191 19 C -0.266 4.266 20 C -0.053 4.053 21 C 0.026 3.974 22 H 0.181 0.819 23 O -0.324 6.324 24 C 0.362 3.638 25 F -0.160 7.160 26 F -0.164 7.164 27 F -0.160 7.160 28 H 0.114 0.886 29 H 0.085 0.915 30 H 0.075 0.925 31 H 0.084 0.916 32 H 0.076 0.924 33 H 0.110 0.890 34 H 0.245 0.755 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.105 0.895 38 H 0.123 0.877 39 H 0.125 0.875 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -0.731 4.196 15.326 15.907 hybrid contribution -0.311 -1.306 -0.912 1.623 sum -1.043 2.890 14.414 14.738 Atomic orbital electron populations 1.22546 0.93359 1.03286 1.04241 1.21003 0.95723 0.94404 0.83219 1.22039 1.01672 0.93150 1.03653 1.46087 1.52800 1.34791 1.04502 1.18160 0.78699 0.82312 0.83289 1.90583 1.39106 1.29489 1.87372 1.19263 1.12814 1.04187 0.92625 1.20734 0.95382 0.93616 0.97923 1.21040 1.05007 1.02557 0.92264 1.18157 0.87554 0.90344 0.94033 1.20100 1.38291 0.94508 0.97830 0.89825 1.26884 0.93482 0.97815 1.00011 1.69747 1.34134 1.09607 1.30143 0.85047 0.78346 0.78233 0.77486 1.18037 1.18567 1.19081 1.20928 1.05511 1.02850 0.97357 1.20526 0.96073 0.96855 0.91871 1.23306 1.03263 0.83452 0.87417 0.81906 1.86718 1.31046 1.74491 1.40140 1.21897 0.76848 0.91503 0.73505 1.93158 1.31334 1.96514 1.94980 1.93140 1.93143 1.83320 1.46779 1.93213 1.84602 1.81502 1.56701 0.88616 0.91495 0.92489 0.91588 0.92435 0.88967 0.75523 0.86367 0.86983 0.89523 0.87744 0.87470 0.74791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.13 6.79 71.98 0.49 -3.64 16 2 C 0.14 3.24 0.58 3.61 0.00 3.24 16 3 C -0.15 -3.26 8.22 71.98 0.59 -2.66 16 4 N -0.72 -21.35 4.24 -425.94 -1.81 -23.16 16 5 C 0.58 22.53 7.17 86.72 0.62 23.15 16 6 O -0.58 -24.54 12.64 -4.01 -0.05 -24.59 16 7 C -0.28 -12.52 5.89 -19.94 -0.12 -12.63 16 8 C -0.06 -2.50 9.47 22.25 0.21 -2.29 16 9 C -0.19 -9.35 8.59 22.47 0.19 -9.15 16 10 C 0.10 5.29 5.54 -21.28 -0.12 5.17 16 11 C -0.48 -24.33 9.05 23.46 0.21 -24.11 16 12 H 0.08 4.08 7.87 -2.91 -0.02 4.06 16 13 C 0.04 1.65 5.26 85.35 0.45 2.10 16 14 N -0.81 -39.53 10.86 21.87 0.24 -39.29 16 15 Si 0.99 35.43 29.57 68.60 2.03 37.46 16 16 H -0.26 -9.05 7.11 99.48 0.71 -8.34 16 17 H -0.26 -8.93 7.11 99.48 0.71 -8.22 16 18 H -0.27 -9.23 7.11 99.48 0.71 -8.52 16 19 C -0.25 -12.07 9.73 22.47 0.22 -11.85 16 20 C -0.03 -1.58 9.52 22.25 0.21 -1.37 16 21 C 0.09 1.51 2.59 30.60 0.08 1.59 16 22 H 0.16 2.29 8.14 -2.39 -0.02 2.28 16 23 O -0.52 -7.18 12.56 -148.98 -1.87 -9.05 16 24 C 0.42 8.58 2.68 71.98 0.19 8.78 16 25 F -0.18 -3.69 13.57 44.97 0.61 -3.08 16 26 F -0.18 -4.61 14.31 44.97 0.64 -3.97 16 27 F -0.18 -3.77 17.31 44.97 0.78 -2.99 16 28 H 0.10 1.46 6.41 -2.39 -0.02 1.44 16 29 H 0.07 1.98 6.33 -2.38 -0.02 1.97 16 30 H 0.06 1.48 6.23 -2.39 -0.01 1.46 16 31 H 0.07 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.06 1.67 6.25 -2.39 -0.01 1.65 16 33 H 0.09 1.57 7.71 -2.38 -0.02 1.55 16 34 H 0.40 11.11 4.51 -92.71 -0.42 10.69 16 35 H 0.12 4.28 6.37 -2.91 -0.02 4.26 16 36 H 0.11 5.68 6.26 -2.91 -0.02 5.66 16 37 H 0.29 12.78 8.29 -92.72 -0.77 12.02 16 38 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.11 4.77 7.63 -2.91 -0.02 4.75 16 40 H 0.40 3.40 6.77 -74.06 -0.50 2.90 16 Total: -1.00 -60.65 332.46 4.02 -56.63 By element: Atomic # 1 Polarization: 35.51 SS G_CDS: 0.21 Total: 35.72 kcal Atomic # 6 Polarization: -26.92 SS G_CDS: 3.24 Total: -23.68 kcal Atomic # 7 Polarization: -60.88 SS G_CDS: -1.57 Total: -62.45 kcal Atomic # 8 Polarization: -31.72 SS G_CDS: -1.92 Total: -33.64 kcal Atomic # 9 Polarization: -12.07 SS G_CDS: 2.03 Total: -10.04 kcal Atomic # 14 Polarization: 35.43 SS G_CDS: 2.03 Total: 37.46 kcal Total: -60.65 4.02 -56.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772098726.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.058 kcal (2) G-P(sol) polarization free energy of solvation -60.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.631 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds