Wall clock time and date at job start Tue Mar 31 2020 16:33:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.46891 * 2 1 4 4 N 1.46499 * 109.46871 * 119.99773 * 2 1 3 5 5 C 1.34775 * 120.00112 * 300.00323 * 4 2 1 6 6 O 1.21589 * 120.00060 * 359.97438 * 5 4 2 7 7 C 1.47645 * 120.00060 * 180.27291 * 5 4 2 8 8 C 1.40011 * 119.89418 * 359.45173 * 7 5 4 9 9 C 1.36320 * 120.10788 * 179.71366 * 8 7 5 10 10 C 1.40879 * 119.88918 * 0.57971 * 9 8 7 11 11 C 1.41110 * 120.10619 * 179.67697 * 10 9 8 12 12 H 1.08001 * 119.99999 * 208.84434 * 11 10 9 13 13 C 1.40227 * 120.00060 * 28.83826 * 11 10 9 14 14 N 1.30645 * 119.99939 * 9.80048 * 13 11 10 15 15 Si 1.86798 * 120.00226 * 189.80433 * 13 11 10 16 16 H 1.48493 * 109.47498 * 59.99710 * 15 13 11 17 17 H 1.48498 * 109.47389 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46786 * 299.99773 * 15 13 11 19 19 C 1.40891 * 119.79489 * 359.69385 * 10 9 8 20 20 C 1.36317 * 119.88894 * 0.02562 * 19 10 9 21 21 C 1.52998 * 109.47079 * 239.99746 * 2 1 3 22 22 H 1.09001 * 109.46932 * 185.15284 * 21 2 1 23 23 O 1.42906 * 109.47052 * 65.15400 * 21 2 1 24 24 C 1.53004 * 109.47345 * 305.15426 * 21 2 1 25 25 F 1.39896 * 109.47187 * 65.40768 * 24 21 2 26 26 F 1.39895 * 109.47054 * 185.41322 * 24 21 2 27 27 F 1.39901 * 109.46848 * 305.40966 * 24 21 2 28 28 H 1.08997 * 109.47120 * 308.57546 * 1 2 3 29 29 H 1.09002 * 109.47290 * 68.57609 * 1 2 3 30 30 H 1.08994 * 109.47256 * 188.57268 * 1 2 3 31 31 H 1.09003 * 109.46728 * 179.97438 * 3 2 1 32 32 H 1.08999 * 109.47623 * 299.99377 * 3 2 1 33 33 H 1.08993 * 109.47212 * 60.00396 * 3 2 1 34 34 H 0.96999 * 120.00222 * 119.99794 * 4 2 1 35 35 H 1.08009 * 119.94830 * 359.97438 * 8 7 5 36 36 H 1.07997 * 120.05581 * 180.26930 * 9 8 7 37 37 H 0.96998 * 120.00465 * 179.97438 * 14 13 11 38 38 H 1.08001 * 120.05488 * 179.97438 * 19 10 9 39 39 H 1.08001 * 119.94397 * 180.02562 * 20 19 10 40 40 H 0.96700 * 113.99861 * 299.99383 * 23 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6926 -0.2301 2.4203 6 8 0.9940 0.7587 2.5318 7 6 2.1897 -0.9226 3.6258 8 6 2.9898 -2.0641 3.4949 9 6 3.4559 -2.7034 4.6050 10 6 3.1212 -2.2209 5.8855 11 6 3.5956 -2.8831 7.0378 12 1 3.0241 -2.8498 7.9536 13 6 4.8090 -3.5846 6.9937 14 7 5.5925 -3.4698 5.9546 15 14 5.3050 -4.6835 8.4206 16 1 4.2835 -5.7451 8.6063 17 1 6.6210 -5.3074 8.1307 18 1 5.4052 -3.8708 9.6595 19 6 2.3111 -1.0752 6.0123 20 6 1.8545 -0.4393 4.8963 21 6 2.0400 -0.7213 -1.2492 22 1 3.1261 -0.8019 -1.2042 23 8 1.6650 0.0186 -2.4129 24 6 1.4270 -2.1216 -1.3157 25 9 0.0438 -2.0169 -1.4973 26 9 1.9863 -2.8251 -2.3877 27 9 1.6903 -2.8030 -0.1225 28 1 -0.3633 0.6408 0.8034 29 1 -0.3634 0.3754 -0.9567 30 1 -0.3633 -1.0161 0.1532 31 1 3.1300 1.4425 0.0005 32 1 1.6767 1.9564 -0.8900 33 1 1.6767 1.9563 0.8900 34 1 2.5759 -1.4793 1.1073 35 1 3.2415 -2.4363 2.5127 36 1 4.0765 -3.5813 4.5030 37 1 6.4321 -3.9547 5.9242 38 1 2.0516 -0.7019 6.9919 39 1 1.2337 0.4393 4.9924 40 1 0.7102 0.1297 -2.5175 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001772098729.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:33:37 Heat of formation + Delta-G solvation = -234.777688 kcal Electronic energy + Delta-G solvation = -29456.655671 eV Core-core repulsion = 24820.494678 eV Total energy + Delta-G solvation = -4636.160993 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.118 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -51.31604 -48.81448 -48.75355 -41.32144 -39.59225 -38.62211 -36.13009 -35.62370 -33.08148 -31.37045 -31.24377 -30.08901 -28.40209 -27.64644 -25.02445 -23.87968 -22.84801 -21.90972 -20.75059 -19.88253 -19.71717 -19.36804 -19.30766 -18.79971 -17.39149 -17.20171 -16.47820 -16.02093 -15.92946 -15.73979 -15.67761 -15.49365 -15.29191 -15.15906 -15.03535 -14.91741 -14.82117 -14.56464 -14.33901 -14.21634 -13.91914 -13.66419 -13.44418 -13.18489 -13.05836 -12.91517 -12.82217 -12.58227 -12.53689 -12.35276 -12.10237 -11.75113 -11.53094 -11.35483 -11.15663 -10.47363 -10.13283 -9.56739 -9.34866 -8.71839 -6.49387 0.44261 1.15043 1.39929 1.44713 1.50524 1.51896 2.08156 2.14190 2.19749 2.54017 2.59105 2.82115 2.84767 3.20026 3.43683 3.67419 3.72886 3.99305 4.16625 4.28849 4.30546 4.45832 4.59763 4.75111 4.79607 4.85494 4.93446 5.04588 5.15405 5.26656 5.31354 5.33660 5.56006 5.60884 5.81404 5.95353 6.00706 6.21543 6.24653 6.56064 6.64703 6.79602 6.89541 7.44121 8.21836 Molecular weight = 331.12amu Principal moments of inertia in cm(-1) A = 0.019036 B = 0.003196 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.537911 B = 8759.935311 C = 9641.291076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.143 3.857 3 C -0.149 4.149 4 N -0.725 5.725 5 C 0.582 3.418 6 O -0.583 6.583 7 C -0.286 4.286 8 C -0.058 4.058 9 C -0.191 4.191 10 C 0.101 3.899 11 C -0.479 4.479 12 H 0.084 0.916 13 C 0.036 3.964 14 N -0.809 5.809 15 Si 0.988 3.012 16 H -0.259 1.259 17 H -0.265 1.265 18 H -0.260 1.260 19 C -0.248 4.248 20 C -0.034 4.034 21 C 0.087 3.913 22 H 0.161 0.839 23 O -0.517 6.517 24 C 0.419 3.581 25 F -0.177 7.177 26 F -0.179 7.179 27 F -0.182 7.182 28 H 0.064 0.936 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.093 0.907 33 H 0.059 0.941 34 H 0.405 0.595 35 H 0.118 0.882 36 H 0.114 0.886 37 H 0.294 0.706 38 H 0.104 0.896 39 H 0.107 0.893 40 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.756 1.533 -15.121 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.057 3.943 3 C -0.207 4.207 4 N -0.382 5.382 5 C 0.375 3.625 6 O -0.466 6.466 7 C -0.290 4.290 8 C -0.077 4.077 9 C -0.211 4.211 10 C 0.098 3.902 11 C -0.507 4.507 12 H 0.102 0.898 13 C -0.182 4.182 14 N -0.433 5.433 15 Si 0.808 3.192 16 H -0.183 1.183 17 H -0.189 1.189 18 H -0.184 1.184 19 C -0.268 4.268 20 C -0.053 4.053 21 C 0.025 3.975 22 H 0.178 0.822 23 O -0.324 6.324 24 C 0.364 3.636 25 F -0.158 7.158 26 F -0.160 7.160 27 F -0.163 7.163 28 H 0.083 0.917 29 H 0.114 0.886 30 H 0.079 0.921 31 H 0.079 0.921 32 H 0.112 0.888 33 H 0.078 0.922 34 H 0.244 0.756 35 H 0.136 0.864 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.122 0.878 39 H 0.125 0.875 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -3.398 2.145 -15.302 15.821 hybrid contribution -0.161 -1.145 0.915 1.475 sum -3.559 1.000 -14.387 14.855 Atomic orbital electron populations 1.22562 0.93220 1.03384 1.04258 1.20995 0.95762 0.94335 0.83227 1.22057 1.01422 0.93369 1.03861 1.46074 1.54972 1.32655 1.04475 1.18164 0.78364 0.82638 0.83287 1.90579 1.40692 1.27919 1.87374 1.19256 1.13474 1.03712 0.92600 1.20736 0.95048 0.93943 0.97935 1.21079 1.05376 1.02450 0.92147 1.18150 0.88579 0.89429 0.94011 1.20071 1.05110 1.27468 0.98041 0.89817 1.26878 0.95299 0.95985 1.00022 1.69730 1.09820 1.33588 1.30192 0.85142 0.78340 0.78131 0.77539 1.18274 1.18919 1.18418 1.20918 1.09194 0.99332 0.97323 1.20518 0.95673 0.97227 0.91873 1.23284 1.03148 0.83694 0.87414 0.82164 1.86723 1.31576 1.73586 1.40526 1.21834 0.77162 0.91045 0.73554 1.93158 1.31596 1.96214 1.94865 1.93212 1.84899 1.81419 1.56469 1.93139 1.93601 1.82436 1.47158 0.91722 0.88575 0.92122 0.92058 0.88836 0.92187 0.75568 0.86405 0.86770 0.89450 0.87760 0.87501 0.74763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.03 6.84 71.98 0.49 -3.54 16 2 C 0.14 3.27 0.58 3.60 0.00 3.27 16 3 C -0.15 -3.42 8.19 71.98 0.59 -2.83 16 4 N -0.72 -21.45 4.31 -425.94 -1.83 -23.29 16 5 C 0.58 22.59 7.18 86.73 0.62 23.21 16 6 O -0.58 -24.60 12.63 -3.99 -0.05 -24.65 16 7 C -0.29 -12.61 5.89 -19.93 -0.12 -12.73 16 8 C -0.06 -2.51 9.47 22.25 0.21 -2.30 16 9 C -0.19 -9.44 8.60 22.47 0.19 -9.25 16 10 C 0.10 5.25 5.56 -21.28 -0.12 5.13 16 11 C -0.48 -24.28 9.06 23.46 0.21 -24.07 16 12 H 0.08 4.06 7.87 -2.91 -0.02 4.03 16 13 C 0.04 1.66 5.27 85.35 0.45 2.11 16 14 N -0.81 -38.99 10.78 21.87 0.24 -38.75 16 15 Si 0.99 35.24 29.57 68.60 2.03 37.27 16 16 H -0.26 -9.03 7.11 99.48 0.71 -8.32 16 17 H -0.27 -8.89 7.11 99.48 0.71 -8.19 16 18 H -0.26 -9.08 7.11 99.48 0.71 -8.37 16 19 C -0.25 -12.14 9.73 22.47 0.22 -11.92 16 20 C -0.03 -1.57 9.52 22.25 0.21 -1.36 16 21 C 0.09 1.50 2.60 30.59 0.08 1.58 16 22 H 0.16 2.37 8.14 -2.39 -0.02 2.35 16 23 O -0.52 -7.22 12.44 -148.98 -1.85 -9.07 16 24 C 0.42 8.36 2.65 71.98 0.19 8.55 16 25 F -0.18 -3.48 13.49 44.97 0.61 -2.88 16 26 F -0.18 -3.68 17.31 44.97 0.78 -2.90 16 27 F -0.18 -4.40 14.40 44.97 0.65 -3.76 16 28 H 0.06 1.88 6.43 -2.39 -0.02 1.87 16 29 H 0.10 1.43 6.49 -2.39 -0.02 1.42 16 30 H 0.06 1.50 6.14 -2.39 -0.01 1.49 16 31 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 32 H 0.09 1.63 7.56 -2.39 -0.02 1.62 16 33 H 0.06 1.79 6.16 -2.39 -0.01 1.77 16 34 H 0.40 11.16 4.52 -92.71 -0.42 10.74 16 35 H 0.12 4.28 6.37 -2.91 -0.02 4.26 16 36 H 0.11 5.79 6.17 -2.91 -0.02 5.77 16 37 H 0.29 12.72 8.29 -92.71 -0.77 11.95 16 38 H 0.10 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.11 4.77 7.63 -2.91 -0.02 4.74 16 40 H 0.40 3.30 6.87 -74.06 -0.51 2.80 16 Total: -1.00 -60.10 332.23 4.00 -56.10 By element: Atomic # 1 Polarization: 35.84 SS G_CDS: 0.20 Total: 36.04 kcal Atomic # 6 Polarization: -27.36 SS G_CDS: 3.24 Total: -24.13 kcal Atomic # 7 Polarization: -60.44 SS G_CDS: -1.60 Total: -62.04 kcal Atomic # 8 Polarization: -31.82 SS G_CDS: -1.90 Total: -33.72 kcal Atomic # 9 Polarization: -11.57 SS G_CDS: 2.03 Total: -9.53 kcal Atomic # 14 Polarization: 35.24 SS G_CDS: 2.03 Total: 37.27 kcal Total: -60.10 4.00 -56.10 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001772098729.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -178.673 kcal (2) G-P(sol) polarization free energy of solvation -60.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -238.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.000 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -234.778 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds