Wall clock time and date at job start Tue Mar 31 2020 16:43:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34227 * 117.00191 * 2 1 4 4 O 1.20816 * 119.99996 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99942 * 179.97438 * 3 2 1 6 6 H 1.09001 * 109.47146 * 59.99389 * 5 3 2 7 7 C 1.53003 * 109.46591 * 299.99729 * 5 3 2 8 8 C 1.52995 * 109.47418 * 299.99469 * 7 5 3 9 9 C 1.52995 * 109.47576 * 300.00945 * 8 7 5 10 10 C 1.52998 * 109.47191 * 59.99502 * 9 8 7 11 11 C 1.52994 * 109.47121 * 179.97438 * 5 3 2 12 12 H 1.09001 * 109.47265 * 179.97438 * 11 5 3 13 13 S 1.81400 * 109.46858 * 299.99746 * 11 5 3 14 14 O 1.42093 * 110.54379 * 291.62300 * 13 11 5 15 15 O 1.42104 * 110.54528 * 68.37696 * 13 11 5 16 16 N 1.65600 * 104.44915 * 180.02562 * 13 11 5 17 17 C 1.36941 * 119.99979 * 90.00047 * 16 13 11 18 18 H 1.07997 * 119.99729 * 307.82427 * 17 16 13 19 19 C 1.38811 * 120.00061 * 127.82924 * 17 16 13 20 20 N 1.31619 * 119.99705 * 347.61549 * 19 17 16 21 21 Si 1.86790 * 120.00274 * 167.62587 * 19 17 16 22 22 H 1.48502 * 109.47536 * 89.99215 * 21 19 17 23 23 H 1.48500 * 109.47425 * 209.99635 * 21 19 17 24 24 H 1.48508 * 109.47228 * 329.99646 * 21 19 17 25 25 C 1.46499 * 120.00279 * 270.00193 * 16 13 11 26 26 C 1.53000 * 117.50255 * 181.99640 * 25 16 13 27 27 C 1.53002 * 117.50226 * 113.33072 * 25 16 13 28 28 H 1.09005 * 109.46649 * 300.00456 * 1 2 3 29 29 H 1.08996 * 109.47001 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.46568 * 60.00306 * 1 2 3 31 31 H 1.08996 * 109.47423 * 60.00551 * 7 5 3 32 32 H 1.09006 * 109.46395 * 179.97438 * 7 5 3 33 33 H 1.09006 * 109.46947 * 60.00817 * 8 7 5 34 34 H 1.09004 * 109.47273 * 179.97438 * 8 7 5 35 35 H 1.09001 * 109.47439 * 180.02562 * 9 8 7 36 36 H 1.09001 * 109.46967 * 299.99462 * 9 8 7 37 37 H 1.08996 * 109.47364 * 60.00562 * 10 9 8 38 38 H 1.09006 * 109.47209 * 180.02562 * 10 9 8 39 39 H 0.97006 * 119.99662 * 175.36471 * 20 19 17 40 40 H 1.09004 * 115.54796 * 327.66310 * 25 16 13 41 41 H 1.09003 * 117.49704 * 359.97438 * 26 25 16 42 42 H 1.08998 * 117.50347 * 145.01929 * 26 25 16 43 43 H 1.08995 * 117.50067 * 214.97974 * 27 25 16 44 44 H 1.09000 * 117.49516 * 359.97438 * 27 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4035 2.2092 -0.0005 5 6 3.5665 1.2748 0.0006 6 1 3.9566 0.7803 -0.8891 7 6 4.1129 0.5814 1.2503 8 6 3.5655 1.2754 2.4991 9 6 3.9992 2.7425 2.4989 10 6 3.4527 3.4358 1.2493 11 6 4.0003 2.7419 -0.0002 12 1 5.0889 2.7989 0.0007 13 16 3.3524 3.5632 -1.4822 14 8 3.9925 3.0645 -2.6487 15 8 1.9373 3.6729 -1.4131 16 7 3.8902 5.1245 -1.3578 17 6 5.0975 5.4779 -1.8989 18 1 5.9848 4.9124 -1.6552 19 6 5.1810 6.5631 -2.7605 20 7 4.0838 7.1005 -3.2501 21 14 6.8503 7.2605 -3.2252 22 1 7.3531 6.5727 -4.4415 23 1 6.7211 8.7148 -3.4966 24 1 7.8042 7.0486 -2.1068 25 6 3.0745 6.1276 -0.6690 26 6 3.6044 7.5623 -0.6282 27 6 3.6194 6.7041 0.6393 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3632 0.5138 -0.8900 31 1 3.8039 -0.4638 1.2504 32 1 5.2015 0.6381 1.2504 33 1 2.4769 1.2184 2.4987 34 1 3.9544 0.7811 3.3894 35 1 3.6096 3.2368 3.3889 36 1 5.0878 2.7996 2.4994 37 1 2.3643 3.3789 1.2488 38 1 3.7622 4.4810 1.2489 39 1 4.1377 7.8993 -3.7978 40 1 1.9959 5.9915 -0.7484 41 1 4.5602 7.7598 -1.1136 42 1 2.8745 8.3702 -0.6803 43 1 2.8993 6.9477 1.4204 44 1 4.5846 6.3367 0.9877 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331927583.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:43:16 Heat of formation + Delta-G solvation = -133.033119 kcal Electronic energy + Delta-G solvation = -29570.348858 eV Core-core repulsion = 25615.900532 eV Total energy + Delta-G solvation = -3954.448326 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -42.05189 -39.13057 -38.78978 -37.73718 -37.22694 -36.43390 -34.53598 -32.81210 -32.43521 -31.91558 -28.66718 -26.65362 -25.03033 -24.01631 -22.94633 -22.38906 -22.37631 -20.79444 -20.11931 -18.79169 -18.38382 -18.37602 -17.85275 -17.46978 -16.89783 -16.66278 -16.23019 -15.94082 -15.53289 -15.16955 -15.04199 -14.83902 -14.47531 -14.17747 -13.97131 -13.66368 -13.51964 -13.37226 -13.21893 -13.09776 -12.95372 -12.74832 -12.63589 -12.59278 -12.44168 -12.36118 -12.11066 -12.03546 -11.95716 -11.87509 -11.54486 -11.45716 -11.15382 -10.95560 -10.82795 -10.72743 -10.31959 -9.19541 -8.11945 -6.05867 -0.30841 1.13152 1.46543 1.48814 1.58293 1.64237 2.18899 2.53319 3.03420 3.12519 3.29686 3.37944 3.54284 3.75841 3.77678 3.98927 4.14315 4.21753 4.29326 4.32498 4.32669 4.38223 4.40390 4.43277 4.53502 4.59232 4.66859 4.78244 4.89270 4.93049 5.02053 5.03105 5.16782 5.20004 5.25999 5.30722 5.34964 5.37802 5.53019 5.57254 5.73018 5.95634 6.54360 6.69664 7.14368 7.55548 8.89804 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.018343 B = 0.005077 C = 0.004890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.074596 B = 5513.397812 C = 5725.059829 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.357 6.357 3 C 0.416 3.584 4 O -0.471 6.471 5 C -0.073 4.073 6 H 0.120 0.880 7 C -0.094 4.094 8 C -0.123 4.123 9 C -0.107 4.107 10 C -0.118 4.118 11 C -0.550 4.550 12 H 0.161 0.839 13 S 2.545 3.455 14 O -1.019 7.019 15 O -0.989 6.989 16 N -0.825 5.825 17 C -0.317 4.317 18 H 0.086 0.914 19 C 0.011 3.989 20 N -0.882 5.882 21 Si 0.963 3.037 22 H -0.283 1.283 23 H -0.278 1.278 24 H -0.249 1.249 25 C 0.092 3.908 26 C -0.148 4.148 27 C -0.184 4.184 28 H 0.065 0.935 29 H 0.140 0.860 30 H 0.047 0.953 31 H 0.097 0.903 32 H 0.105 0.895 33 H 0.044 0.956 34 H 0.099 0.901 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.075 0.925 38 H 0.086 0.914 39 H 0.265 0.735 40 H 0.087 0.913 41 H 0.093 0.907 42 H 0.077 0.923 43 H 0.106 0.894 44 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.526 -11.455 14.555 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C 0.257 3.743 4 O -0.357 6.357 5 C -0.093 4.093 6 H 0.138 0.862 7 C -0.132 4.132 8 C -0.161 4.161 9 C -0.145 4.145 10 C -0.156 4.156 11 C -0.661 4.661 12 H 0.179 0.821 13 S 2.651 3.349 14 O -1.009 7.009 15 O -0.979 6.979 16 N -0.653 5.653 17 C -0.452 4.452 18 H 0.104 0.896 19 C -0.196 4.196 20 N -0.519 5.519 21 Si 0.787 3.213 22 H -0.209 1.209 23 H -0.203 1.203 24 H -0.172 1.172 25 C -0.017 4.017 26 C -0.187 4.187 27 C -0.224 4.224 28 H 0.084 0.916 29 H 0.158 0.842 30 H 0.066 0.934 31 H 0.116 0.884 32 H 0.123 0.877 33 H 0.063 0.937 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.094 0.906 38 H 0.104 0.896 39 H 0.075 0.925 40 H 0.105 0.895 41 H 0.111 0.889 42 H 0.096 0.904 43 H 0.125 0.875 44 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -0.391 -11.500 13.641 17.846 hybrid contribution 0.357 0.810 -0.773 1.175 sum -0.035 -10.690 12.868 16.729 Atomic orbital electron populations 1.23559 0.75093 1.05757 1.02272 1.86427 1.24642 1.32085 1.84292 1.24314 0.92977 0.82393 0.74577 1.91001 1.67345 1.35338 1.41972 1.21002 0.87385 0.94958 1.05975 0.86211 1.21563 1.02586 0.99483 0.89577 1.21640 1.00019 0.95835 0.98563 1.21502 1.01812 0.95277 0.95941 1.21695 1.01867 1.00290 0.91743 1.30185 1.13177 1.04052 1.18708 0.82091 1.07406 0.74189 0.76540 0.76759 1.93393 1.78304 1.81886 1.47340 1.93492 1.31265 1.85674 1.87421 1.52005 1.27171 1.20769 1.65311 1.19157 0.85237 1.16917 1.23882 0.89601 1.26334 1.00555 0.99438 0.93232 1.70265 1.29697 1.20714 1.31262 0.85428 0.79343 0.77456 0.79114 1.20947 1.20300 1.17207 1.20978 0.92476 0.91824 0.96381 1.22939 1.02949 0.92752 1.00083 1.23476 1.03165 1.04794 0.90998 0.91589 0.84234 0.93367 0.88430 0.87691 0.93742 0.88277 0.90289 0.90036 0.90641 0.89573 0.92543 0.89500 0.88879 0.90443 0.87548 0.88214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.58 10.56 113.37 1.20 1.78 16 2 O -0.36 -9.88 10.47 -51.38 -0.54 -10.41 16 3 C 0.42 13.86 5.40 71.24 0.38 14.24 16 4 O -0.47 -19.27 9.47 29.99 0.28 -18.99 16 5 C -0.07 -2.08 2.65 -11.54 -0.03 -2.11 16 6 H 0.12 3.26 8.14 -2.39 -0.02 3.24 16 7 C -0.09 -1.76 5.39 30.59 0.16 -1.60 16 8 C -0.12 -2.27 5.70 30.59 0.17 -2.09 16 9 C -0.11 -2.24 5.92 30.59 0.18 -2.06 16 10 C -0.12 -3.59 4.67 30.61 0.14 -3.45 16 11 C -0.55 -18.43 2.56 30.61 0.08 -18.35 16 12 H 0.16 4.65 8.14 -2.39 -0.02 4.63 16 13 S 2.55 123.75 4.50 -56.49 -0.25 123.49 16 14 O -1.02 -57.29 17.22 -127.65 -2.20 -59.49 16 15 O -0.99 -53.22 12.88 -118.07 -1.52 -54.74 16 16 N -0.82 -41.52 2.72 -322.93 -0.88 -42.40 16 17 C -0.32 -16.61 8.14 84.03 0.68 -15.93 16 18 H 0.09 4.24 7.86 -2.91 -0.02 4.21 16 19 C 0.01 0.55 3.20 84.86 0.27 0.83 16 20 N -0.88 -50.06 11.38 21.65 0.25 -49.82 16 21 Si 0.96 41.21 29.52 68.60 2.02 43.23 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.25 -9.73 7.11 99.48 0.71 -9.02 16 25 C 0.09 4.31 5.11 44.99 0.23 4.54 16 26 C -0.15 -6.49 8.28 30.62 0.25 -6.24 16 27 C -0.18 -6.74 8.48 30.62 0.26 -6.48 16 28 H 0.07 1.41 8.13 -2.38 -0.02 1.39 16 29 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.05 1.24 8.13 -2.39 -0.02 1.22 16 31 H 0.10 1.50 8.11 -2.39 -0.02 1.48 16 32 H 0.10 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.04 0.96 7.22 -2.38 -0.02 0.94 16 34 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 35 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 36 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 37 H 0.08 2.66 5.51 -2.39 -0.01 2.65 16 38 H 0.09 2.71 4.62 -2.38 -0.01 2.70 16 39 H 0.27 14.22 8.32 -92.70 -0.77 13.45 16 40 H 0.09 4.37 7.40 -2.38 -0.02 4.36 16 41 H 0.09 4.44 5.13 -2.39 -0.01 4.43 16 42 H 0.08 3.20 8.14 -2.39 -0.02 3.18 16 43 H 0.11 3.24 8.14 -2.39 -0.02 3.22 16 44 H 0.10 3.43 7.65 -2.39 -0.02 3.42 16 Total: -1.00 -77.78 346.88 2.16 -75.62 By element: Atomic # 1 Polarization: 29.41 SS G_CDS: 1.00 Total: 30.42 kcal Atomic # 6 Polarization: -40.90 SS G_CDS: 3.99 Total: -36.91 kcal Atomic # 7 Polarization: -91.59 SS G_CDS: -0.63 Total: -92.22 kcal Atomic # 8 Polarization: -139.66 SS G_CDS: -3.97 Total: -143.64 kcal Atomic # 14 Polarization: 41.21 SS G_CDS: 2.02 Total: 43.23 kcal Atomic # 16 Polarization: 123.75 SS G_CDS: -0.25 Total: 123.49 kcal Total: -77.78 2.16 -75.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331927583.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.409 kcal (2) G-P(sol) polarization free energy of solvation -77.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.624 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.033 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds