Wall clock time and date at job start Tue Mar 31 2020 17:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31417 * 1 3 3 Si 1.86793 * 120.00190 * 2 1 4 4 H 1.48497 * 109.47289 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47123 * 300.00445 * 3 2 1 6 6 H 1.48499 * 109.47187 * 60.00129 * 3 2 1 7 7 C 1.38947 * 119.99933 * 180.02562 * 2 1 3 8 8 H 1.08007 * 120.00262 * 179.97438 * 7 2 1 9 9 N 1.37096 * 119.99904 * 359.97438 * 7 2 1 10 10 C 1.34781 * 120.00000 * 180.02562 * 9 7 2 11 11 O 1.21292 * 119.99810 * 359.97438 * 10 9 7 12 12 C 1.50700 * 120.00025 * 180.02562 * 10 9 7 13 13 N 1.46500 * 109.47371 * 180.02562 * 12 10 9 14 14 C 1.34773 * 120.00411 * 179.97438 * 13 12 10 15 15 O 1.21279 * 119.99860 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00079 * 179.97438 * 14 13 12 17 17 N 1.46500 * 109.46870 * 179.97438 * 16 14 13 18 18 C 1.34562 * 119.77617 * 270.02140 * 17 16 14 19 19 O 1.21289 * 119.61540 * 0.81899 * 18 17 16 20 20 C 1.50440 * 120.76966 * 180.77389 * 18 17 16 21 21 C 1.52906 * 109.94199 * 324.84919 * 20 18 17 22 22 C 1.50658 * 109.51821 * 48.53818 * 21 20 18 23 23 C 1.38087 * 120.18029 * 146.11305 * 22 21 20 24 24 C 1.38286 * 120.02846 * 179.97438 * 23 22 21 25 25 C 1.38297 * 120.14503 * 359.97438 * 24 23 22 26 26 C 1.38113 * 120.09262 * 0.02562 * 25 24 23 27 27 C 1.38845 * 119.84491 * 326.08957 * 22 21 20 28 28 H 0.97002 * 119.99395 * 359.97438 * 1 2 3 29 29 H 0.97003 * 120.00490 * 359.97438 * 9 7 2 30 30 H 1.09003 * 109.47227 * 59.99840 * 12 10 9 31 31 H 1.09004 * 109.47278 * 299.99830 * 12 10 9 32 32 H 0.97007 * 119.99803 * 359.97438 * 13 12 10 33 33 H 1.09000 * 109.46650 * 60.00179 * 16 14 13 34 34 H 1.09000 * 109.47207 * 299.99755 * 16 14 13 35 35 H 1.09004 * 109.39967 * 204.69038 * 20 18 17 36 36 H 1.09004 * 109.35692 * 84.98306 * 20 18 17 37 37 H 1.09002 * 109.46316 * 288.52317 * 21 20 18 38 38 H 1.08994 * 109.45848 * 168.54830 * 21 20 18 39 39 H 1.08004 * 119.98522 * 359.96826 * 23 22 21 40 40 H 1.07997 * 119.92460 * 180.02562 * 24 23 22 41 41 H 1.07997 * 119.95533 * 180.02562 * 25 24 23 42 42 H 1.07998 * 120.04936 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6176 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3964 -1.2125 6 1 1.8895 2.3963 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2034 -0.0010 9 7 1.3234 -2.3906 -0.0005 10 6 1.9972 -3.5578 -0.0005 11 8 3.2102 -3.5578 -0.0010 12 6 1.2437 -4.8629 -0.0011 13 7 2.1956 -5.9765 -0.0004 14 6 1.7464 -7.2472 -0.0002 15 8 0.5540 -7.4687 -0.0011 16 6 2.7257 -8.3926 0.0000 17 7 1.9931 -9.6613 0.0008 18 6 1.6590 -10.2393 1.1691 19 8 1.9547 -9.6964 2.2126 20 6 0.9220 -11.5505 1.1960 21 6 -0.0580 -11.6221 0.0245 22 6 0.6475 -11.2278 -1.2468 23 6 0.3038 -11.8225 -2.4447 24 6 0.9531 -11.4578 -3.6099 25 6 1.9473 -10.4970 -3.5793 26 6 2.2955 -9.8985 -2.3843 27 6 1.6456 -10.2632 -1.2125 28 1 -0.4849 0.8401 0.0004 29 1 0.3533 -2.3906 0.0002 30 1 0.6174 -4.9205 -0.8914 31 1 0.6167 -4.9209 0.8886 32 1 3.1494 -5.7993 0.0000 33 1 3.3523 -8.3347 0.8900 34 1 3.3524 -8.3351 -0.8900 35 1 0.3727 -11.6379 2.1335 36 1 1.6379 -12.3690 1.1198 37 1 -0.8897 -10.9410 0.2046 38 1 -0.4363 -12.6399 -0.0707 39 1 -0.4725 -12.5730 -2.4716 40 1 0.6827 -11.9238 -4.5459 41 1 2.4522 -10.2142 -4.4912 42 1 3.0723 -9.1486 -2.3611 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000343521468.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:16:49 Heat of formation + Delta-G solvation = -76.818412 kcal Electronic energy + Delta-G solvation = -27483.636030 eV Core-core repulsion = 23428.474157 eV Total energy + Delta-G solvation = -4055.161873 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 331.136 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.51315 -39.46109 -38.84257 -38.09594 -35.67322 -34.75254 -34.46729 -33.70586 -31.41280 -30.66150 -29.84622 -29.12538 -27.00937 -24.76796 -24.35776 -23.10933 -22.34041 -20.35911 -19.64972 -19.20250 -18.22292 -17.97846 -17.52788 -17.13767 -16.17735 -15.77943 -15.51113 -15.46084 -15.13156 -14.92548 -14.58597 -14.49162 -14.27367 -14.08078 -13.86265 -13.82592 -13.49208 -13.15684 -12.92728 -12.70783 -12.35390 -12.22539 -11.86760 -11.78780 -11.65275 -11.52334 -11.20284 -11.15395 -10.83809 -10.42167 -10.34182 -10.13581 -9.76912 -9.66635 -9.08499 -8.86325 -8.66319 -8.14396 -8.12167 -6.53229 -3.95318 0.97043 1.06713 2.21065 2.48728 2.70687 3.09116 3.21168 3.26852 3.34440 3.58751 3.71491 4.08435 4.10005 4.33532 4.38086 4.59787 4.72239 4.79191 4.84175 4.86289 4.88941 5.04969 5.06707 5.14026 5.15492 5.27060 5.39220 5.44673 5.56218 5.75009 5.81788 5.87645 5.93102 6.04017 6.07765 6.25432 6.27943 6.59722 6.60507 7.04511 7.44618 7.65829 7.76509 7.90073 8.34340 8.43270 9.02718 9.37092 9.84651 10.63720 Molecular weight = 331.14amu Principal moments of inertia in cm(-1) A = 0.020721 B = 0.002338 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1350.962460 B =11970.993888 C =12506.638919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.025 3.975 3 Si 0.933 3.067 4 H -0.267 1.267 5 H -0.280 1.280 6 H -0.280 1.280 7 C -0.305 4.305 8 H 0.106 0.894 9 N -0.549 5.549 10 C 0.428 3.572 11 O -0.597 6.597 12 C 0.110 3.890 13 N -0.704 5.704 14 C 0.498 3.502 15 O -0.536 6.536 16 C 0.084 3.916 17 N -0.534 5.534 18 C 0.524 3.476 19 O -0.520 6.520 20 C -0.133 4.133 21 C -0.077 4.077 22 C -0.120 4.120 23 C -0.084 4.084 24 C -0.144 4.144 25 C -0.088 4.088 26 C -0.155 4.155 27 C 0.174 3.826 28 H 0.274 0.726 29 H 0.396 0.604 30 H 0.084 0.916 31 H 0.083 0.917 32 H 0.412 0.588 33 H 0.123 0.877 34 H 0.117 0.883 35 H 0.109 0.891 36 H 0.102 0.898 37 H 0.086 0.914 38 H 0.090 0.910 39 H 0.128 0.872 40 H 0.124 0.876 41 H 0.128 0.872 42 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.899 -25.613 -5.307 26.173 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.178 4.178 3 Si 0.760 3.240 4 H -0.191 1.191 5 H -0.206 1.206 6 H -0.206 1.206 7 C -0.434 4.434 8 H 0.124 0.876 9 N -0.183 5.183 10 C 0.214 3.786 11 O -0.484 6.484 12 C -0.017 4.017 13 N -0.358 5.358 14 C 0.282 3.718 15 O -0.413 6.413 16 C -0.042 4.042 17 N -0.257 5.257 18 C 0.314 3.686 19 O -0.394 6.394 20 C -0.173 4.173 21 C -0.114 4.114 22 C -0.122 4.122 23 C -0.103 4.103 24 C -0.163 4.163 25 C -0.107 4.107 26 C -0.175 4.175 27 C 0.079 3.921 28 H 0.084 0.916 29 H 0.230 0.770 30 H 0.102 0.898 31 H 0.101 0.899 32 H 0.249 0.751 33 H 0.141 0.859 34 H 0.134 0.866 35 H 0.128 0.872 36 H 0.120 0.880 37 H 0.104 0.896 38 H 0.108 0.892 39 H 0.146 0.854 40 H 0.142 0.858 41 H 0.145 0.855 42 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 0.884 -25.248 -4.618 25.682 hybrid contribution 0.169 1.197 -0.113 1.214 sum 1.053 -24.051 -4.731 24.534 Atomic orbital electron populations 1.69628 1.06034 1.28453 1.49326 1.25339 0.95677 0.99980 0.96769 0.85749 0.79679 0.80769 0.77845 1.19112 1.20595 1.20585 1.19783 0.93491 0.81956 1.48162 0.87590 1.41807 1.09500 1.04494 1.62531 1.19713 0.88280 0.84952 0.85662 1.90494 1.13665 1.86811 1.57423 1.20954 0.91837 0.85694 1.03246 1.45615 1.11696 1.04416 1.74113 1.20759 0.90017 0.84071 0.77003 1.90701 1.16449 1.84667 1.49484 1.21514 0.94267 0.81694 1.06686 1.45002 1.54746 1.20782 1.05134 1.20746 0.78360 0.87145 0.82375 1.90758 1.52990 1.64430 1.31265 1.21667 0.99420 0.94649 1.01566 1.20425 0.97659 1.03127 0.90182 1.19497 0.97136 0.99342 0.96250 1.20826 0.99083 0.99142 0.91234 1.21085 0.97821 0.99132 0.98247 1.20973 0.96950 0.95585 0.97155 1.20862 1.01831 1.03219 0.91616 1.17624 0.94804 0.94283 0.85375 0.91614 0.77036 0.89835 0.89860 0.75051 0.85871 0.86550 0.87248 0.87954 0.89557 0.89157 0.85426 0.85778 0.85454 0.85374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.99 13.05 55.50 0.72 -23.27 16 2 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 3 Si 0.93 20.57 29.55 -169.99 -5.02 15.55 16 4 H -0.27 -5.87 7.11 56.52 0.40 -5.46 16 5 H -0.28 -6.08 7.11 56.52 0.40 -5.67 16 6 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 7 C -0.30 -8.30 9.68 -14.94 -0.14 -8.44 16 8 H 0.11 3.01 7.16 -52.48 -0.38 2.63 16 9 N -0.55 -13.70 5.29 -10.96 -0.06 -13.75 16 10 C 0.43 9.87 7.85 -10.98 -0.09 9.78 16 11 O -0.60 -15.22 15.24 5.55 0.08 -15.14 16 12 C 0.11 2.08 6.15 -5.19 -0.03 2.04 16 13 N -0.70 -11.76 5.53 -61.47 -0.34 -12.10 16 14 C 0.50 8.07 7.90 -10.98 -0.09 7.98 16 15 O -0.54 -10.49 16.43 5.56 0.09 -10.40 16 16 C 0.08 1.03 5.62 -5.19 -0.03 1.01 16 17 N -0.53 -6.72 2.18 -114.94 -0.25 -6.97 16 18 C 0.52 6.93 7.45 -11.21 -0.08 6.84 16 19 O -0.52 -8.68 16.61 5.55 0.09 -8.59 16 20 C -0.13 -1.17 6.07 -28.06 -0.17 -1.34 16 21 C -0.08 -0.62 6.00 -27.95 -0.17 -0.78 16 22 C -0.12 -1.16 5.66 -104.47 -0.59 -1.75 16 23 C -0.08 -0.67 9.69 -39.62 -0.38 -1.05 16 24 C -0.14 -1.11 10.04 -39.54 -0.40 -1.51 16 25 C -0.09 -0.74 10.04 -39.61 -0.40 -1.13 16 26 C -0.15 -1.53 9.33 -39.40 -0.37 -1.90 16 27 C 0.17 1.95 6.33 -83.76 -0.53 1.42 16 28 H 0.27 6.92 8.31 -40.82 -0.34 6.58 16 29 H 0.40 9.54 7.90 -40.82 -0.32 9.21 16 30 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.08 1.55 8.14 -51.93 -0.42 1.13 16 32 H 0.41 6.54 7.44 -40.82 -0.30 6.24 16 33 H 0.12 1.45 7.40 -51.93 -0.38 1.06 16 34 H 0.12 1.05 5.81 -51.93 -0.30 0.74 16 35 H 0.11 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 38 H 0.09 0.46 8.06 -51.93 -0.42 0.04 16 39 H 0.13 0.69 8.06 -52.48 -0.42 0.27 16 40 H 0.12 0.68 8.06 -52.49 -0.42 0.25 16 41 H 0.13 0.80 8.06 -52.49 -0.42 0.37 16 42 H 0.13 1.09 6.02 -52.49 -0.32 0.78 16 LS Contribution 361.48 15.07 5.45 5.45 Total: -1.00 -35.13 361.48 -7.73 -42.86 By element: Atomic # 1 Polarization: 19.56 SS G_CDS: -4.94 Total: 14.62 kcal Atomic # 6 Polarization: 15.31 SS G_CDS: -3.56 Total: 11.74 kcal Atomic # 7 Polarization: -56.17 SS G_CDS: 0.08 Total: -56.10 kcal Atomic # 8 Polarization: -34.39 SS G_CDS: 0.27 Total: -34.13 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -35.13 -7.73 -42.86 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000343521468.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.956 kcal (2) G-P(sol) polarization free energy of solvation -35.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.818 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds