Wall clock time and date at job start Tue Mar 31 2020 16:41:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 116.99853 * 2 1 4 4 O 1.20833 * 119.99891 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00108 * 179.97438 * 3 2 1 6 6 C 1.53008 * 109.47038 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.46861 * 179.97438 * 6 5 3 8 8 C 1.34782 * 119.99991 * 269.99711 * 7 6 5 9 9 O 1.21278 * 119.99976 * 5.72141 * 8 7 6 10 10 C 1.50705 * 119.99853 * 185.71208 * 8 7 6 11 11 S 1.81002 * 109.46817 * 182.63692 * 10 8 7 12 12 C 1.76206 * 99.99617 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00206 * 359.97438 * 12 11 10 14 14 C 1.38794 * 119.99513 * 180.02562 * 12 11 10 15 15 N 1.31638 * 120.00012 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00552 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.46820 * 89.99716 * 16 14 12 18 18 H 1.48492 * 109.47304 * 210.00026 * 16 14 12 19 19 H 1.48497 * 109.46925 * 330.00319 * 16 14 12 20 20 C 1.46505 * 120.00205 * 90.00174 * 7 6 5 21 21 C 1.53182 * 109.53770 * 306.06860 * 20 7 6 22 22 C 1.53097 * 109.16000 * 176.84719 * 21 20 7 23 23 O 1.42905 * 109.41385 * 302.39270 * 22 21 20 24 24 C 1.42907 * 114.10022 * 61.15861 * 23 22 21 25 25 C 1.53094 * 109.41035 * 298.84265 * 24 23 22 26 26 H 1.09000 * 109.47129 * 60.00311 * 1 2 3 27 27 H 1.09007 * 109.46815 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47643 * 299.99927 * 1 2 3 29 29 H 1.08993 * 109.47463 * 59.99945 * 5 3 2 30 30 H 1.09006 * 109.47150 * 299.99735 * 5 3 2 31 31 H 1.09002 * 109.46996 * 59.99949 * 6 5 3 32 32 H 1.08992 * 109.46905 * 299.99682 * 6 5 3 33 33 H 1.08999 * 109.47188 * 302.64142 * 10 8 7 34 34 H 1.09004 * 109.46847 * 62.64333 * 10 8 7 35 35 H 0.96995 * 120.00045 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.61467 * 185.85133 * 20 7 6 37 37 H 1.08999 * 109.52679 * 296.74834 * 21 20 7 38 38 H 1.08995 * 109.52299 * 56.94094 * 21 20 7 39 39 H 1.08991 * 109.48027 * 182.41096 * 22 21 20 40 40 H 1.09001 * 109.48252 * 62.37210 * 22 21 20 41 41 H 1.08998 * 109.48405 * 178.86085 * 24 23 22 42 42 H 1.08995 * 109.48870 * 58.82684 * 24 23 22 43 43 H 1.08998 * 109.52556 * 297.69533 * 25 24 23 44 44 H 1.09009 * 109.51690 * 177.51426 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0000 2.7422 0.0011 7 7 5.4629 2.8189 0.0023 8 6 6.1350 2.8541 1.1701 9 8 5.5386 2.7180 2.2173 10 6 7.6276 3.0625 1.1745 11 16 8.2426 2.9835 2.8750 12 6 9.9609 3.2521 2.5915 13 1 10.3256 3.4006 1.5858 14 6 10.8457 3.2719 3.6606 15 7 12.1293 3.4730 3.4490 16 14 10.2153 3.0130 5.3999 17 1 10.2422 1.5644 5.7256 18 1 11.0802 3.7513 6.3549 19 1 8.8224 3.5174 5.5017 20 6 6.1955 2.8575 -1.2659 21 6 5.7781 1.6672 -2.1350 22 6 6.4889 1.7590 -3.4878 23 8 6.1660 3.0041 -4.1105 24 6 6.5753 4.1527 -3.3653 25 6 5.8679 4.1569 -2.0076 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.9564 0.7807 -0.8891 30 1 3.9557 0.7810 0.8909 31 1 3.6099 3.2361 0.8911 32 1 3.6106 3.2365 -0.8889 33 1 8.1048 2.2842 0.5789 34 1 7.8593 4.0390 0.7493 35 1 12.7477 3.4872 4.1962 36 1 7.2669 2.8088 -1.0712 37 1 6.0580 0.7379 -1.6389 38 1 4.6992 1.6887 -2.2882 39 1 6.1629 0.9380 -4.1262 40 1 7.5667 1.6968 -3.3372 41 1 6.3114 5.0560 -3.9154 42 1 7.6541 4.1219 -3.2130 43 1 4.7908 4.2288 -2.1582 44 1 6.2121 5.0083 -1.4203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000742963835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:52 Heat of formation + Delta-G solvation = -168.656363 kcal Electronic energy + Delta-G solvation = -26900.749459 eV Core-core repulsion = 22944.756393 eV Total energy + Delta-G solvation = -3955.993066 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.91460 -40.27026 -38.87399 -36.87772 -36.04981 -33.00498 -32.48026 -31.58031 -31.25025 -29.41844 -27.82187 -25.67568 -25.06834 -24.22981 -23.86127 -21.05760 -20.71175 -19.38386 -17.95359 -17.85960 -17.00756 -16.92637 -16.66689 -16.48541 -16.22705 -15.45079 -15.39573 -15.00875 -14.96841 -14.36040 -14.04943 -14.01480 -13.91275 -13.61944 -13.24522 -13.06900 -12.92457 -12.81621 -12.64712 -12.33098 -12.02775 -11.77257 -11.58599 -11.32312 -11.25794 -11.15267 -11.07423 -11.04300 -10.76458 -10.68436 -10.62306 -9.96037 -9.87456 -9.54578 -9.04554 -8.82547 -8.54383 -6.97312 -6.32969 -4.05395 1.95916 2.28316 2.69822 2.81109 3.11831 3.29915 3.47441 3.52054 3.62111 4.28833 4.32632 4.42180 4.42995 4.52795 4.66198 4.72339 4.78306 4.80870 4.83168 4.88696 4.92995 5.01030 5.06291 5.12089 5.19526 5.24506 5.29734 5.36470 5.41739 5.52454 5.54825 5.65228 5.69345 5.74490 5.78250 5.89109 5.96118 6.11448 6.41687 6.91105 7.30824 7.47635 7.89938 8.30282 8.36869 9.13184 10.76183 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010872 B = 0.003570 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.788392 B = 7841.848195 C = 9862.712519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.360 6.360 3 C 0.468 3.532 4 O -0.508 6.508 5 C -0.138 4.138 6 C 0.131 3.869 7 N -0.612 5.612 8 C 0.533 3.467 9 O -0.511 6.511 10 C -0.123 4.123 11 S -0.141 6.141 12 C -0.521 4.521 13 H 0.088 0.912 14 C 0.096 3.904 15 N -0.880 5.880 16 Si 0.856 3.144 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.235 1.235 20 C 0.134 3.866 21 C -0.171 4.171 22 C 0.063 3.937 23 O -0.383 6.383 24 C 0.063 3.937 25 C -0.169 4.169 26 H 0.062 0.938 27 H 0.101 0.899 28 H 0.063 0.937 29 H 0.111 0.889 30 H 0.114 0.886 31 H 0.094 0.906 32 H 0.085 0.915 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.271 0.729 36 H 0.103 0.897 37 H 0.083 0.917 38 H 0.078 0.922 39 H 0.097 0.903 40 H 0.057 0.943 41 H 0.097 0.903 42 H 0.057 0.943 43 H 0.077 0.923 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.566 -4.998 -15.067 23.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.277 6.277 3 C 0.311 3.689 4 O -0.396 6.396 5 C -0.177 4.177 6 C 0.008 3.992 7 N -0.347 5.347 8 C 0.321 3.679 9 O -0.384 6.384 10 C -0.273 4.273 11 S 0.085 5.915 12 C -0.669 4.669 13 H 0.106 0.894 14 C -0.113 4.113 15 N -0.516 5.516 16 Si 0.681 3.319 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.159 1.159 20 C 0.030 3.970 21 C -0.209 4.209 22 C -0.014 4.014 23 O -0.302 6.302 24 C -0.014 4.014 25 C -0.208 4.208 26 H 0.081 0.919 27 H 0.119 0.881 28 H 0.082 0.918 29 H 0.129 0.871 30 H 0.132 0.868 31 H 0.112 0.888 32 H 0.104 0.896 33 H 0.114 0.886 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.121 0.879 37 H 0.102 0.898 38 H 0.097 0.903 39 H 0.115 0.885 40 H 0.075 0.925 41 H 0.115 0.885 42 H 0.075 0.925 43 H 0.095 0.905 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -18.576 -4.906 -13.584 23.530 hybrid contribution 0.651 0.083 -0.151 0.674 sum -17.925 -4.823 -13.735 23.091 Atomic orbital electron populations 1.23270 0.76294 1.03695 1.02603 1.86518 1.23509 1.33544 1.84110 1.23685 0.91941 0.81324 0.71992 1.90681 1.67309 1.36257 1.45324 1.22054 0.87472 1.01334 1.06849 1.21075 0.79979 0.93433 1.04705 1.47998 1.05842 1.75084 1.05751 1.20384 0.89396 0.75301 0.82806 1.90713 1.69647 1.47227 1.30824 1.23340 0.93447 1.05409 1.05123 1.84832 1.08051 1.95069 1.03536 1.22287 0.89351 1.57060 0.98175 0.89390 1.24707 0.94079 0.93230 0.99235 1.69936 1.01908 1.47232 1.32539 0.86745 0.81443 0.79722 0.84012 1.19197 1.19908 1.15916 1.21288 0.97732 0.94725 0.83267 1.22761 1.02245 0.99213 0.96710 1.22574 0.98952 0.86776 0.93137 1.87940 1.81794 1.13853 1.46575 1.22586 0.98288 0.89037 0.91534 1.22636 1.02570 0.98443 0.97109 0.91897 0.88094 0.91797 0.87146 0.86758 0.88808 0.89639 0.88618 0.88375 0.91899 0.87948 0.89833 0.90334 0.88470 0.92514 0.88454 0.92511 0.90473 0.89881 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.26 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.73 10.57 -39.25 -0.41 -4.14 16 3 C 0.47 5.37 7.96 36.01 0.29 5.66 16 4 O -0.51 -7.02 15.73 -18.76 -0.30 -7.31 16 5 C -0.14 -1.43 5.82 -27.88 -0.16 -1.59 16 6 C 0.13 1.54 3.91 -4.04 -0.02 1.52 16 7 N -0.61 -7.65 2.40 -165.89 -0.40 -8.05 16 8 C 0.53 9.06 7.67 -10.98 -0.08 8.97 16 9 O -0.51 -10.53 15.50 5.56 0.09 -10.44 16 10 C -0.12 -2.27 4.60 36.01 0.17 -2.10 16 11 S -0.14 -3.48 18.55 -107.50 -1.99 -5.47 16 12 C -0.52 -14.62 10.04 30.94 0.31 -14.31 16 13 H 0.09 2.56 8.03 -52.49 -0.42 2.14 16 14 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 15 N -0.88 -26.12 13.97 55.49 0.78 -25.34 16 16 Si 0.86 21.45 27.74 -169.99 -4.72 16.74 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.24 -5.89 6.74 56.52 0.38 -5.51 16 20 C 0.13 1.34 2.49 -67.75 -0.17 1.17 16 21 C -0.17 -1.39 4.22 -26.59 -0.11 -1.50 16 22 C 0.06 0.49 6.84 37.21 0.25 0.75 16 23 O -0.38 -3.70 10.77 -35.23 -0.38 -4.08 16 24 C 0.06 0.53 6.84 37.21 0.25 0.78 16 25 C -0.17 -1.52 5.53 -26.59 -0.15 -1.67 16 26 H 0.06 0.44 8.13 -51.93 -0.42 0.02 16 27 H 0.10 0.47 8.14 -51.92 -0.42 0.05 16 28 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 29 H 0.11 0.91 5.43 -51.93 -0.28 0.62 16 30 H 0.11 1.31 8.14 -51.93 -0.42 0.89 16 31 H 0.09 1.32 7.46 -51.93 -0.39 0.93 16 32 H 0.09 0.89 6.61 -51.93 -0.34 0.54 16 33 H 0.10 1.62 7.28 -51.92 -0.38 1.24 16 34 H 0.10 1.71 8.14 -51.91 -0.42 1.28 16 35 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.10 1.07 5.80 -51.93 -0.30 0.77 16 37 H 0.08 0.64 8.03 -51.93 -0.42 0.23 16 38 H 0.08 0.62 6.13 -51.93 -0.32 0.30 16 39 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 41 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 43 H 0.08 0.70 6.82 -51.93 -0.35 0.35 16 44 H 0.08 0.78 8.14 -51.92 -0.42 0.35 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -34.56 369.47 -6.80 -41.36 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: -6.59 Total: -0.51 kcal Atomic # 6 Polarization: 0.12 SS G_CDS: 1.55 Total: 1.67 kcal Atomic # 7 Polarization: -33.76 SS G_CDS: 0.38 Total: -33.39 kcal Atomic # 8 Polarization: -24.97 SS G_CDS: -1.00 Total: -25.97 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.72 Total: 16.74 kcal Atomic # 16 Polarization: -3.48 SS G_CDS: -1.99 Total: -5.47 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.56 -6.80 -41.36 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742963835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -127.297 kcal (2) G-P(sol) polarization free energy of solvation -34.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.856 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.360 kcal (6) G-S(sol) free energy of system = (1) + (5) -168.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds