Wall clock time and date at job start Tue Mar 31 2020 16:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34227 * 116.99853 * 2 1 4 4 O 1.20833 * 119.99891 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00108 * 179.97438 * 3 2 1 6 6 C 1.53008 * 109.47038 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.46861 * 179.97438 * 6 5 3 8 8 C 1.34782 * 119.99991 * 269.99711 * 7 6 5 9 9 O 1.21278 * 119.99976 * 5.72141 * 8 7 6 10 10 C 1.50705 * 119.99853 * 185.71208 * 8 7 6 11 11 S 1.81002 * 109.46817 * 182.63692 * 10 8 7 12 12 C 1.76206 * 99.99617 * 180.02562 * 11 10 8 13 13 H 1.08000 * 120.00206 * 359.97438 * 12 11 10 14 14 C 1.38794 * 119.99513 * 180.02562 * 12 11 10 15 15 N 1.31638 * 120.00012 * 180.02562 * 14 12 11 16 16 Si 1.86801 * 120.00552 * 0.02562 * 14 12 11 17 17 H 1.48500 * 109.46820 * 89.99716 * 16 14 12 18 18 H 1.48492 * 109.47304 * 210.00026 * 16 14 12 19 19 H 1.48497 * 109.46925 * 330.00319 * 16 14 12 20 20 C 1.46505 * 120.00205 * 90.00174 * 7 6 5 21 21 C 1.53182 * 109.53770 * 306.06860 * 20 7 6 22 22 C 1.53097 * 109.16000 * 176.84719 * 21 20 7 23 23 O 1.42905 * 109.41385 * 302.39270 * 22 21 20 24 24 C 1.42907 * 114.10022 * 61.15861 * 23 22 21 25 25 C 1.53094 * 109.41035 * 298.84265 * 24 23 22 26 26 H 1.09000 * 109.47129 * 60.00311 * 1 2 3 27 27 H 1.09007 * 109.46815 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.47643 * 299.99927 * 1 2 3 29 29 H 1.08993 * 109.47463 * 59.99945 * 5 3 2 30 30 H 1.09006 * 109.47150 * 299.99735 * 5 3 2 31 31 H 1.09002 * 109.46996 * 59.99949 * 6 5 3 32 32 H 1.08992 * 109.46905 * 299.99682 * 6 5 3 33 33 H 1.08999 * 109.47188 * 302.64142 * 10 8 7 34 34 H 1.09004 * 109.46847 * 62.64333 * 10 8 7 35 35 H 0.96995 * 120.00045 * 179.97438 * 15 14 12 36 36 H 1.09000 * 109.61467 * 185.85133 * 20 7 6 37 37 H 1.08999 * 109.52679 * 296.74834 * 21 20 7 38 38 H 1.08995 * 109.52299 * 56.94094 * 21 20 7 39 39 H 1.08991 * 109.48027 * 182.41096 * 22 21 20 40 40 H 1.09001 * 109.48252 * 62.37210 * 22 21 20 41 41 H 1.08998 * 109.48405 * 178.86085 * 24 23 22 42 42 H 1.08995 * 109.48870 * 58.82684 * 24 23 22 43 43 H 1.08998 * 109.52556 * 297.69533 * 25 24 23 44 44 H 1.09009 * 109.51690 * 177.51426 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2749 0.0006 6 6 4.0000 2.7422 0.0011 7 7 5.4629 2.8189 0.0023 8 6 6.1350 2.8541 1.1701 9 8 5.5386 2.7180 2.2173 10 6 7.6276 3.0625 1.1745 11 16 8.2426 2.9835 2.8750 12 6 9.9609 3.2521 2.5915 13 1 10.3256 3.4006 1.5858 14 6 10.8457 3.2719 3.6606 15 7 12.1293 3.4730 3.4490 16 14 10.2153 3.0130 5.3999 17 1 10.2422 1.5644 5.7256 18 1 11.0802 3.7513 6.3549 19 1 8.8224 3.5174 5.5017 20 6 6.1955 2.8575 -1.2659 21 6 5.7781 1.6672 -2.1350 22 6 6.4889 1.7590 -3.4878 23 8 6.1660 3.0041 -4.1105 24 6 6.5753 4.1527 -3.3653 25 6 5.8679 4.1569 -2.0076 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 3.9564 0.7807 -0.8891 30 1 3.9557 0.7810 0.8909 31 1 3.6099 3.2361 0.8911 32 1 3.6106 3.2365 -0.8889 33 1 8.1048 2.2842 0.5789 34 1 7.8593 4.0390 0.7493 35 1 12.7477 3.4872 4.1962 36 1 7.2669 2.8088 -1.0712 37 1 6.0580 0.7379 -1.6389 38 1 4.6992 1.6887 -2.2882 39 1 6.1629 0.9380 -4.1262 40 1 7.5667 1.6968 -3.3372 41 1 6.3114 5.0560 -3.9154 42 1 7.6541 4.1219 -3.2130 43 1 4.7908 4.2288 -2.1582 44 1 6.2121 5.0083 -1.4203 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000742963835.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 16:41:51 Heat of formation + Delta-G solvation = -191.338615 kcal Electronic energy + Delta-G solvation = -26901.733035 eV Core-core repulsion = 22944.756393 eV Total energy + Delta-G solvation = -3956.976642 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 331.133 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.86724 -41.22285 -39.84785 -37.77396 -37.09950 -34.66835 -33.90306 -32.51777 -32.02785 -30.66976 -28.58405 -27.84717 -25.86615 -25.22169 -24.54801 -21.97379 -21.54495 -20.56598 -19.69663 -18.74417 -18.31665 -17.81264 -17.61035 -17.40517 -17.08482 -16.90356 -16.58668 -16.44757 -15.75689 -15.62260 -15.30187 -14.95117 -14.91226 -14.84583 -14.50131 -14.27096 -14.01044 -13.81098 -13.47287 -13.34550 -13.30764 -13.02355 -12.92016 -12.69437 -12.52518 -12.31968 -12.09253 -11.92075 -11.87021 -11.82279 -11.69166 -11.44870 -11.17006 -10.95123 -10.57022 -10.50059 -9.90555 -9.00290 -8.51382 -6.22168 0.94347 1.06771 1.31083 1.36035 1.44057 1.50223 1.66868 2.07801 2.24661 2.66459 2.87189 2.99288 3.41538 3.54624 3.61067 3.75676 3.89447 3.94651 4.01627 4.05287 4.17948 4.23605 4.27998 4.31060 4.38048 4.39503 4.41128 4.56928 4.61977 4.69210 4.69958 4.80612 4.83445 4.87681 5.05786 5.08321 5.19081 5.29599 5.40102 5.71140 6.11888 6.14249 6.27689 6.61437 6.94124 6.99459 8.60864 Molecular weight = 331.13amu Principal moments of inertia in cm(-1) A = 0.010872 B = 0.003570 C = 0.002838 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2574.788392 B = 7841.848195 C = 9862.712519 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.364 6.364 3 C 0.471 3.529 4 O -0.536 6.536 5 C -0.130 4.130 6 C 0.134 3.866 7 N -0.594 5.594 8 C 0.537 3.463 9 O -0.553 6.553 10 C -0.107 4.107 11 S -0.175 6.175 12 C -0.525 4.525 13 H 0.064 0.936 14 C 0.047 3.953 15 N -0.916 5.916 16 Si 0.911 3.089 17 H -0.262 1.262 18 H -0.261 1.261 19 H -0.238 1.238 20 C 0.126 3.874 21 C -0.165 4.165 22 C 0.061 3.939 23 O -0.397 6.397 24 C 0.063 3.937 25 C -0.164 4.164 26 H 0.067 0.933 27 H 0.131 0.869 28 H 0.058 0.942 29 H 0.138 0.862 30 H 0.105 0.895 31 H 0.068 0.932 32 H 0.104 0.896 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.277 0.723 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.085 0.915 39 H 0.115 0.885 40 H 0.059 0.941 41 H 0.109 0.891 42 H 0.059 0.941 43 H 0.079 0.921 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.842 -5.950 -16.365 25.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.280 6.280 3 C 0.315 3.685 4 O -0.426 6.426 5 C -0.169 4.169 6 C 0.011 3.989 7 N -0.327 5.327 8 C 0.325 3.675 9 O -0.430 6.430 10 C -0.258 4.258 11 S 0.051 5.949 12 C -0.673 4.673 13 H 0.083 0.917 14 C -0.158 4.158 15 N -0.555 5.555 16 Si 0.734 3.266 17 H -0.186 1.186 18 H -0.185 1.185 19 H -0.162 1.162 20 C 0.023 3.977 21 C -0.204 4.204 22 C -0.016 4.016 23 O -0.316 6.316 24 C -0.014 4.014 25 C -0.203 4.203 26 H 0.085 0.915 27 H 0.150 0.850 28 H 0.077 0.923 29 H 0.155 0.845 30 H 0.123 0.877 31 H 0.086 0.914 32 H 0.122 0.878 33 H 0.133 0.867 34 H 0.128 0.872 35 H 0.086 0.914 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.103 0.897 39 H 0.133 0.867 40 H 0.078 0.922 41 H 0.127 0.873 42 H 0.077 0.923 43 H 0.097 0.903 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.859 -5.872 -14.934 25.532 hybrid contribution 0.960 0.366 0.069 1.029 sum -18.899 -5.506 -14.865 24.667 Atomic orbital electron populations 1.23565 0.74648 1.05761 1.02589 1.86506 1.25157 1.32725 1.83629 1.23791 0.92205 0.81283 0.71209 1.90673 1.67957 1.37172 1.46789 1.21966 0.87056 1.00218 1.07638 1.21089 0.78943 0.94562 1.04314 1.47893 1.06275 1.73139 1.05353 1.20070 0.88608 0.75344 0.83500 1.90703 1.70077 1.49659 1.32567 1.23308 0.94753 1.06892 1.00835 1.84767 1.05794 1.95153 1.09164 1.22426 0.91375 1.56287 0.97192 0.91744 1.25522 0.94295 0.93141 1.02886 1.70011 1.03021 1.48494 1.33924 0.85906 0.80856 0.79951 0.79919 1.18623 1.18519 1.16177 1.21554 0.97283 0.96526 0.82314 1.22733 1.02695 0.98408 0.96517 1.22707 0.99177 0.86690 0.93028 1.87929 1.81979 1.14557 1.47160 1.22641 0.98315 0.89363 0.91052 1.22592 1.02798 0.97534 0.97357 0.91467 0.85048 0.92322 0.84471 0.87715 0.91389 0.87833 0.86714 0.87153 0.91390 0.88287 0.88977 0.89687 0.86713 0.92228 0.87267 0.92273 0.90252 0.90332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 10.56 113.37 1.20 1.56 16 2 O -0.36 -6.89 10.57 -51.39 -0.54 -7.44 16 3 C 0.47 10.20 7.96 71.24 0.57 10.77 16 4 O -0.54 -14.39 15.73 21.94 0.35 -14.04 16 5 C -0.13 -2.48 5.82 29.85 0.17 -2.31 16 6 C 0.13 2.96 3.91 86.38 0.34 3.30 16 7 N -0.59 -13.97 2.40 -797.15 -1.92 -15.88 16 8 C 0.54 17.83 7.67 87.66 0.67 18.51 16 9 O -0.55 -22.82 15.50 -3.02 -0.05 -22.87 16 10 C -0.11 -3.87 4.60 71.24 0.33 -3.54 16 11 S -0.18 -8.63 18.55 -56.49 -1.05 -9.68 16 12 C -0.53 -29.76 10.04 67.95 0.68 -29.08 16 13 H 0.06 3.83 8.03 -2.91 -0.02 3.81 16 14 C 0.05 2.71 5.50 84.86 0.47 3.18 16 15 N -0.92 -54.94 13.97 21.65 0.30 -54.64 16 16 Si 0.91 44.36 27.74 68.60 1.90 46.26 16 17 H -0.26 -12.39 7.11 99.48 0.71 -11.68 16 18 H -0.26 -11.97 7.11 99.48 0.71 -11.26 16 19 H -0.24 -11.60 6.74 99.48 0.67 -10.93 16 20 C 0.13 2.25 2.49 45.11 0.11 2.36 16 21 C -0.17 -2.19 4.22 30.69 0.13 -2.06 16 22 C 0.06 0.78 6.84 72.01 0.49 1.27 16 23 O -0.40 -6.65 10.77 -148.98 -1.60 -8.26 16 24 C 0.06 0.92 6.84 72.01 0.49 1.42 16 25 C -0.16 -2.63 5.53 30.68 0.17 -2.46 16 26 H 0.07 0.83 8.13 -2.39 -0.02 0.81 16 27 H 0.13 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.06 0.84 8.13 -2.39 -0.02 0.82 16 29 H 0.14 1.84 5.43 -2.39 -0.01 1.83 16 30 H 0.10 2.29 8.14 -2.38 -0.02 2.27 16 31 H 0.07 1.91 7.46 -2.39 -0.02 1.89 16 32 H 0.10 1.95 6.61 -2.39 -0.02 1.93 16 33 H 0.11 3.72 7.28 -2.40 -0.02 3.70 16 34 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 35 H 0.28 15.37 8.31 -92.71 -0.77 14.60 16 36 H 0.10 1.87 5.80 -2.39 -0.01 1.85 16 37 H 0.09 1.11 8.03 -2.39 -0.02 1.09 16 38 H 0.08 1.05 6.13 -2.39 -0.01 1.03 16 39 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 41 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 42 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 43 H 0.08 1.25 6.82 -2.39 -0.02 1.24 16 44 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 Total: -1.00 -75.03 369.47 4.18 -70.85 By element: Atomic # 1 Polarization: 11.82 SS G_CDS: 0.97 Total: 12.79 kcal Atomic # 6 Polarization: -2.92 SS G_CDS: 5.82 Total: 2.90 kcal Atomic # 7 Polarization: -68.90 SS G_CDS: -1.61 Total: -70.52 kcal Atomic # 8 Polarization: -50.75 SS G_CDS: -1.85 Total: -52.60 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.90 Total: 46.26 kcal Atomic # 16 Polarization: -8.63 SS G_CDS: -1.05 Total: -9.68 kcal Total: -75.03 4.18 -70.85 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000742963835.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -120.492 kcal (2) G-P(sol) polarization free energy of solvation -75.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -195.520 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -191.339 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds